Genetic diversity and relationships in Corchorus olitorius (Malvaceae s.l.) inferred from molecular and morphological data

Genetic Resources and Crop Evolution

Volumn 59, Issue 6, 2012, Pages 1125-1146

  Benor, Solomon ^a   Demissew, Sebsebe ^b   Hammer, Karl ^c   Blattner, Frank R ^a  

^a LEIBNIZ INSTITUTE OF PLANT GENETICS AND CROP PLANT RESEARCH IPK   (Germany)

^b ADDIS ABABA UNIVERSITY   (Ethiopia)

^c UNIVERSITY OF KASSEL   (Germany)

Author keywords

AFLP; Bayesian inference; Corchorus olitorius; Domestication; Jute; Malvaceae s.l.; Morphometric analysis; Population structure

Indexed keywords

BAYESIAN ANALYSIS; DATA SET; DICOTYLEDON; DISPERSAL; DOMESTICATION; GENETIC MARKER; GENETIC RESOURCE; GENETIC VARIATION; GEOGRAPHICAL DISTRIBUTION; GERMPLASM; MIGRATION; MOLECULAR ANALYSIS; MORPHOLOGY; MORPHOMETRY; PLANT BREEDING; POPULATION STRUCTURE; TAXONOMY; WILD POPULATION;

AFRICA;

CORCHORUS CAPSULARIS; CORCHORUS OLITORIUS; MALVACEAE;

EID: 84864742056     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10722-011-9748-8     Document Type: Article

References (44)

1. Azuma K, Nakayama M, Koshioka M, Ippoushi K, Yamaguchi Y, Kohata K, Yamauchi Y, Ito H, Higashio H (1999) Phenolic antioxidants from the leaves of Corchorus olitorius L. J Agric Food Chem 47: 3963-3966.
2. Basu A, Ghosh M, Mayer R, Powell W, Basak SL, Sen SK (2004) Analysis of genetic diversity in cultivated jute determined by means of SSR markers and AFLP profiling. Crop Sci 44: 678-685.
3. Bayer C, Kubitzki K (2003) Malvaceae. In: Kubitzki K (ed) The families and genera of vascular plants, vol. 5, Malvales, Capparales and non-betalain Caryophyllales. Springer, Berlin, pp 225-311.
4. Benor S, Blattner FR, Demissew S, Hammer K (2010) Collection and ethnobotanical investigation of Corchorus species in Ethiopia: potential leafy vegetables for dry regions. Genet Resour Crop Evol 57: 293-306.
5. Benor S, Fuchs J, Blattner FR (2011) Genome size variation in Corchorusolitorius (Malvaceae s. l.) and correlation with elevation and phenotypic traits. Genome 54: 578-585.
6. Bensch S, Akesson M (2005) Ten years of AFLP in ecology and evolution: why so few animals? Mol Ecol 14: 2899-2914.
7. Chae SS, Warde WD (2006) Effect of using principal coordinates and principal components on retrieval of clusters. Comput Stat Data Anal 50: 1407-1417.
8. Dansi A, Adjatin A, Adoukonou-Sagbadja H, Falad'e V, Yedomonhan H, Odou D, Dossou B (2008) Traditional leafy vegetables and their use in the Benin Republic. Genet Res Crop Evol 55: 1239-1256.
9. Edmonds JM (1990) Herbarium survey of African Corchorus L. species. Systematic and Ecogeographic Studies on Crop Genepools 4. International Board for Plant Genetic Resources, Rome.
10. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14: 2611-2620.
11. Falush DM, Stephens M, Pritchard JK (2007) Inference of population structure using multilocus genotype data: dominant markers and null alleles. Mol Ecol Notes 7: 574-578.
12. Gao HS, Williamson S, Bustamante CD (2007) A Markov Chain Monte Carlo approach for joint inference of population structure and inbreeding rates from multilocus genotype data. Genetics 176: 1635-1651.
13. Gould SJ, Johnston RF (1972) Geographic variation. Ann Rev Ecol 3: 457-498.
14. Gower JC (1971) A general coefficient of similarity and some of its properties. Biometrics 27: 857-871.
15. Grubben GJH, Denton OA (2004) Plant resources of tropical Africa 2. Vegetables. PROTA Foundation, Wageningen, CTA.
16. Heywood VH (1993) Flowering plants of the world. Oxford University Press, New York.
17. Khan MSY, Bano S, Javed K, Mueed MA (2006) A comprehensive review on the chemistry and pharmacology of Corchorus species: a source of cardiac glycosides, triterpenoids, ionones, flavonoids, coumarins, steroids and some other compounds. J Sci Ind Res India 65: 283-298.
18. Kinabo J, Mnkeni AP, Nyaruhucha CNM, Msuya J, Haug A, Ishengoma J (2006) Feeding frequency and nutrient content of foods commonly consumed in the Iringa and Morogoro regions in Tanzania. Int J Food Sci Nutr 57: 9-17.
19. Kovach WL (2005) MVSP: a multivariate statistical package for Windows, ver. 3. 13q. Kovach Computing Services, Pentraeth, Wales, UK.
20. Krebs G (2001) Tiliaceae. In: Hanelt P, Institute of Plant Genetics and Crop Plant Research (eds) Mansfeld's encyclopedia of agricultural and horticultural crops. Volume 3. Angiospermae-Dicotyledones: Malpighiaceae-Oleaceae. Springer, Berlin, pp 1560-1567.
21. Kundu BC (1951) Origin of jute. Indian J Genet Plant Breed 11: 95-99.
22. Kundu BC (1956) Jute-World's most important bast fibre. Econ Bot 10: 103-133.
23. Lim TM, Khoo HW (1985) Sampling properties of Gower's general coefficient of similarity. Ecology 66: 1682-1685.
24. McDermott JM, McDonald BA (1993) Gene flow in plant pathosystems. Annu Rev Phytopathol 31: 353-373.
25. Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70: 3321-3323.
26. Nei M, Li WH (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76: 5269-5273.
27. Palit P, Sasmal BC, Bhattacharryya AC (1996) Germplasm diversity and estimate of genetic advance of four morpho-physiological traits in a world collection of jute. Euphytica 90: 89-110.
28. Palve SM, Sinha MK (2005) Genetic variation and interrelationships among fibre yield attributes in secondary gene pool of Corchorus spp. SABRO J Breed Genet 37: 1-11.
29. Peakal R, Smouse PE (2006) GENALEX 6: genetic analysis in Excel. Population genetics software for teaching and research. Mol Ecol Notes 6: 288-295.
30. Pleines T, Blattner FR (2008) Phylogeographic implications of an AFLP phylogeny of the American diploid Hordeum species (Poaceae: Triticeae). Taxon 57: 875-881.
31. Potokina E, Blattner FR, Alexandrova T, Bachmann K (2002) AFLP diversity in the common vetch (Vicia sativa L.) on the world scale. Theor Appl Genet 105: 58-67.
32. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
33. Qi J, Zhou D, Wu W, Lin L, Wu J, Fang P (2003a) Application of ISSR technology in genetic diversity detection of jute. Ying Yong Sheng Tai Xue Bao 14: 1473-1477.
34. Qi J, Zhou D, Wu W, Lin L, Fang P, Wu J (2003b) The application of RAPD technology in genetic diversity detection of jute. Yi Chuan Xue Bao 30: 926-932.
35. Roy A, Bandyopadhyay A, Mahaptra AK, Ghosh SK, Singh NK, Bansal KC, Koundal KR, Mohapatra T (2006) Evaluation of genetic diversity in jute (Corchorus species) using STMS, ISSR and RAPD markers. Plant Breed 125: 292-297.
36. Swofford DL (2002) PAUP*. Phylogenetic analysis using parsimony (*and other methods), ver. 4. 0b10. Sinauer Associates, Sunderland.
37. The Natural History Museum (2007) Jute. Retrieved on March 2008 from http://www. nhm. ac. uk/jdsml/nature-online/seeds-of-trade/.
38. Thorpe RS (1976) Biometric analysis of geographic variation and racial affinities. Biol Rev 51: 407-452.
39. Tukey JW (1977) Exploratory data analysis. Addison-Wesley Publishing Company, Reading, Mass.
40. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23: 4407-4414.
41. Westphal-Stevels JMC (1986) Local vegetables in Cameroon: Corchorus species used as a vegetable. Acta Horticult 182: 423-425.
42. Wild H (1984) Corchorus. In: Leistner OA (ed) Flora of Southern Africa 21 (1: Tiliaceae). Department of Agriculture, Botanical Research Institute, Pretoria, pp 32-42.
43. Yeh FC, Young RC, Boyle T (1999) POPGENE, Microsoft Windows-based freeware for population genetics analysis. Molecular Biology and Biotechnology Center, University of Alberta, Alberta.
44. Yuan QJ, Zhang ZY, Hu J, Guo LP, Shao AJ, Huang LQ (2010) Impacts of recent cultivation on genetic diversity pattern of a medicinal plant, Scutellaria baicalensis (Lamiaceae). BMC Genetics 11: 29.