Roseivivax sediminis sp. nov., a moderately halophilic bacterium isolated from salt mine sediment

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 8, 2012, Pages 1890-1895

  Xiao, Wei ^a   Wang, Yong Xia ^a   Liu, Ji Hui ^a   Wang, Zhi Gang ^a   Zhang, Xiao Xia ^b   Ji, Kai Yan ^a   Lai, Yong Hong ^a   Wen, Meng Liang ^a   Cui, Xiao Long ^a  

^a YUNNAN UNIVERSITY   (China)

^b INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AMINOLIPID; CARDIOLIPIN; FATTY ACID; LIPID; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; QUINONE DERIVATIVE; RNA 16S; SODIUM CHLORIDE; UBIQUINONE; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GROWTH; BACTERIUM COLONY; BACTERIUM ISOLATION; BIOCHEMICAL COMPOSITION; CHINA; DNA BASE COMPOSITION; GRAM NEGATIVE ANAEROBIC BACTERIA; HALOPHILIC BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHYLOGENY; PHYSIOLOGY; PRIORITY JOURNAL; ROSEIVIVAX HALODURANS; ROSEIVIVAX HALOTOLERANS; ROSEIVIVAX LENTUS; ROSEIVIVAX SEDIMINIS; SEDIMENT;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHINA; DNA, BACTERIAL; FATTY ACIDS; GEOLOGIC SEDIMENTS; MINING; MOLECULAR SEQUENCE DATA; PHOSPHOLIPIDS; PHYLOGENY; RHODOBACTERACEAE; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; SOIL MICROBIOLOGY;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; ROSEIVIVAX; ROSEIVIVAX HALODURANS; ROSEIVIVAX HALOTOLERANS;

EID: 84864718981     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.037119-0     Document Type: Article

References (31)

1. Allgaier, M., Uphoff, H., Felske, A. & Wagner-Döbler, I. (2003). Aerobic anoxygenic photosynthesis in Roseobacter clade bacteria from diverse marine habitats. Appl Environ Microbiol 69, 5051-5059.
2. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
3. Bauer, A. W., Kirby, W. M., Sherris, J. C. & Turck, M. (1966). Antibiotic susceptibility testing by a standardized single disk method. Am J Clin Pathol 45, 493-496.
4. Cho, J. C. & Giovannoni, S. J. (2006). Pelagibaca bermudensis gen. nov., sp. nov., a novel marine bacterium within the Roseobacter clade in the order Rhodobacterales. Int J Syst Evol Microbiol 56, 855-859.
5. Clarke, P. H. (1953). Hydrogen sulphide production by bacteria. J Gen Microbiol 8, 397-407.
6. Cohen-Bazire, G., Sistrom, W. R. & Stanier, R. Y. (1957). Kinetic studies of pigment synthesis by non-sulfur purple bacteria. J Cell Physiol 49, 25-68.
7. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
8. Cui, X.-L., Mao, P.-H., Zeng, M., Li, W.-J., Zhang, L.-P., Xu, L.-H. & Jiang, C.-L. (2001). Streptimonospora salina gen. nov., sp. nov., a new member of the family Nocardiopsaceae. Int J Syst Evol Microbiol 51, 357-363.
9. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
10. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
11. Felsenstein, J. (1993). PHYLIP (phylogeny inference package), version 3.5. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
12. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
13. Høvik Hansen, G. H. & Sørheim, R. (1991). Improved method for phenotypical characterization of marine bacteria. J Microbiol Methods 13, 231-241.
14. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
15. Kovacs, N. (1956). Identification of Pseudomonas pyocyanea by the oxidase reaction. Nature 178, 703-704.
16. Leifson, E. (1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183-1184.
17. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
18. Minnikin, D. E., Collins, M. D. & Goodfellow, M. (1979). Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47, 87-95.
19. Murray, R. G. E., Doetsch, R. N. & Robinow, C. F. (1994). Determinative and cytological light microscopy. In Methods for General Molecular Bacteriology, pp. 21-41. Edited by P.Gerhardt, R.G. E.Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
20. Park, S., Kang, S.-J., Oh, T.-K. & Yoon, J.-H. (2010). Roseivivax lentus sp. nov., isolated from a tidal flat sediment, and emended description of the genus Roseivivax Suzuki et al. 1999. Int J Syst Evol Microbiol 60, 1113-1117.
21. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
22. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 20, 16.
23. Skerman, V. B. D. (1967). A Guide to the Identification of the Genera of Bacteria. Baltimore: Williams and Wilkins.
24. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Microbiology, pp. 611-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
25. Suzuki, T., Muroga, Y., Takahama, M. & Nishimura, Y. (1999). Roseivivax halodurans gen. nov., sp. nov. and Roseivivax halotolerans sp. nov., aerobic bacteriochlorophyll-containing bacteria isolated from a saline lake. Int J Syst Bacteriol 49, 629-634.
26. Suzuki, M., Nakagawa, Y., Harayama, S. & Yamamoto, S. (2001). Phylogenetic analysis and taxonomic study of marine Cytophaga-like bacteria: proposal for Tenacibaculum gen. nov. with Tenacibaculum maritimum comb. nov. and Tenacibaculum ovolyticum comb. nov., and description of Tenacibaculum mesophilum sp. nov. and Tenacibaculum amylolyticum sp. nov. Int J Syst Evol Microbiol 51, 1639-1652.
27. Tamaoka, J., Katayama-Fujimura, Y. & Kuraishi, H. (1983). Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. J Appl Bacteriol 54, 31-36.
28. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
29. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
30. Tindall, B. J. (1990a). A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13, 128-130.
31. Tindall, B. J. (1990b). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.