Possible novel roles of poly(rC)-binding protein 1 in SH-SY5Y neurocytes: An analysis using a dynamic Bayesian network

Neuroscience Bulletin

Volumn 28, Issue 3, 2012, Pages 282-290

  Huo, Li Rong ^a,b   Liang, Jian Tao ^c   Zou, Jun Hua ^b   Wang, Lan Ying ^a   Li, Qi ^d   Wang, Xiao Min ^a  

^a CAPITAL MEDICAL UNIVERSITY   (China)

^b PEKING UNIVERSITY   (China)

^c CAPITAL MEDICAL UNIVERSITY   (China)

^d Genminix Informatics Ltd Co   (China)

Author keywords

Bayesian network; Overexpression; PCBP1; RNA interference

Indexed keywords

ACYLTRANSFERASE; FOLLISTATIN; HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN; HISTONE H2AX; HISTONE H2B; HISTONE H2BFS; MITOGEN ACTIVATED PROTEIN KINASE KINASE 2; POLYCYTIDYLIC ACID BINDING PROTEIN 1; PROTEIN P53; PROTEIN V FOS; SPERMIDINE ACETYLATRANSFERASE; TRANSFORMING GROWTH FACTOR BETA; UNCLASSIFIED DRUG; WNT PROTEIN; WNT7B PROTEIN;

APOPTOSIS; ARTICLE; BAYES THEOREM; CELL CYCLE; CONTROLLED STUDY; FOS GENE; FST GENE; GENE; GENE EXPRESSION REGULATION; GENETIC REGULATION; H2AFX GENE; H2BFS GENE; HUMAN; HUMAN CELL; MAP2K2 GENE; NERVE CELL; NUCLEOTIDE SEQUENCE; PROTEIN FUNCTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SAT GENE; SIGNAL TRANSDUCTION; TP53 GENE; WNT7B GENE;

BAYES THEOREM; CELL LINE, TUMOR; GENE REGULATORY NETWORKS; HETEROGENEOUS-NUCLEAR RIBONUCLEOPROTEINS; HUMANS; NEURONS; SIGNAL TRANSDUCTION;

EID: 84864699180     PISSN: 16737067     EISSN: 19958218     Source Type: Journal    
DOI: 10.1007/s12264-012-1242-6     Document Type: Article

References (43)

1. Leffers H, Dejgaard K, Celis JE. Characterisation of two major cellular poly (rC)-binding human proteins, each containing three Khomologous (KH) domains. Eur J Biochem 1995, 230:447-453.
2. Adams DJ, Beveridge DJ, van der Weyden L, Mangs H, Leedman PJ, Morris BJ. HADHB, HuR, and CP1 bind to the distal 3-Untranslated region of human renin mRNA and differentially modulate Renin expression. J Biol Chem 2003, 278:44894-44903.
3. Guillonneau F, Guieysse AL, Le Caer JP, Rossier J, Praseuth D. Selection and identification of proteins bound to DNA triple-helical structures by combination of 2D-electrophoresis and MALDI-TOF mass spectrometry. Nucleic Acids Res 2001, 29:2427-2436.
4. Chkheidze AN, Liebhaber SA. A novel set of nuclear localization signals determine distributions of the áCP RNA-binding proteins. Mol Cell Biol 2003, 23:8405-8415.
5. Pillai MR, Chacko P, Kesari LA, Jayaprakash PG, Jayaram HN, Antony AC. Expression of folate receptors and heterogeneous nuclear ribonucleoprotein E1 in women with human papillomavirus mediated transformation of cervical tissue to cancer. J Clin Pathol 2003, 56:569-574.
6. Ostareck-Lederer A, Ostareck DH. Control of mRNA translation and stability in haematopoietic cells: the function of hnRNPs K and E1/E2. Biol Cell 2004, 96:407-411.
7. Berry AM, Flock KE, Loh HH, Ko JL. Molecular basis of cellular localization of poly C binding protein 1 in neuronal cells. Biochem Biophys Res Commun 2006, 349:1378-1386.
8. Xu X, Joh HD, Pin S, Schiller NI, Prange C, Burger PC, et al. Expression of multiple larger-sized transcripts for several genes in oligodendrogliomas: potential markers for glioma subtype. Cancer Lett 2001, 171:67-77.
9. Thyagarajan A, Szaro BG. Phylogenetically conserved binding of specific k homology domain proteins to the 3'-untranslated region of the vertebrate middle neurofilament mRNA. J Biol Chem 2004, 279:49680-49688.
10. Thyagarajan A, Szaro BG. Dynamic endogenous association of neurofilament mRNAs with K-homology domain ribonucleoproteins in developing cerebral cortex. Brain Res 2008, 1189:33-42.
11. Trends Biochem Sci 2004, 29:265-273.
12. Miller JR, Hocking AM, Brown JD, Moon RT. Mechanism and function of signal transduction by the Wnt/beta catenin and Wnt/Ca pathways. Oncogene 1999, 18:7860-7872.
13. Ouyang X, Jessen WJ, Al-Ahmadie H, Serio AM, Lin Y, Shih WJ, et al. Activator protein-1 transcription factors are associated with progression and recurrence of prostate cancer. Cancer Res 2008, 68:2132-2144.
14. Cadigan KM, Nusse R. Wnt signaling: A common theme in animal development. Genes Dev 1997, 11:3286-3305.
15. Garda AL, Puelles L, Rubensteinj JL, Medina L. Expression patterns of Wnt8b and Wnt7b in the chicken embryonic brain suggest a correlation with forebrain patterning centers and morphogenesis. Neuroscience 2002, 113:689-698.
16. Holst CM, Nevsten P, Johansson F, Carlemalm E, Oredsson SM. Subcellular distribution of spermidine/spermine N (1)-acetyltransferase. Cell Biol Int 2008, 32:39-47.
17. Wang X, Feith DJ, Welsh P, Coleman CS, Lopez C, Woster PM, et al. Studies of the mechanism by which increased spermidine/spermine N1-acetyltransferase activity increases susceptibility to skin carcinogenesis. Carcinogenesis 2007, 28:2404-2411.
18. Arents G, Moudrianakis EN. Topography of the histone octamer surface: repeating structural motifs utilized in the docking of nucleo-roles of H2A and H2B in transcriptional repression 2551 somal DNA. Proc Natl Acad Sci U S A 1993, 90:10489-10493.
19. Ismail IH, Hendzel MJ. The gamma-H2A. X: is it just a surrogate marker of double-strand breaks or much more? Environ Mol Mutagen 2008, 49:73-82.
20. Covelo G, Sarandeses CS, Diaz-Jullien C, Freire M. Prothymosin alpha interacts with free core histones in the nucleus of dividing cells. J Biochem 2006, 140:627-637.
21. Srivastava N, Gochhait S, Gupta P, Bamezai RN. Copy number alterations of the H2AFX gene in sporadic breast cancer patients. Cancer Genet Cytogenet 2008, 180:121-128.
22. Huo LR, Zhong N. Identification of transcripts and translateants targeted by overexpressed PCBP1. Biochim Biophys Acta 2008, 1784:1524-1533.
23. Huo LR, Ju W, Yan M, Zou JH, Yan W, He B, et al. Identification of differentially expressed transcripts and translatants targeted by knock-down of endogenous PCBP1. Biochim Biophys Acta 2010, 1804:1954-1964.
24. Kim JH, Hahm B, Kim YK, Choi M, Jang SK. Protein-protein interaction among hnRNPs shuttling between nucleus and cytoplasm. J Mol Biol 2000, 298:395-405.
25. Zhong N, Radu G, Ju W, Brown WT. Novel progerin-interactive partner proteins hnRNP E1, EGF, Mel 18, and UBC9 interact with lamin A/C. Biochem Biophys Res Commun 2005, 338:855-861.
26. Zou M, Conzen SD. A new dynamic Bayesian network (DBN) approach for identifying gene regulatory networks from time course microarray data. Bioinformatics 2005, 21:71-79.
27. Imoto S, Goto T, Miyano S. Estimation of genetic networks and functional structures between genes by using Bayesian network and nonparametric regression. Pac Symp Biocomput 2002, 7:175-186.
28. Kim SY, Imoto S, Miyano S. Inferring gene networks from time series microarray data using dynamic Bayesian networks. Brief Bioinform 2003, 4:228-235.
29. Van Gurp M, Festjens N, Van Loo G, Saelens X, Vandenabeele P. Mitochondrial intermembrane proteins in cell death. Biochem Biophys Res Commun 2003, 304:487-497.
30. Constantinou C, Clemens MJ. Regulation of translation factors eIF4GI and 4E-BP1 during recovery of protein synthesis from inhibition by p53. Cell Death Differ 2007, 14:576-585.
31. Syrigos KN, Harrington KJ, Pignatelli M. Role of adhesion molecules in bladder cancer: an important part of the jigsaw. Urology 1999, 53:428-434.
32. Attisano L, Wrana JL. Signal transduction by the TGF-β superfamily. Science 2002, 296:1646-1647.
33. Dijke PT, Hill CS. New insights into TGF-beta-Smad signaling. Trends Biochem Sci 2004, 29:265-273.
34. Miller JR, Hocking AM, Brown JD, Moon RT. Mechanism and function of signal transduction by the Wnt/beta catenin and Wnt/Ca pathways. Oncogene 1999, 18:7860-7872.
35. Ouyang X, Jessen WJ, Al-Ahmadie H, Serio AM, Lin Y, Shih WJ, et al. Activator protein-1 transcription factors are associated with progression and recurrence of prostate cancer. Cancer Res 2008, 68:2132-2144.
36. Cadigan KM, Nusse R. Wnt signaling: A common theme in animal development. Genes Dev 1997, 11:3286-3305.
37. Garda AL, Puelles L, Rubensteinj JL, Medina L. Expression patterns of Wnt8b and Wnt7b in the chicken embryonic brain suggest a correlation with forebrain patterning centers and morphogenesis. Neuroscience 2002, 113:689-698.
38. Holst CM, Nevsten P, Johansson F, Carlemalm E, Oredsson SM. Subcellular distribution of spermidine/spermine N (1)-acetyltransferase. Cell Biol Int 2008, 32:39-47.
39. Wang X, Feith DJ, Welsh P, Coleman CS, Lopez C, Woster PM, et al. Studies of the mechanism by which increased spermidine/spermine N1-acetyltransferase activity increases susceptibility to skin carcinogenesis. Carcinogenesis 2007, 28:2404-2411.
40. Arents G, Moudrianakis EN. Topography of the histone octamer surface: repeating structural motifs utilized in the docking of nucleo-roles of H2A and H2B in transcriptional repression 2551 somal DNA. Proc Natl Acad Sci U S A 1993, 90:10489-10493.
41. 2A. X: is it just a surrogate marker of double-strand breaks or much more? Environ Mol Mutagen 2008, 49:73-82.
42. Covelo G, Sarandeses CS, Diaz-Jullien C, Freire M. Prothymosin alpha interacts with free core histones in the nucleus of dividing cells. J Biochem 2006, 140:627-637.
43. Srivastava N, Gochhait S, Gupta P, Bamezai RN. Copy number alterations of the H2AFX gene in sporadic breast cancer patients. Cancer Genet Cytogenet 2008, 180:121-128.