SCOPUS 정보 검색 플랫폼

Molecular BioSystems

Volumn 8, Issue 9, 2012, Pages 2233-2241

Inferring gene functions through dissection of relevance networks: Interleaving the intra- and inter-species views

(4) Klie, Sebastian a Mutwil, Marek a Persson, Staffan a Nikoloski, Zoran a

a MAX PLANCK INSTITUTE OF MOLECULAR PLANT PHYSIOLOGY (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ANIMAL; BIOLOGY; GENE REGULATORY NETWORK; GENETICS; HUMAN; METHODOLOGY; REVIEW;

ALGORITHMS; ANIMALS; COMPUTATIONAL BIOLOGY; GENE REGULATORY NETWORKS; HUMANS;

EID: 84864657071 PISSN: 1742206X EISSN: 17422051 Source Type: Journal
DOI: 10.1039/c2mb25089f Document Type: Review

Times cited : (8)

References (63)

1
- 67650070937
- K. R. Christie E. L. Hong J. M. Cherry Trends Microbiol. 2009 17 286 294
- (2009) Trends Microbiol. , vol.17 , pp. 286-294
- Christie, K.R.¹ Hong, E.L.² Cherry, J.M.³

2
- 84862234802
- P. Lamesch T. Z. Berardini D. Li D. Swarbreck C. Wilks R. Sasidharan R. Muller K. Dreher D. L. Alexander M. Garcia-Hernandez A. S. Karthikeyan C. H. Lee W. D. Nelson L. Ploetz S. Singh A. Wensel E. Huala Nucleic Acids Res. 2012 40 D1202 D1210
- (2012) Nucleic Acids Res. , vol.40
- Lamesch, P.¹ Berardini, T.Z.² Li, D.³ Swarbreck, D.⁴ Wilks, C.⁵ Sasidharan, R.⁶ Muller, R.⁷ Dreher, K.⁸ Alexander, D.L.⁹ Garcia-Hernandez, M.¹⁰ Karthikeyan, A.S.¹¹ Lee, C.H.¹² Nelson, W.D.¹³ Ploetz, L.¹⁴ Singh, S.¹⁵ Wensel, A.¹⁶ Huala, E.¹⁷

3
- 33748776559
- I. Frieberg Briefings Bioinf. 2006 7 225 242
- (2006) Briefings Bioinf. , vol.7 , pp. 225-242
- Frieberg, I.¹

4
- 0030801002
- S. F. Altschul T. L. Madden A. A. Schaffer J. Zhang Z. Zhang W. Miller D. J. Lipman Nucleic Acids Res. 1997 25 3389 3402
- (1997) Nucleic Acids Res. , vol.25 , pp. 3389-3402
- Altschul, S.F.¹ Madden, T.L.² Schaffer, A.A.³ Zhang, J.⁴ Zhang, Z.⁵ Miller, W.⁶ Lipman, D.J.⁷

5
- 33845864703
- P. Hu G. Bader D. A. Wigle A. Emili Nat. Rev. Cancer 2007 7 23 34
- (2007) Nat. Rev. Cancer , vol.7 , pp. 23-34
- Hu, P.¹ Bader, G.² Wigle, D.A.³ Emili, A.⁴

6
- 84898384347
- J. Gerlt P. Babbitt Genome Biol. 2000 1 reviews0005.0001
- (2000) Genome Biol. , vol.1 , pp. 00050001
- Gerlt, J.¹ Babbitt, P.²

7
- 0033618555
- E. M. Marcotte M. Pellegrini H. L. Ng D. W. Rice T. O. Yeates D. Eisenberg Science 1999 285 751 753
- (1999) Science , vol.285 , pp. 751-753
- Marcotte, E.M.¹ Pellegrini, M.² Ng, H.L.³ Rice, D.W.⁴ Yeates, T.O.⁵ Eisenberg, D.⁶

8
- 0033523854
- E. M. Marcotte M. Pellegrini M. J. Thompson D. W. Rice T. O. Yeates D. Eisenberg Nature 1999 402 83 86
- (1999) Nature , vol.402 , pp. 83-86
- Marcotte, E.M.¹ Pellegrini, M.² Thompson, M.J.³ Rice, D.W.⁴ Yeates, T.O.⁵ Eisenberg, D.⁶

9
- 33947252154
- 10.1038/msb4100129
- R. Sharan I. Ulitsky R. Shamir Mol. Syst. Biol. 2007 3 10.1038/msb4100129
- (2007) Mol. Syst. Biol. , vol.3
- Sharan, R.¹ Ulitsky, I.² Shamir, R.³

10
- 57749195712
- Z. Wang M. Gerstein M. Snyder Nat. Rev. Genet. 2009 10 57 63
- (2009) Nat. Rev. Genet. , vol.10 , pp. 57-63
- Wang, Z.¹ Gerstein, M.² Snyder, M.³

11
- 0034691202
- J. K. Joung E. I. Ramm C. O. Pabo Proc. Natl. Acad. Sci. U. S. A. 2000 97 7382 7387
- (2000) Proc. Natl. Acad. Sci. U. S. A. , vol.97 , pp. 7382-7387
- Joung, J.K.¹ Ramm, E.I.² Pabo, C.O.³

12
- 79960564239
- S. Hempel A. Koseska Z. Nikoloski J. Kurths BMC Bioinf. 2011 12 292
- (2011) BMC Bioinf. , vol.12 , pp. 292
- Hempel, S.¹ Koseska, A.² Nikoloski, Z.³ Kurths, J.⁴

13
- 13844260963
- W.H. Freeman and Company, New York
- T. C. Hesterberg, D. S. Moore, S. Monaghan, A. Clipson and R. Epstein, The Practice of Business Statistics, W.H. Freeman and Company, New York, 2005
- (2005) The Practice of Business Statistics
- Hesterberg, T.C.¹ Moore, D.S.² Monaghan, S.³ Clipson, A.⁴ Epstein, R.⁵

14
- 0004249246
- W.H. Freeman and Company, New York
- R. R. Sokal and F. J. Rohlf, Biometry, W.H. Freeman and Company, New York, 2003
- (2003) Biometry
- Sokal, R.R.¹ Rohlf, F.J.²

15
- 33645821454
- X. Guo R. Liu C. D. Shriver H. Hu M. N. Liebman Bioinformatics 2006 22 967 973
- (2006) Bioinformatics , vol.22 , pp. 967-973
- Guo, X.¹ Liu, R.² Shriver, C.D.³ Hu, H.⁴ Liebman, M.N.⁵

16
- 84926662675
- T. Cover P. Hart IEEE Trans. Inf. Theory 1967 13 21 27
- (1967) IEEE Trans. Inf. Theory , vol.13 , pp. 21-27
- Cover, T.¹ Hart, P.²

17
- 73249138596
- M. Mutwil B. Usadel M. Schutte A. Loraine O. Ebenhoh S. Persson Plant Physiol. 2010 152 29 43
- (2010) Plant Physiol. , vol.152 , pp. 29-43
- Mutwil, M.¹ Usadel, B.² Schutte, M.³ Loraine, A.⁴ Ebenhoh, O.⁵ Persson, S.⁶

18
- 73249114746
- T. Obayashi K. Kinoshita DNA Res. 2009 16 249 260
- (2009) DNA Res. , vol.16 , pp. 249-260
- Obayashi, T.¹ Kinoshita, K.²

19
- 79955581503
- M. Mutwil S. Klie T. Tohge F. M. Giorgi O. Wilkins M. M. Campbell A. R. Fernie B. Usadel Z. Nikoloski S. Persson Plant Cell 2011 23 895 910
- (2011) Plant Cell , vol.23 , pp. 895-910
- Mutwil, M.¹ Klie, S.² Tohge, T.³ Giorgi, F.M.⁴ Wilkins, O.⁵ Campbell, M.M.⁶ Fernie, A.R.⁷ Usadel, B.⁸ Nikoloski, Z.⁹ Persson, S.¹⁰

20
- 20444485252
- A. A. Millar F. Gubler Plant Cell 2005 17 705 721
- (2005) Plant Cell , vol.17 , pp. 705-721
- Millar, A.A.¹ Gubler, F.²

21
- 48449091196
- M. Mutwil J. Obro W. G. T. Willats S. Persson Nucleic Acids Res. 2008 36 W320 W326
- (2008) Nucleic Acids Res. , vol.36
- Mutwil, M.¹ Obro, J.² Willats, W.G.T.³ Persson, S.⁴

22
- 0142077573
- A. L. Barabasi R. Albert Phys. Rev. Lett. 2000 85 5234 5237
- (2000) Phys. Rev. Lett. , vol.85 , pp. 5234-5237
- Barabasi, A.L.¹ Albert, R.²

23
- 0742305866
- A.-L. Barabasi Z. N. Oltvai Nat. Rev. Genet. 2004 5 101 113
- (2004) Nat. Rev. Genet. , vol.5 , pp. 101-113
- Barabasi, A.-L.¹ Oltvai, Z.N.²

24
- 77649168721
- J. Ruan A. Dean W. Zhang BMC Syst. Biol. 2010 4 8
- (2010) BMC Syst. Biol. , vol.4 , pp. 8
- Ruan, J.¹ Dean, A.² Zhang, W.³

25
- 51549093662
- V. Srinivasasainagendra G. P. Page T. Mehta I. Coulibaly A. E. Loraine Plant Physiol. 2008 147 1004 1016
- (2008) Plant Physiol. , vol.147 , pp. 1004-1016
- Srinivasasainagendra, V.¹ Page, G.P.² Mehta, T.³ Coulibaly, I.⁴ Loraine, A.E.⁵

26
- 79951562208
- T. Obayashi K. Nishida K. Kasahara K. Kinoshita Plant Cell Physiol. 2011 52 213 219
- (2011) Plant Cell Physiol. , vol.52 , pp. 213-219
- Obayashi, T.¹ Nishida, K.² Kasahara, K.³ Kinoshita, K.⁴

27
- 77956674928
- S. P. Ficklin F. Luo F. A. Feltus Plant Physiol. 2010 154 13 24
- (2010) Plant Physiol. , vol.154 , pp. 13-24
- Ficklin, S.P.¹ Luo, F.² Feltus, F.A.³

28
- 79956139639
- K. Mochida Y. Uehara-Yamaguchi T. Yoshida T. Sakurai K. Shinozaki Plant Cell Physiol. 2011 52 785 803
- (2011) Plant Cell Physiol. , vol.52 , pp. 785-803
- Mochida, K.¹ Uehara-Yamaguchi, Y.² Yoshida, T.³ Sakurai, T.⁴ Shinozaki, K.⁵

29
- 60549111634
- P. Langfelder S. Horvath BMC Bioinf. 2008 9 559
- (2008) BMC Bioinf. , vol.9 , pp. 559
- Langfelder, P.¹ Horvath, S.²

30
- 38549168494
- F. Luo Y. Yang J. Zhong H. Gao L. Khan D. Thompson J. Zhou BMC Bioinf. 2007 8 299
- (2007) BMC Bioinf. , vol.8 , pp. 299
- Luo, F.¹ Yang, Y.² Zhong, J.³ Gao, H.⁴ Khan, L.⁵ Thompson, D.⁶ Zhou, J.⁷

31
- 70449115789
- B. Usadel T. Obayashi M. Mutwil F. M. Giorgi G. W. Bassel M. Tanimoto A. Chow D. Steinhauser S. Persson N. J. Provart Plant, cell Environ. 2009 32 1633 1651
- (2009) Plant, Cell Environ. , vol.32 , pp. 1633-1651
- Usadel, B.¹ Obayashi, T.² Mutwil, M.³ Giorgi, F.M.⁴ Bassel, G.W.⁵ Tanimoto, M.⁶ Chow, A.⁷ Steinhauser, D.⁸ Persson, S.⁹ Provart, N.J.¹⁰

32
- 34249697574
- K. Aoki Y. Ogata D. Shibata Plant Cell Physiol. 2007 48 381 390
- (2007) Plant Cell Physiol. , vol.48 , pp. 381-390
- Aoki, K.¹ Ogata, Y.² Shibata, D.³

33
- 0003725141
- Addison-Wesley, Reading, MA
- D. Sankoff and J. Kruskal, Time Warps, String Edits, and Macromolecules: The Theory and Practice of Sequence Comparison, Addison-Wesley, Reading, MA, 1983
- (1983) Time Warps, String Edits, and Macromolecules: The Theory and Practice of Sequence Comparison
- Sankoff, D.¹ Kruskal, J.²

34
- 0000924593
- G. Golub Numer. Math. 1965 7 206 216
- (1965) Numer. Math. , vol.7 , pp. 206-216
- Golub, G.¹

35
- 84898319578
- B. Christos W. M. Michael D. Petros Proceedings of the Twentieth Annual ACM-SIAM Symposium on Discrete Algorithms, SODA'09 2009 968 977
- (2009) Proceedings of the Twentieth Annual ACM-SIAM Symposium on Discrete Algorithms, SODA'09 , pp. 968-977
- Christos, B.¹ Michael, W.M.² Petros, D.³

36
- 84947205653
- K. Beyer J. Goldstein R. Ramakrishnan U. Shaft Lect. Notes Comput. Sci. 1999 1540 217 235
- (1999) Lect. Notes Comput. Sci. , vol.1540 , pp. 217-235
- Beyer, K.¹ Goldstein, J.² Ramakrishnan, R.³ Shaft, U.⁴

37
- 84898289927
- T. Bernecker, M. E. Houle, H.-P. Kriegel, P. Kröger, M. Renz, E. Schubert and A. Zimek, Advances in Spatial and Temporal Databases, Lecture Notes in Computer Science, 2011
- (2011) Advances in Spatial and Temporal Databases, Lecture Notes in Computer Science
- Bernecker, T.¹ Houle, M.E.² Kriegel, H.-P.³ Kröger, P.⁴ Renz, M.⁵ Schubert, E.⁶ Zimek, A.⁷

38
- 58149197587
- T. Obayashi S. Hayashi M. Saeki H. Ohta K. Kinoshita Nucleic Acids Res. 2009 37 D987 D991
- (2009) Nucleic Acids Res. , vol.37
- Obayashi, T.¹ Hayashi, S.² Saeki, M.³ Ohta, H.⁴ Kinoshita, K.⁵

39
- 0034069495
- M. Ashburner Nat. Genet. 2000 25 25 29
- (2000) Nat. Genet. , vol.25 , pp. 25-29
- Ashburner, M.¹

40
- 12144291195
- O. Thimm O. Blasing Y. Gibon A. Nagel S. Meyer P. Kruger J. Selbig L. A. Muller a. S. Y. Rhee M. Stitt Plant J. 2004 37 914 939
- (2004) Plant J. , vol.37 , pp. 914-939
- Thimm, O.¹ Blasing, O.² Gibon, Y.³ Nagel, A.⁴ Meyer, S.⁵ Kruger, P.⁶ Selbig, J.⁷ Muller, L.A.⁸ Rhee, A.S.Y.⁹ Stitt, M.¹⁰

41
- 49549101132
- J. Pandey M. Koyutürk S. Subramaniam A. Grama Bioinformatics 2008 24 i28 i34
- (2008) Bioinformatics , vol.24
- Pandey, J.¹ Koyutürk, M.² Subramaniam, S.³ Grama, A.⁴

42
- 0003033112
- P. Resnik, Proceedings of the 14th International Joint Conference on Artificial Intelligence, 1995, pp. 448-453
- (1995) Proceedings of the 14th International Joint Conference on Artificial Intelligence , pp. 448-453
- Resnik, P.¹

43
- 0005180705
- D. Lin, Proceedings of the 15th International Conference on Machine Learning, 1998, pp. 296-304
- (1998) Proceedings of the 15th International Conference on Machine Learning , pp. 296-304
- Lin, D.¹

44
- 85087282802
- J. J. Jiang and D. W. Conrath, Proceedings of the 10th International Conference on Research in Computational Linguistics, 1997, pp. 19-33
- (1997) Proceedings of the 10th International Conference on Research in Computational Linguistics , pp. 19-33
- Jiang, J.J.¹ Conrath, D.W.²

45
- 0037480738
- P. W. Lord R. D. Stevens A. Brass C. A. Goble Bioinformatics 2003 19 1275 1283
- (2003) Bioinformatics , vol.19 , pp. 1275-1283
- Lord, P.W.¹ Stevens, R.D.² Brass, A.³ Goble, C.A.⁴

46
- 34248576303
- A. Schlicker C. Huthmacher F. Ramirez T. Lengauer M. Albrecht Bioinformatics 2007 23 859 865
- (2007) Bioinformatics , vol.23 , pp. 859-865
- Schlicker, A.¹ Huthmacher, C.² Ramirez, F.³ Lengauer, T.⁴ Albrecht, M.⁵

47
- 30344446931
- J. Sevilla V. Segura A. Podhorski E. Guruceaga J. M. Mato L. A. Martinez-Cruz F. J. Corrales A. Rubio IEEE/ACM Trans. Comput. Biol. Bioinf. 2005 2 330 338
- (2005) IEEE/ACM Trans. Comput. Biol. Bioinf. , vol.2 , pp. 330-338
- Sevilla, J.¹ Segura, V.² Podhorski, A.³ Guruceaga, E.⁴ Mato, J.M.⁵ Martinez-Cruz, L.A.⁶ Corrales, F.J.⁷ Rubio, A.⁸

48
- 84901975336
- 10.1089/cmb.2009.0129
- S. Klie Z. Nikoloski J. Selbig J. Comput. Biol. 2010 10.1089/cmb.2009. 0129
- (2010) J. Comput. Biol.
- Klie, S.¹ Nikoloski, Z.² Selbig, J.³

49
- 66649122827
- K. Vandepoele M. Quimbaya T. Casneuf L. D. Veylder Y. V. de Peer Plant Physiol. 2009 150 535 546
- (2009) Plant Physiol. , vol.150 , pp. 535-546
- Vandepoele, K.¹ Quimbaya, M.² Casneuf, T.³ Veylder, L.D.⁴ De Peer, Y.V.⁵

50
- 1542327694
- U. Karaoz T. M. Murali S. Letovsky Y. Zheng C. Ding C. R. Cantor S. Kasif Proc. Natl. Acad. Sci. U. S. A. 2003 101 2888 2893
- (2003) Proc. Natl. Acad. Sci. U. S. A. , vol.101 , pp. 2888-2893
- Karaoz, U.¹ Murali, T.M.² Letovsky, S.³ Zheng, Y.⁴ Ding, C.⁵ Cantor, C.R.⁶ Kasif, S.⁷

51
- 37648998882
- U. Brandes D. Delling M. Gaertler R. Gorke M. Hoefer Z. Nikoloski D. Wagner IEEE Trans. Knowl. Data Eng. 2007 20 172 188
- (2007) IEEE Trans. Knowl. Data Eng. , vol.20 , pp. 172-188
- Brandes, U.¹ Delling, D.² Gaertler, M.³ Gorke, R.⁴ Hoefer, M.⁵ Nikoloski, Z.⁶ Wagner, D.⁷

52
- 0033669189
- B. Schiwikowski P. Uetz S. Fields Nat. Biotechnol. 2000 18 1257 1261
- (2000) Nat. Biotechnol. , vol.18 , pp. 1257-1261
- Schiwikowski, B.¹ Uetz, P.² Fields, S.³

53
- 0035044077
- H. Hishigaki K. Nakai T. Ono A. Tanigami Yeast 2001 18 523 531
- (2001) Yeast , vol.18 , pp. 523-531
- Hishigaki, H.¹ Nakai, K.² Ono, T.³ Tanigami, A.⁴

54
- 0036790999
- X. Zhou M. Kao W. H. Wong Proc. Natl. Acad. Sci. U. S. A. 2002 99 12783 12788
- (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 12783-12788
- Zhou, X.¹ Kao, M.² Wong, W.H.³

55
- 50949100554
- X.-M. Zhao L. Chen K. Aihara Proceedings of the OSB07 2007 68 74
- (2007) Proceedings of the OSB07 , pp. 68-74
- Zhao, X.-M.¹ Chen, L.² Aihara, K.³

56
- 18244386985
- M. Deng K. Zhang S. Mehta T. Chen F. Sun Proceedings of CSB2002 2002 197 206
- (2002) Proceedings of CSB2002 , pp. 197-206
- Deng, M.¹ Zhang, K.² Mehta, S.³ Chen, T.⁴ Sun, F.⁵

57
- 0037701046
- M. Deng T. Chen F. Sun Proc. RECOMB2003 2003 95 103
- (2003) Proc. RECOMB2003 , pp. 95-103
- Deng, M.¹ Chen, T.² Sun, F.³

58
- 1542271409
- S. Letovsky S. Kasif Bioinformatics 2003 19 i197 i204
- (2003) Bioinformatics , vol.19
- Letovsky, S.¹ Kasif, S.²

59
- 29144442904
- E. Nabieva K. Jim A. Agarwal B. Chazelle M. Singh Bioinformatics 2005 21 i302 i310
- (2005) Bioinformatics , vol.21
- Nabieva, E.¹ Jim, K.² Agarwal, A.³ Chazelle, B.⁴ Singh, M.⁵

60
- 3142745905
- Washington DC
- X. Zhu, Z. Ghahramani and J. Lafferty, Proceedings of ICML-2000, Washington DC, 2003
- (2003) Proceedings of ICML-2000
- Zhu, X.¹ Ghahramani, Z.² Lafferty, J.³

61
- 79952364419
- Z. Nikoloski S. Grimbs S. Klie J. Selbig BioSystems 2011 104 1 8
- (2011) BioSystems , vol.104 , pp. 1-8
- Nikoloski, Z.¹ Grimbs, S.² Klie, S.³ Selbig, J.⁴

62
- 15744397978
- S. Fields M. Johnston Science 2005 307 1885 1886
- (2005) Science , vol.307 , pp. 1885-1886
- Fields, S.¹ Johnston, M.²

63
- 0005540823
- ACM Press, Addison-Wesley, New York
- R. Baeza-Yates and B. Ribeiro-Neto, Modern Information Retrieval, ACM Press, Addison-Wesley, New York, 1999
- (1999) Modern Information Retrieval
- Baeza-Yates, R.¹ Ribeiro-Neto, B.²

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.