Comparative proteomic analysis of genotypic variation in germination and early seedling growth of chickpea under suboptimal soil-water conditions

Journal of Proteome Research

Volumn 11, Issue 8, 2012, Pages 4289-4307

  Vessal, Saeedreza ^a   Siddique, Kadambot H M ^a   Atkins, Craig A ^a  

^a UNIVERSITY OF WESTERN AUSTRALIA   (Australia)

Author keywords

chickpea; comparative proteomic; genotypic variation; germination; water content

Indexed keywords

CHAPERONE; MALATE DEHYDROGENASE (NADP); PHOSPHOENOLPYRUVATE CARBOXYKINASE (GTP); PROTEINASE INHIBITOR; REACTIVE OXYGEN METABOLITE; SOIL WATER;

ARTICLE; CHICKPEA; CLUSTER ANALYSIS; COMPARATIVE PROTEOMICS; CONTROLLED STUDY; GENETIC ANALYSIS; GENETIC VARIABILITY; GENOTYPE; GERMINATION; HOMEOSTASIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GROWTH; PLANT SEED; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN PROCESSING; PROTEOMICS; SIGNAL TRANSDUCTION; WATER SUPPLY;

ANALYSIS OF VARIANCE; CICER; CLUSTER ANALYSIS; DEHYDRATION; GENE EXPRESSION REGULATION, PLANT; GENETIC VARIATION; GENOTYPE; GERMINATION; PEPTIDE MAPPING; PLANT PROTEINS; PROTEOME; PROTEOMICS; SEEDLING; SOIL; STRESS, PHYSIOLOGICAL; TRANSCRIPTOME;

CICER ARIETINUM;

EID: 84864612916     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr300415w     Document Type: Article

References (58)

1. Saxena, N. P.; Johansen, C.; Saxena, M. C.; Silim, S. N., Selection for drought and salinity tolerance in cool-season food legumes. In Breeding for Tolerance in Cool Season Food Legumes; Singh, K. B., Saxena, M. C., Eds.; Wiley: Chichester, U.K., 1993; pp 245-270.
2. Finch-Savage, W. E.; Rowse, H. R.; Dent, K. C. Development of combined imbibition and hydrothermal threshold models to simulate maize (Zea mays) and chickpea (Cicer arietinum) seed germination in variable environments New Phytol. 2005, 165 (3) 825-837 (Pubitemid 40284844)
3. Hanley, M. E. Seed size and seedling growth: differential response of Australian and British Fabaceae to nutrient limitation New Phytol. 2007, 174 (2) 381
4. Weber, H.; Borisjuk, L.; Heim, U.; Buchner, P.; Wobus, U. Seed coat-associated invertases of fava bean control both unloading and storage functions: Cloning of cDNAs and cell type-specific expression Plant Cell 1995, 7 (11) 1835-1846 (Pubitemid 3019802)
5. Hosseini, N. M.; Palta, J. A.; Berger, J. D.; Siddique, K. H. M. Sowing soil water content effects on chickpea (Cicer arietinum L.): seedling emergence and early growth interaction with genotype and seed size Agric. Water Manage. 2009, 96, 1732-1736
6. Bewley, J. D. Seed germination and dormancy Plant Cell 1997, 9, 1055-1066 (Pubitemid 28181054)
7. Rajjou, L.; Gallardo, K.; Debeaujon, I.; Vandekerckhove, J.; Job, C.; Job, D. The effect of alpha-Amanitin on the Arabidopsis seed proteome highlights the distinct roles of stored and neosynthesized mRNAs during germination Plant Physiol. 2004, 134 (4) 1598-1613 (Pubitemid 38527368)
8. Varshney, R. K.; Hiremath, P. J.; Lekha, P.; Kashiwagi, J.; Balaji, J.; Deokar, A. A.; Vadez, V.; Xiao, Y.; Srinivasan, R.; Gaur, P. M. A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.) BMC Genomics 2009, 10 (1) 523
9. Bhushan, D.; Pandey, A.; Choudhary, M. K.; Datta, A.; Chakraborty, S.; Chakraborty, N. Comparative proteomics analysis of differentially expressed proteins in chickpea extracellular matrix during dehydration stress Mol. Cell Proteomics 2007, 6 (11) 1868-1884 (Pubitemid 350201865)
10. Gygi, S. P.; Rochon, Y.; Franza, B. R.; Aebersold, R. Correlation between protein and mRNA abundance in yeast Mol. Cell. Biol. 1999, 19 (3) 1720-1730 (Pubitemid 29098230)
11. Selbach, M.; Schwanhäusser, B.; Thierfelder, N.; Fang, Z.; Khanin, R.; Rajewsky, N. Widespread changes in protein synthesis induced by microRNAs Nature 2008, 455 (7209) 58-63
12. Alvarez, S.; Marsh, E. L.; Schroeder, S. G.; Schachtman, D. P. Metabolomic and proteomic changes in the xylem sap of maize under drought Plant, Cell Environ. 2008, 31 (3) 325-340 (Pubitemid 351207258)
13. Yamaguchi, M.; Valliyodan, B.; Zhang, J.; Lenoble, M. E.; Yu, O.; Rogers, E. E.; Nguyen, H. T.; Sharp, R. E. Regulation of growth response to water stress in the soybean primary root. I. Proteomic analysis reveals region-specific regulation of phenylpropanoid metabolism and control of free iron in the elongation zone Plant, Cell Environ. 2010, 33 (2) 223-243
14. Gallardo, K.; Job, C.; Groot, S.; Puype, M.; Demol, H.; Vandekerckhove, J.; Job, D. Proteomics of Arabidopsis seed germination. A comparative study of wild-type and gibberellin-deficient seeds Plant Physiol. 2002a, 129, 823-837 (Pubitemid 34689164)
15. Chibani, K.; Ali-Rachedi, S.; Job, C.; Job, D.; Jullien, M.; Grappin, P. Proteomic analysis of seed dormancy in Arabidopsis Plant Physiol. 2006, 142, 1493-1510 (Pubitemid 44956929)
16. Rajjou, L.; Belghazi, M.; Huguet, R.; Robin, C.; Moreau, A.; Job, C.; Job, D. Proteomic investigation of the effect of salicylic acid on Arabidopsis seed germination and establishment of early defense mechanisms Plant Physiol. 2006, 141 (3) 910-923 (Pubitemid 44061598)
17. Gallardo, K.; Job, C.; Groot, S. P. C.; Puype, M.; Demol, H.; Vandekerckhove, J.; Job, D. Proteomic analysis of Arabidopsis seed germination and priming Plant Physiol. 2001, 126 (2) 835-848 (Pubitemid 32566632)
18. Vessal, S.; Palta, J. A.; Atkins, A.; Siddique, K. H. M. Development of an assay to evaluate differences in germination rate among chickpea genotypes under limited water content Funct. Plant Biol. 2012, 39, 60-70
19. Goggin, D. E.; Powles, S. B.; Steadman, K. J. Selection for low or high primary dormancy in Lolium rigidum Gaud seeds results in constitutive differences in stress protein expression and peroxidase activity J. Exp. Bot. 2011, 62, 1037-1047
20. Peterson, G. L. Determination of total protein Methods Enzymol. 1983, 91, 95-115
21. Candiano, G.; Bruschi, M.; Musante, L.; Santucci, L.; Ghiggeri, G. M.; Carnemolla, B.; Orecchia, P.; Zardi, L.; Righetti, P. G. Blue silver: a very sensitive colloidal Coomassie G-250 staining for proteome analysis Electrophoresis 2004, 25 (9) 1327-1333 (Pubitemid 38801651)
22. Bringans, S.; Eriksen, S.; Kendrick, T.; Gopalakrishnakone, P.; Livk, A.; Lock, R.; Lipscombe, R. Proteomic analysis of the venom of Heterometrus longimanus (Asian black scorpion) Proteomics 2008, 8 (5) 1081-1096 (Pubitemid 351441446)
23. Sharma, N.; Hotte, N.; Rahman, M. H.; Mohammadi, M.; Deyholos, M. K.; Kav, N. N. V. Towards identifying Brassica proteins involved in mediating resistance to Leptosphaeria maculans: A proteomics-based approach Proteomics 2008, 8 (17) 3516-3535
24. Wang, X.; Fan, P.; Song, H.; Chen, X.; Li, X.; Li, Y. Comparative proteomic analysis of differentially expressed proteins in shoots of Salicornia europaea under different salinity J. Proteome Res. 2009, 8 (7) 3331-3345
25. Finch-Savage, W. E.; Leubner-Metzger, G. Seed dormancy and the control of germination New Phytol. 2006, 171 (3) 501-523 (Pubitemid 44051305)
26. Holdsworth, M. J.; Finch-Savage, W. E.; Grappin, P.; Job, D. Post-genomics dissection of seed dormancy and germination Trends Plant Sci. 2008, 13 (1) 7-13
27. Møller, I. M. Plant mitochondria and oxidative stress: electron transport, NADPH turnover, and metabolism of reactive oxygen species Ann. Rev. Plant Physiol. Plant Mol. Biol. 2003, 52 (1) 561-591 (Pubitemid 33720048)
28. Tunnacliffe, A.; Wise, M. The continuing conundrum of the LEA proteins Naturwissenschaften 2007, 94 (10) 791-812 (Pubitemid 47367664)
29. Goyal, K.; Walton, L. J.; Tunnacliffe, A. LEA proteins prevent protein aggregation due to water stress Biochem. J. 2005, 388 (Pt 1) 151-157 (Pubitemid 40732942)
30. Xiao, H.; Nassuth, A. Stress-and development-induced expression of spliced and unspliced transcripts from two highly similar dehydrin 1 genes in V. riparia and V. vinifera Plant Cell Rep. 2006, 25 (9) 968-977 (Pubitemid 44252681)
31. Wahid, A.; Close, T. J. Expression of dehydrins under heat stress and their relationship with water relations of sugarcane leaves Biol. Plant. 2007, 51 (1) 104-109 (Pubitemid 46464793)
32. Boucher, V.; Buitink, J.; Lin, X.; Boudet, J.; Hoekstra, F. A.; Hundertmark, M.; Renard, D.; Leprince, O. MtPM25 is an atypical hydrophobic late embryogenesis-abundant protein that dissociates cold and desiccation-aggregated proteins Plant, Cell Environ. 2010, 33 (3) 418-430
33. Sun, W.; Van Montagu, M.; Verbruggen, N. Small heat shock proteins and stress tolerance in plants Biochim. Biophys. Acta, Gene Struct. Expression 2002, 1577 (1) 1-9 and references therein (Pubitemid 34876598)
34. Basha, E.; Lee, G. J.; Breci, L. A.; Hausrath, A. C.; Buan, N. R.; Giese, K. C.; Vierling, E. The identity of proteins associated with a small heat shock protein during heat stress in vivo indicates that these chaperones protect a wide range of cellular functions J. Biol. Chem. 2004, 279 (9) 7566-7575 (Pubitemid 38294635)
35. Sharma, S. K.; Christen, P.; Goloubinoff, P. Disaggregating chaperones: an unfolding story Curr. Protein Peptide Sci. 2009, 10 (5) 432-446
36. Hu, P.; Meng, Y.; Wise, R. P. Functional contribution of chorismate synthase, anthranilate synthase, and chorismate mutase to penetration resistance in barley-powdery mildew interactions Mol. Plant-Microbe Interact. 2009, 22 (3) 311-320
37. Schmitt, H. D.; Jahn, R. A tethering complex recruits SNAREs and grabs vesicles Cell 2009, 139 (6) 1053-1055
38. Walker, R. P.; Trevanion, S. J.; Leegood, R. C. Phosphoenolpyruvate carboxykinase from higher plants: purification from cucumber and evidence of rapid proteolytic cleavage in extracts from a range of plant tissues Planta 1995, 196 (1) 58-63
39. Penfield, S.; Rylott, E. L.; Gilday, A. D.; Graham, S.; Larson, T. R.; Graham, I. A. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires phosphoenolpyruvate carboxykinase 1 Plant Cell 2004, 16 (10) 2705-2718 (Pubitemid 41071357)
40. Van der Merwe, M. J.; Osorio, S.; Moritz, T.; Nunes-Nesi, A.; Fernie, A. R. Decreased mitochondrial activities of malate dehydrogenase and fumarase in tomato lead to altered root growth and architecture via diverse mechanisms Plant Physiol. 2009, 149 (2) 653-669
41. Oracz, K.; El-Maarouf-Bouteau, H.; Kranner, I.; Bogatek, R.; Corbineau, F.; Bailly, C. The mechanisms involved in seed dormancy alleviation by hydrogen cyanide unravel the role of reactive oxygen species as key factors of cellular signaling during germination Plant Physiol. 2009, 150 (1) 494-505
42. El-Maarouf-Bouteau, H.; Bailly, C. Oxidative signalling in seed germination and dormancy Plant Signaling Behav. 2008, 3 (3) 175-182 (Pubitemid 351570367)
43. Bailly, C.; El-Maarouf-Bouteau, H.; Corbineau, F. From intracellular signaling networks to cell death: the dual role of reactive oxygen species in seed physiology C. R. Biol. 2008, 331 (10) 806-814
44. Prashanth, S. R.; Sadhasivam, V.; Parida, A. Over expression of cytosolic copper/zinc superoxide dismutase from a mangrove plant Avicennia marina in indica rice var Pusa Basmati-1 confers abiotic stress tolerance Transgenic Res. 2008, 17 (2) 281-291 (Pubitemid 351421972)
45. Ramos, J.; Matamoros, M. A.; Naya, L.; James, E. K.; Rouhier, N.; Sato, S.; Tabata, S.; Becana, M. The glutathione peroxidase gene family of Lotus japonicus: characterization of genomic clones, expression analyses and immunolocalization in legumes New Phytol. 2009, 181 (1) 103-114
46. Tripathi, B. N.; Bhatt, I.; Dietz, K. J. Peroxiredoxins: a less studied component of hydrogen peroxide detoxification in photosynthetic organisms Protoplasma 2009, 235 (1) 3-15
47. Dietz, K. J. Plant peroxiredoxins Ann. Rev. Plant Biol. 2003, 54 (1) 93-107
48. Haslekas, C.; Viken, M. K.; Grini, P. E.; Nygaard, V.; Nordgard, S. H. Seed 1-cysteine peroxiredoxin antioxidants are not involved in dormancy, but contribute to inhibition of germination during stress Plant Physiol. 2003, 133, 1148-1157 (Pubitemid 37458013)
49. 2 production in leaves of maize (Zea mays) plants New Phytol. 2007, 173 (1) 27-38 (Pubitemid 44924238)
50. Michalak, M.; Corbett, E. F.; Mesaeli, N.; Nakamura, K.; Opas, M. Calreticulin: one protein, one gene, many functions Biochem. J. 1999, 344 (Pt 2) 281-292 (Pubitemid 30011581)
51. Jia, X. Y.; Xu, C. Y.; Jing, R. L.; Li, R. Z.; Mao, X. G.; Wang, J. P.; Chang, X. P. Molecular cloning and characterization of wheat calreticulin (CRT) gene involved in drought-stressed responses J. Exp. Bot. 2008, 59 (4) 739-751
52. Srivastava, S.; Fristensky, B.; Kav, N. N. V. Constitutive expression of a PR10 protein enhances the germination of Brassica napus under saline conditions Plant Cell Physiol. 2004, 45 (9) 1320-1324 (Pubitemid 39464868)
53. Hernández-Nistal, J.; Martín, I.; Jiménez, T.; Dopico, B.; Labrador, E. Two cell wall Kunitz trypsin inhibitors in chickpea during seed germination and seedling growth Plant Physiol. Biochem. 2009, 47 (3) 181-187
54. Yelina, N. E.; Smith, L. M.; Jones, A. M. E.; Patel, K.; Kelly, K. A.; Baulcombe, D. C. Putative Arabidopsis THO/TREX mRNA export complex is involved in transgene and endogenous siRNA biosynthesis Proc. Natl. Acad. Sci. U.S.A. 2010, 107 (31) 13948-13953
55. Chávez, S.; Aguilera, A. The yeast HPR1 gene has a functional role in transcriptional elongation that uncovers a novel source of genome instability Genes Dev. 1997, 11 (24) 3459-3470 (Pubitemid 28023967)
56. Dunwell, J. M.; Purvis, A.; Khuri, S. Cupins: the most functionally diverse protein superfamily? Phytochemistry 2004, 65 (1) 7-17 and references therein (Pubitemid 38155888)
57. Seifert, G. J. Nucleotide sugar interconversions and cell wall biosynthesis: how to bring the inside to the outside Curr. Opin. Plant Biol. 2004, 7 (3) 277-284 (Pubitemid 38611048)
58. Bønsager, B. C.; Finnie, C.; Roepstorff, P.; Svensson, B. Spatio-temporal changes in germination and radical elongation of barley seeds tracked by proteome analysis of dissected embryo, aleurone layer, and endosperm tissues Proteomics 2007, 7 (24) 4528-4540