Interspecific interactions in mixed microbial cultures in a biodegradation perspective

Applied Microbiology and Biotechnology

Volumn 95, Issue 4, 2012, Pages 861-870

  Mikeskova H ^a,b   Novotny C ^a   Svobodova K ^a  

^a INSTITUTE OF MICROBIOLOGY   (Czech Republic)

^b INSTITUTE OF CHEMICAL TECHNOLOGY   (Czech Republic)

Author keywords

Biodegradation; Consortium development; Interspecific interactions; Microbial consortia; PCR based techniques

Indexed keywords

CO-CULTURES; CONSORTIUM DEVELOPMENT; CONSORTIUM MEMBERS; DENATURING GRADIENT GEL ELECTROPHORESES (DGGE); INTERSPECIFIC INTERACTIONS; MICROBIAL COMMUNITIES; MICROBIAL CONSORTIA; MICROBIAL POPULATIONS; MICROBIAL STRAIN; MIXED MICROBIAL CULTURE; MOLECULAR GENETICS; PCR-BASED TECHNIQUES; PROTEOMIC TECHNIQUES; SYNTHETIC DYES;

ELECTROPHORESIS; MICROBIOLOGY; OCEAN HABITATS; OPTIMIZATION; POLYCHLORINATED BIPHENYLS; POLYCYCLIC AROMATIC HYDROCARBONS; RNA;

BIODEGRADATION;

AZO DYE; METHYL ORANGE; PERCHLORATE; PETROLEUM; RIBOSOME RNA; SULFAMETHOXAZOLE;

BACTERIUM; BIODEGRADATION; DYE; ENZYME ACTIVITY; FUNGUS; INTERSPECIFIC INTERACTION; MICROBIAL COMMUNITY; OPTIMIZATION; ORGANIC POLLUTANT; PAH; PCB; POLYMERASE CHAIN REACTION; POPULATION DYNAMICS; PROTEOMICS;

ACHROMOBACTER; ACHROMOBACTER XYLOSOXIDANS; ASPERGILLUS OCHRACEUS; BACILLUS CEREUS; BACTERIUM CULTURE; BIOCHEMICAL COMPOSITION; BIODEGRADATION; BIOREMEDIATION; CHEMICAL INTERACTION; COCULTURE; DENATURING GRADIENT GEL ELECTROPHORESIS; FLAVOBACTERIUM; FUNGUS CULTURE; FUSARIUM OXYSPORUM; MICROBIAL COMMUNITY; MICROBIAL CONSORTIUM; MICROBIAL POPULATION DYNAMICS; MOLECULAR GENETICS; NONHUMAN; PENICILLIUM JANTHINELLUM; PROTEOMICS; PSEUDOMONAS AERUGINOSA; PSEUDOMONAS FLUORESCENS; PSEUDOMONAS PUTIDA; REVIEW; RHODOCOCCUS ERYTHROPOLIS; RNA SEQUENCE; SOIL POLLUTION; SPHINGOMONAS PAUCIMOBILIS; STENOTROPHOMONAS; STENOTROPHOMONAS MALTOPHILIA; TRAMETES VERSICOLOR;

BACTERIA; BIODEGRADATION, ENVIRONMENTAL; FUNGI; SPECIES SPECIFICITY;

FUNGI;

EID: 84864587851     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-012-4234-6     Document Type: Review

References (88)

1. Alkhatib MF, Alam MZ, Muyibi SA, Husain IAF (2011) An isolated bacterial consortium for crude oil biodegradation. Afr J Biotechnol 10(81):18763-118767
2. Andersson BE, Welinder L, Olsson PA, Olsson S, Henzysson T (2000) Growth of inoculated white-rot fungi and their interactions with the bacterial community in soil contaminated with polycyclic aromatic hydrocarbons, as measured by phospholipid fatty acids. Bioresour Technol 73:29-36
3. Arun A, Eyini M (2011) Comparative studies on lignin and polycyclic aromatic hydrocarbons degradation by basidiomycetes fungi. Bioresour Technol 102:8063-8070
4. Asgher H, Bhatti NH, Shah SAH, Asad MJ, Legge RI (2007) Decolorization potential of mixed microbial consortia for reactive and disperse textile dye-stuff. Biodegradation 18:311-316
5. Asgher M, Bhatti HN, Ashraf M, Legge RL (2008) Recent developments in biodegradation of industrial pollutants by white rot fungi and their enzymes. Biodegradation 19:771-783
6. Ayed L, Harbi B, Cheref A, Bakhrouf A, Achour S (2010a) Application of the mixture design to optimise the formulation of active consortia to decolorize azo-dye methyl red. Water Sci Technol 62 (12):2837-2845
7. Ayed L, Khelifi E, Jannet HB, Miladi H, Cheref A, Achour S, Bakhrouf A (2010b) Response surface methodology for decolorization of azo dye Methyl Orange by bacterial consortium: Produced enzymes and metabolites characterization. Chem Eng J 165:200-208
8. Ayed L, Achour S, Bakhrouf A (2011) Application of the mixture design to decolourise effluent textile wastewater using continuous stirred bed reactor. Water SA 37:21-26
9. Bacosa H, Suto K, Inoue C (2010) Preferential degradation of aromatic hydrocarbons in kerosene by a microbial consortium. Int Biodeter Biodegr 64(8):702-710
10. Baldrian P (2004) Increase of laccase activity during interspecific interactions of white-rot fungi. Microb Ecol 50:245-253
11. Baldwin BR, Nakatsu CH, Nies L (2003) Detection and enumeration of aromatic oxygenase genes by multiplex and real-Time PCR. Appl Environ Microbiol 69(6):3350-3358
12. Bansal R, Crawford RL, Paszczynski AJ (2011) Peptide biomarkers as evidence of perchlorate biodegradation. Appl Environ Microbiol 77(3):810-820
13. Barsing P, Tiwari A, Joshi T, Garg S (2011) Application of novel bacterial consortium for mineralization of sulphonated aromatic amines. Bioresour Technol 102(2):765-771
14. Boonchan S, Britz ML, Stanley GA (2000) Degradation and mineralization of high-molecular-weight polycyclic aromatic hydrocarbons by defined fungal-bacterial cocultures. Appl Environ Microbiol 66(3):1007-1019
15. Borras E, Caminal G, Sarra M, Novotný C (2010) Effect of soil bacteria on the ability of polycyclic aromatic hydrocarbons (PAHs) removal by Trametes versicolor and Irpex lacteus from contaminated soil. Soil Biol Biochem 42:2087-2093
16. Cajthaml T, Erbanová P, Šašek V, Moeder M (2006) Breakdown products on metabolic pathway of degradation of benz(a)anthracene by a ligninolytic fungus. Chemosphere 64:560-564
17. Conneely A, Smyth WF, McMullan G (2002) Study of the white-rot fungal degradation of selected phthalocyanine dyes by capillary electrophoresis and liquid chromatography. Anal Chim Acta 451:259-270
18. Cupples AM (2011) The use of nucleic acid based stable isotope probing to identify the microorganisms responsible for anaerobic benzene and toluene biodegradation. J MicrobiolMeth 85(2):83-91
19. Cyplik P, Schmidt M, Szulc A, Marecik R, Lisiecki P, Heipieper HJ, Owsianiak M, Vainshtein M, Chrzanowski L (2011) Relative quantitative PCR to assess bacterial community dynamics during biodegradation of diesel and biodiesel fuels under various aeration conditions. Bioresour Technol 102(6):4347-4352
20. Demanou J, Sharma S, Dorfler U, Schroll R, Pritsch K, Njine T, Bausenwein U, Monkiedje A, Munch JC, Schloter M (2006) Structural and functional diversity of soil microbial communities as a result of combined applications of copper and mefenoxam. Soil Biol Biochem 38:2381-2389
21. Fazzini RAB, Preto MJ, Quintas ACP, Bielecka A, Timmis KN, Martins dos Santos VAP (2010) Consortia modulation of the stress response: Proteomic analysis of single strain versus mixed culture. Environ Microbiol 12(9):2436-2449
22. Fernández-Sánchez JM, Rodríguez-Vázquez R, Ruiz-Aguilar G, Alvarez PJJ (2001) PCB biodegradation in aged contaminated soil: Interactions between exogenous Phanerochaete chrysosporium and indigenous microorganisms. J Environ Sci Health A 36 (7):1145-1162
23. Gao D, Zeng Y, Wen X, Qian Y (2008) Competition strategies for the incubation of white rot fungi under non-sterile conditions. Process Biochem 43:937-944
24. Ghanem KM, Al-Garni SM, Biag AK (2011) Statistical optimization of cultural conditions for decolorization of methylene blue by mono and mixed bacterial culture techniques. Afr Microbiol Res 5 (15):2187-2197
25. Ghazali FM, Rahman RNZA, Salleh AB, Basri M (2004) Biodegradation of hydrocarbons in soil by microbial consortium. Int Biodeter Biodegr 54(1):61-67
26. Goijgic-Cvijovic GD, Milic JS, Solevic TM, Beskoski VP, Ilic MV, Djokic LS, Narancic TM, Vrvic MM (2012) Biodegradation of petroleum sludge and petroleum polluted soil by a bacterial consortium: A laboratory study. Biodegradation 23(1):1-14
27. González N, Simarro R, Molina MC, Bautista LF, Delgado L, Villa JA (2011) Effect of surfactants on PAH biodegradtion by a bacterial consortium and on the dynamics of the bacterial community during the process. Bioresour Technol 102:9438-9446
28. Gou M, Qu Y, Zhou J, Ma F, Liang T (2009) Azo dye decolorization by a new fungal isolate, Penicillium sp. QQ and fungal-bacterial cocultures. J Haz Mat 170:314-319
29. Hamitouche A, Amrane A, Bendjama Z, Kaouah F (2011) Phenol biodegardation by mixed culture in batch reactor-optimization of the mineral medium composition. Desal Water Treat 25(1-3):20-24
30. Hasan SA, Ferreira MIM, Koetsier MJ, Arif MI, Janssen DB (2011) Complete biodegradation of 4- fluorocinnamic acid by a consortium comprising Arthrobacter sp. strain G1 and Ralstonia sp. strain H1. Appl Environ Microbiol 77(2):572-579
31. Heinflihg-Weidtmann A, Reemtsma T, Storm T, Szewczyk U (2001) Sulfophthalimide as major metabolite formed from sulfonated phthalocyaninne dyes by the white-rot fungus Bjerkandera adusta. FEMS Microbiol Lett 203:179-183
32. Hibbing ME, Fugua C, Parsek MR, Peterson SB (2010) Bacterial competition: Surviving and thriving in the microbial jungle. Nature Rev 8:15-25
33. Himmelheber DW, Pennell KD, Hughes JB (2011) Evaluation of a laboratory-scale bioreactive in situ sediment cap for the treatment of organic contaminants. Water Res 45(17):5365-5374
34. Hiscox J, Baldrian P, Rogers HJ, Boddy L (2010) Changes in oxidative enzyme activity during interspecific mycelial interactions involving the white-rot fungus Trametes versicolor. Fung Gen Biol 47:562-571
35. Ho KL, Chen YY, Lee DJ (2010) Functional consortia for creosoldegrading activated sludges: Toxicity-To-extinction approach. Bioresour Technol 101(23):9000-9005
36. Hudcova T, Halecky M, Kozliak E, Stiborova M, Paca J (2011) Aerobic degradation of 2,4-dinitrotoluene by individual bacterial strains and defined mixed population in submerged cultures. J Haz Mat 192:605-613
37. Jadhav JP, Kalyani DC, Telke AA, Phugare SS, Govindwar SP (2010) Evaluation of the efficacy of a bacterial consortium for the removal of color, reduction of heavy metals, and toxicity from textile dye effluent. Bioresour Technol 101:165-173
38. Janbandhu A, Fulekar MH (2011) Biodegradation of phenanthrene using adapted microbial consortium isolated from petrochemical contaminated environment. J Haz Mat 187(1-3):333-340
39. Jehmlich N, Kleinsteuber S, Vogt C, Benndorf D, Harms H, Schmidt F, von Bergen M, Seifert J (2010) Phylogenetic and proteomic analysis of an anaerobic toluene-degrading community. J Appl Microbiol 109(6):1937-1945
40. Jin DF, Hu H, Liu DF, Ding HT, Jia XM, Zhao YH (2012) Optimization of a bacterial consortium for nitrobenzene degradation. Water Sci Technol 65(5):795-801
41. Kadam AA, Telke AA, Jagtap AS, Govindwar SP (2011) Decolorization of adsorbed textile dyes by developed consortium of Pseudomonas sp SUK1 and Aspergillus ochraceus NCIM-1146 under solid state fermentation. J Haz Mat 189(1-2):486-494
42. Kanaly RA, Harayama S (2010) Advances in the field of highmolecular weight polycyclic aromatic hydrocarbon biodegradation by bacteria. Microb Biotechnol 3(2):136-164
43. Kausar H, Sariah M, Saud HM, Alam MZ, Ismail MR (2010) Development of compatible lignocellulolytic fungal consortium for rapid composting of rice straw. Int Biodeter Biodegr 64:594-600
44. Khehra MS, Saini HS, Sharma DK, Chadha BS, Chimni SS (2005) Decolorization of various azo dyes by bacterial consortium. Dyes Pigments 67:55-61
45. Kucharzyk KH, Crawford RL, Paszczynski AJ, Soule T, Hess TH (2012) Maximizing microbial degradation of perchlorate using a genetic algorithm: Media optimization. J Biotechnol 157(1):189-197
46. Lang E, Kleeberg I, Zadrazil F (1997) Competition of Pleurotus sp. and Dichomitus squalens with soil microorganisms during lignocellulose decomposition. Bioresour Technol 60:95-99
47. Larcher S, Yargeau V (2011) Biodegradation of sulfamethoxazole by individual and mixed bacteria. Appl Microbiol Biotechnol 91:211-218
48. Lawniczak L, Kaczorek E, Olszanowski A (2011) The influence of cell immobilization by biofilm forming on the biodegradation capabilities of bacterial consortia. World J Microbiol Biotechnol 27 (5):1183-1188
49. Li YY, Li B (2011) Study on fungi-bacteria consortium bioremediation of petroleum contaminated mangrove sedimets amended with mixed biosurfactants. In: Shi YG, Zuo JL (eds) Environmental biotechnology and materials engineering. Trans Tech, Zurich, pp 1163-1167. doi:10.4028/www.scientific.net/AMR.183-185. 1163
50. Libra JA, Borchert M, Vigelahn L, Storm T (2004) Two stage biological treatment of a diazo reactive textile dye and the fate of the dye and the fate of the dye metabolites. Chemosphere 56(2):167-180
51. Liu HJ, Yang CY, Tian Y, Lin GH, Zheng TL (2011) Using population dynamics by DGGE to design the bacterial consortium isolated from mangrove sediments for biodegradation of PAHs. Int Biodeter Biodegr 65(2):269-275
52. Lors C, Ryngaert A, Perie F, Diels L, Damidot D (2010) Evolution of bacterial community during bioremediation of PAHs in a coal tar contaminated soil. Chemosphere 81(10):1263-1271
53. Machín-Ramírez C, Morales D, Martínez-Morales F, Okoh AI, Trejo- Hernández MR (2010) Benzo(a)pyrene removal by axenic- and co-cultures of some bacterial and fungal strains. Int Biodeter Biodegr 64:538-544
54. Mahmood S, Paton GI, Prosser JI (2005) Cultivation-independent in situ molecular analysis of bacteria involved in degradation of pentachlorophenol in soil. Environ Microbiol 7(9):1349-1360
55. Malachová K, Pavlícková Z, Novotný C, Svobodová K, Lednická D, Musílková E (2006) Reduction in the mutagenity of synthetic dyes by successive treatment with activated sludge and the ligninolytic fungus, Irpex lacteus. Environ Mol Mutag 47(7):533-540
56. McMullan G, Meehan C, Conneely A, Kirby N, Robinson T, Nigam P, Banat IM, Marchant R, Smyth WF (2001) Microbial decolourisation and degradation of textile dyes. Appl Microbiol Biotechnol 56:81-87
57. Moretti M, Grunau A, Minerdi D, Gehring P, Roschitzki B, Eberl L, Garibaldi A, Gullino ML, Riedel K (2010) A proteomics approach to study synergistic and antagonistic interactions of the fungal-bacterial consortium Fusarium oxysporum wild-Type MSA 35. Proteomics 10:3292-3320
58. Mukherjee AK, Bordoloi NK (2011) Bioremediation and reclamation of soil contaminated with petroleum oil hydrocarbons by exogenously seeded bacterial consortium: A pilot-scale study. Environ Sci Pollut Res 18(3):471-478
59. Nascimento C, Magalhaes DP, Brandao M, Santos AB, Chame M, Baptista D, Nishikawa M, da Silva M (2011) Degradation and detoxification of three textile azo dyes by mixed fungal cultures from semi-Arid region of brazilian norteast. Braz Arch Biol Technol 54(3):621-628
60. Novotný C, Cajthaml T, Svobodová K, Šušla M, Šašek V (2009) Irpex lacteus, a white-rot fungus with biotechnological potential-review. Folia Microbiol 54(5):375-390
61. Novotný C, Svobodová K, Benada O, Kofronová O, Heissenberger A, Fuchs W (2011) Potential of combined fungal and bacterial treatment for color removal in textile wastewater. Bioresour Technol 102:879-888
62. Osma JF, Toca-Herrera JL, Rodriguez-Couto S (2010) Transformation pathway of Remazol Brilliant Blue R by imobilised laccase. Bioresour Technol 101(22):8509-8514
63. Patel V, Jain S, Madamwar D (2012) Naphtalene degradation by bacterial consortium (DV-AL) developed from Alang-Sosiya ship breaking yard, Gujarat, India. Bioresour Technol 107: 122-130
64. Phugare SS, Kalyani DC, Patil AV, Jadhav JP (2011a) Textile dye degradation by bacterial consortium and subsequent toxicological analysis of dye and dye metabolites using cytotoxicity, genotoxicity and oxidative stress studies. J Haz Mat 186(1):713-723
65. Phugare SS, Kalyani DC, Surwase SN, Jadhav JP (2011b) Ecofriendly degradation, decolorization and detoxification of textile effluent by a developed bacterial consortium. Ecotoxicol Environ Saf 74:1288-1296
66. Pieper DH, Seeger M (2008) Bacterial metabolism of polychlorinated biphenyls. J Mol Microbiol Biotechnol 15:121-138
67. Pino M, Penuela G (2011) Simultaneous degradation of the pesticides methyl parathion and chlorpyrifos by an isolated bacterial consortium from a contaminated site. Int Biodeter Biodegr 65 (6):827-831
68. Pino NJ, Dominiquez MC, Penuela GA (2011) Isolation of a selected microbial consortium capable of degrading methyl parathion and p-nitrophenol from a contaminated soil site. J Environ Sci Health B- Pesticides Food Contaminants and Agricultural Wastes 46 (2):173-180
69. Rabinovich ML, Bolobova AV, Vasil'chenko LG (2004) Fungal decomposition of natural aromatic structures and xenobiotics: A review. Appl Biochem Microbiol 40(1):1-17
70. Radtke C, Cook WS, Anderson A (1994) Factors affecting antagonism of the growth of Phanerochaete chrysosporium by bacteria isolated from soils. Appl Microbiol Biotechnol 41: 274-280
71. Reemtsma T, Jakobs J (2001) Concerted chemical and microbial degradation of sulfophthalimides formed from sulfophthalocyanine dyes by white-rot fungi. Environ Sci Technol 35:4655-4659
72. Sasikala C, Jiwal S, Rout P, Ramya M (2012) Biodegradation of chlorpyrifos by bacterial consortium isolated from agriculture soil. World J Microbiol Biotechnol 28(3):1301-1308
73. Senan RC, Abraham TE (2004) Bioremediation of textile azo dyes by aerobic bacterial consortium. Biodegradation 15:275-280
74. Seneviratne G, Zavahir JS, Bandara WMMS, Weerasekara MLMAW (2008) Fungal-bacterial biofilms: Their development for novel biotechnological applications. World J Microbiol Biotechnol 24:739-743
75. Simarro R, González N, Bautista LF, Sanz R, Molina MC (2011) Optimisation of key abiotic factors of PAH (naphthalene, phenanthrene and anthracene) biodegradation process by a bacterial consortium. Water Air Soil Pollut 217:365-374
76. Stolz A (2001) Basic and applied aspects in the microbial degradation of azo dyes. Appl Microbiol Biotechnol 56:69-80
77. Sul WJ, Park J, Quensen JF III, Rodrigues JLM, Seliger L, Tsoi TV, Zylstra GJ, Tiedje JM (2009) DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl contaminated river sediment. Appl Environ Microbiol 75(17):5501-5506
78. Supaka N, Juntongjin K, Damronglerd S, Delia ML, Strehaiano P (2004) Microbial decolorization of reactive azo dyes in a sequential anaerobic-Aerobic system. Chem Eng J 99(2):169-176
79. Svobodová K, Senholdt M, Novotný C, Rehorek A (2007) Mechanism of Reactive Orange 16 degradation with the white rot fungus Irpex lacteus. Process Biochem 42:1279-1284
80. Takagi K, Kataoka R, Yamazaki K (2011) Recent technology on bioremediation of POPs and persistent pesticides. JARQ-Jap Agr Res Q 45(2):129-136
81. Trzesicka-Mlynarz D, Ward OP (1995) Degradation of polycyclic aromatic hydrocarbons (PAHs) by a mixed culture and its component pure cultures, obtained from PAH-contaminated soil. Can J Microbiol 41:470-476
82. Uhlik O, Jecna K, Mackova M, Vlcek C, Hroudova M, Demnerova K, Paces V, Macek T (2009) Biphenyl-metabolizing bacteria in the rhizosphere of horseradish and bulk soil contaminated by stable isotope probing. Appl Environ Microbiol 75(20):6471-6477
83. van Elsas JD, Boersma FGH (2011) A review of molecular methods to study the microbiota of soil and the mycosphere. Eur J Soil Biol 47:77-87
84. WangW, Yan L, Cui Z, Gao Y,Wang Y, Jing R (2011) Characterization of a microbial consortium capable of degrading lignocellulose. Bioresour Technol 102:9321-9324
85. Wesenberg D, Kyriakides I, Agathos SN (2003) White-rot fungi and their enzymes for the treatment of industrial dye effluents. Biotechnol Adv 22:161-187
86. Wouters K, Meas E, Spitz JA, Roeffaers MBJ, Wattiau P, Hofkens J, Springael D (2010) A non-invasive fluorescent staining procedure allows confocal laser scanning microscopy based imaging of Mycobacterium in multispecies biofilms colonizing and degrading polycyclic aromatic hydrocarbons. J Microbiol Meth 83 (3):317-325
87. Xavier JB (2011) Social interactions in synthetic and natural microbial communities. Mol Syst Biol 7:483
88. Zahed MA, Aziz HA, Isa MH, Mohajeri L (2012) Response surface analysis to improve dispersed crude oil biodegradation. Clean soil air water 40(3):262-267