-
1
-
-
0037423543
-
Biological identifications through DNA barcodes
-
Hebert PDN, Cywinska A, Ball SL, de Waard JR, ((2003)) Biological identifications through DNA barcodes. Proc R Soc B 270:: 313--321.
-
(2003)
Proc R Soc B
, vol.270
, pp. 313-321
-
-
Hebert, P.D.N.1
Cywinska, A.2
Ball, S.L.3
de Waard, J.R.4
-
2
-
-
0042531561
-
Barcoding animal life: cytochrome c oxidase subunit I divergences among closely related species
-
Hebert PDN, Ratnasingham S, de Waard JR, ((2003)) Barcoding animal life: cytochrome c oxidase subunit I divergences among closely related species. Proc R Soc B 270 (S1): 96--99.
-
(2003)
Proc R Soc B
, vol.270
, Issue.S1
, pp. 96-99
-
-
Hebert, P.D.N.1
Ratnasingham, S.2
de Waard, J.R.3
-
3
-
-
6944255373
-
Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator
-
Hebert PDN, Penton EH, Burns JM, Janzen DH, Hallwachs W, ((2004)) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proc Natl Acad Sci USA 101:: 14812--14817.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 14812-14817
-
-
Hebert, P.D.N.1
Penton, E.H.2
Burns, J.M.3
Janzen, D.H.4
Hallwachs, W.5
-
4
-
-
8844220527
-
Identification of birds through DNA barcodes
-
Hebert PDN, Stoeckle MT, Zemlak TS, Francis CM, ((2004)) Identification of birds through DNA barcodes. PLoS Biol 2:: 1657--1663.
-
(2004)
PLoS Biol
, vol.2
, pp. 1657-1663
-
-
Hebert, P.D.N.1
Stoeckle, M.T.2
Zemlak, T.S.3
Francis, C.M.4
-
5
-
-
32244439604
-
DNA barcoding Australia's fish species
-
Ward RD, Zemlak TS, Innes BH, Last PR, Hebert PDN, ((2005)) DNA barcoding Australia's fish species. Phil Trans R Soc B 360:: 1847--1857.
-
(2005)
Phil Trans R Soc B
, vol.360
, pp. 1847-1857
-
-
Ward, R.D.1
Zemlak, T.S.2
Innes, B.H.3
Last, P.R.4
Hebert, P.D.N.5
-
6
-
-
34447127560
-
Comprehensive DNA barcode coverage of North American birds
-
Kerr KCR, Stoeckle MY, Dove CJ, Weigt LA, Francis CM, et al. ((2007)) Comprehensive DNA barcode coverage of North American birds. Mol Ecol Notes 7:: 535--543.
-
(2007)
Mol Ecol Notes
, vol.7
, pp. 535-543
-
-
Kerr, K.C.R.1
Stoeckle, M.Y.2
Dove, C.J.3
Weigt, L.A.4
Francis, C.M.5
-
7
-
-
38949205862
-
CO1 DNA barcoding amphibians: take the chance, meet the challenge
-
Smith MA, Poyarkov NA Jr, Hebert PDN, ((2008)) CO1 DNA barcoding amphibians: take the chance, meet the challenge. Mol Ecol Resour 8:: 235--246.
-
(2008)
Mol Ecol Resour
, vol.8
, pp. 235-246
-
-
Smith, M.A.1
Poyarkov Jr., N.A.2
Hebert, P.D.N.3
-
8
-
-
65349124174
-
Are plant species inherently harder to discriminate than animal species using DNA barcoding markers?
-
Fazekas AJ, Kesanakurti PR, Burgess KS, Percy DM, Graham SW, et al. ((2009)) Are plant species inherently harder to discriminate than animal species using DNA barcoding markers? Mol Ecol Resour 9 (S1): 130--139.
-
(2009)
Mol Ecol Resour
, vol.9
, Issue.S1
, pp. 130-139
-
-
Fazekas, A.J.1
Kesanakurti, P.R.2
Burgess, K.S.3
Percy, D.M.4
Graham, S.W.5
-
9
-
-
84872830342
-
-
Kress WJ, Erickson DL, Manos P, Ge XJ, Hao G,et al. (2009) Proposal to the consortium for the barcode of life for the adoption of a three-locus DNA barcode for land plants. Available: http://www.barcoding.si.edu/plant_working_group.html.
-
(2009)
Proposal to the consortium for the barcode of life for the adoption of a three-locus DNA barcode for land plants
-
-
Kress, W.J.1
Erickson, D.L.2
Manos, P.3
Ge, X.J.4
Hao, G.5
-
10
-
-
69149084832
-
A DNA barcode for land plants
-
CBOL Plant Working Group
-
CBOL Plant Working Group ((2009)) A DNA barcode for land plants. Proc Natl Acad Sci USA 106:: 12794--12797.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 12794-12797
-
-
-
12
-
-
70749129778
-
Rapid DNA barcoding analysis of large datasets using the composition vector method
-
Chu KH, Xu M, Li CP, ((2009)) Rapid DNA barcoding analysis of large datasets using the composition vector method. BMC Bioinformatics 10 (S14): S8.
-
(2009)
BMC Bioinformatics
, vol.10
, Issue.S14
-
-
Chu, K.H.1
Xu, M.2
Li, C.P.3
-
13
-
-
34248149943
-
BOLD: the barcode of life data system (www.barcodinglife.org)
-
Ratnasingham S, Hebert PDN, ((2007)) BOLD: the barcode of life data system (www.barcodinglife.org). Mol Ecol Notes 7:: 355--364.
-
(2007)
Mol Ecol Notes
, vol.7
, pp. 355-364
-
-
Ratnasingham, S.1
Hebert, P.D.N.2
-
14
-
-
42649090839
-
DNA barcoding in the cycadales: testing the potential of proposed barcoding markers for species identification of cycads
-
Sass C, Little DP, Stevenson DW, Specht CD, ((2007)) DNA barcoding in the cycadales: testing the potential of proposed barcoding markers for species identification of cycads. PLoS One 2:: e1154.
-
(2007)
PLoS One
, vol.2
-
-
Sass, C.1
Little, D.P.2
Stevenson, D.W.3
Specht, C.D.4
-
15
-
-
0036144960
-
Stretch coding and block coding: two new strategies to represent questionably aligned DNA sequences
-
Geiger DL, ((2002)) Stretch coding and block coding: two new strategies to represent questionably aligned DNA sequences. J Mol Evol 54:: 191--199.
-
(2002)
J Mol Evol
, vol.54
, pp. 191-199
-
-
Geiger, D.L.1
-
16
-
-
0001857390
-
Optimization alignment: the end of multiple sequence alignment in phylogenetics
-
Wheeler W, ((1996)) Optimization alignment: the end of multiple sequence alignment in phylogenetics. Cladistics 12:: 1--9.
-
(1996)
Cladistics
, vol.12
, pp. 1-9
-
-
Wheeler, W.1
-
17
-
-
33747888802
-
Ribosomal RNA as molecular barcodes: A simple correlation analysis without sequence alignment
-
Chu KH, Li CP, Qi J, ((2006)) Ribosomal RNA as molecular barcodes: A simple correlation analysis without sequence alignment. Bioinformatics 22:: 1690--1701.
-
(2006)
Bioinformatics
, vol.22
, pp. 1690-1701
-
-
Chu, K.H.1
Li, C.P.2
Qi, J.3
-
18
-
-
80051683629
-
DNA barcode sequence identification incorporating taxonomic hierarchy and within taxon variability
-
Little DP, ((2011)) DNA barcode sequence identification incorporating taxonomic hierarchy and within taxon variability. PLoS One 6:: e20552.
-
(2011)
PLoS One
, vol.6
-
-
Little, D.P.1
-
19
-
-
1242335920
-
Whole proteome prokaryote phylogeny without sequence alignment: a K-string composition approach
-
Qi J, Wang B, Hao BL, ((2004)) Whole proteome prokaryote phylogeny without sequence alignment: a K-string composition approach. J Mol Evol 58:: 1--11.
-
(2004)
J Mol Evol
, vol.58
, pp. 1-11
-
-
Qi, J.1
Wang, B.2
Hao, B.L.3
-
20
-
-
3242890106
-
CVTree: a phylogenetic tree reconstruction tool based on whole genomes
-
Qi J, Luo H, Hao B, ((2004)) CVTree: a phylogenetic tree reconstruction tool based on whole genomes. Nucl Acids Res 32:: W1--W3.
-
(2004)
Nucl Acids Res
, vol.32
-
-
Qi, J.1
Luo, H.2
Hao, B.3
-
21
-
-
0035898770
-
Distance, correlation and mutual information among portraits of organisms based on complete genomes
-
Yu ZG, Jiang P, ((2001)) Distance, correlation and mutual information among portraits of organisms based on complete genomes. Phys Lett A 286:: 34--46.
-
(2001)
Phys Lett A
, vol.286
, pp. 34-46
-
-
Yu, Z.G.1
Jiang, P.2
-
22
-
-
19944366976
-
Phylogeny of prokaryotes and chloroplasts revealed by a simple composition approach on all protein sequences from whole genome without sequence alignment
-
Yu ZG, Zhou LQ, Anh VV, Chu KH, Long SC, et al. ((2005)) Phylogeny of prokaryotes and chloroplasts revealed by a simple composition approach on all protein sequences from whole genome without sequence alignment. J Mol Evol 60:: 538--545.
-
(2005)
J Mol Evol
, vol.60
, pp. 538-545
-
-
Yu, Z.G.1
Zhou, L.Q.2
Anh, V.V.3
Chu, K.H.4
Long, S.C.5
-
23
-
-
77950895944
-
Proper distance matrices for phylogenetic analysis using complete genomes without sequence alignment
-
Yu ZG, Zhan XW, Han GS, Wang RW, Anh V, et al. ((2010)) Proper distance matrices for phylogenetic analysis using complete genomes without sequence alignment. Int J Mol Sci 11:: 1141--1154.
-
(2010)
Int J Mol Sci
, vol.11
, pp. 1141-1154
-
-
Yu, Z.G.1
Zhan, X.W.2
Han, G.S.3
Wang, R.W.4
Anh, V.5
-
24
-
-
1242352070
-
Origin and phylogeny of chloroplasts revealed by a simple correlation analysis of complete genomes
-
Chu KH, Qi J, Yu ZG, Anh V, ((2004)) Origin and phylogeny of chloroplasts revealed by a simple correlation analysis of complete genomes. Mol Biol Evol 21:: 200--206.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 200-206
-
-
Chu, K.H.1
Qi, J.2
Yu, Z.G.3
Anh, V.4
-
25
-
-
34047110724
-
Whole genome molecular phylogeny of large dsDNA viruses using composition vector method
-
Gao L, Qi J, ((2007)) Whole genome molecular phylogeny of large dsDNA viruses using composition vector method. BMC Evol Biol 7:: 41.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 41
-
-
Gao, L.1
Qi, J.2
-
26
-
-
77953661117
-
Whole-proteome phylogeny of large dsDNA viruses and parvoviruses through a composition vector method related to dynamical language model
-
Yu ZG, Chu KH, Li CP, Anh V, Zhou LQ, et al. ((2010)) Whole-proteome phylogeny of large dsDNA viruses and parvoviruses through a composition vector method related to dynamical language model. BMC Evol Biol 10:: 192.
-
(2010)
BMC Evol Biol
, vol.10
, pp. 192
-
-
Yu, Z.G.1
Chu, K.H.2
Li, C.P.3
Anh, V.4
Zhou, L.Q.5
-
27
-
-
69949152972
-
A fungal phylogeny based on 82 complete genomes using the composition vector method
-
Wang H, Xu Z, Gao L, Hao B, ((2009)) A fungal phylogeny based on 82 complete genomes using the composition vector method. BMC Evol Biol 9:: 195.
-
(2009)
BMC Evol Biol
, vol.9
, pp. 195
-
-
Wang, H.1
Xu, Z.2
Gao, L.3
Hao, B.4
-
28
-
-
0023375195
-
The neighbour-joining method: a new method for reconstructing phylogenetic trees
-
Saitou N, Nei M, ((1987)) The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 10:: 471--483.
-
(1987)
Mol Biol Evol
, vol.10
, pp. 471-483
-
-
Saitou, N.1
Nei, M.2
-
29
-
-
0000122573
-
PHYLIP-phylogeny inference package (version 3.2)
-
Felsenstein J, ((1989)) PHYLIP-phylogeny inference package (version 3.2). Cladistics 5:: 164--166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
30
-
-
13244255415
-
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
-
Edgar RC, ((2004)) MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:: 113.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
31
-
-
79957613599
-
MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. ((2011)) MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:: 2731--2739.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
-
32
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura M, ((1980)) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:: 111--120.
-
(1980)
J Mol Evol
, vol.16
, pp. 111-120
-
-
Kimura, M.1
|