Analysis of antimicrobial resistance genes detected in multiple-drug- resistant Escherichia coli isolates from broiler chicken carcasses

Microbial Drug Resistance

Volumn 18, Issue 4, 2012, Pages 453-463

  Glenn, Lashanda M ^a   Englen, Mark D ^a   Lindsey, Rebecca L ^a   Frank, Joseph F ^b   Turpin, Jennifer E ^a   Berrang, Mark E ^a   Meinersmann, Richard J ^a   Fedorka Cray, Paula J ^a   Frye, Jonathan G ^a  

^a RUSSELL RESEARCH CENTER   (United States)

^b UNIVERSITY OF GEORGIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINOGLYCOSIDE ANTIBIOTIC AGENT; AMOXICILLIN PLUS CLAVULANIC ACID; AMPICILLIN; BETA LACTAM ANTIBIOTIC; CEFOXITIN; CEFTIOFUR; CHLORAMPHENICOL; CIPROFLOXACIN; GENTAMICIN; INTEGRASE; KANAMYCIN; NALIDIXIC ACID; STREPTOMYCIN; SULFAMETHOXAZOLE; SULFONAMIDE; TETRACYCLINE; TETRACYCLINE DERIVATIVE; TRIMETHOPRIM;

AAC(3) GENE; AAC(6) GENE; AADA GENE; ANTIBIOTIC RESISTANCE; APH GENE; ARTICLE; BACTERIAL GENE; BACTERIUM ISOLATE; BLA AMPC GENE; BLA CMY GENE; BLA PSE 1 GENE; BLA TEM GENE; BROILER; CARCASS; CAT GENE; CHICKEN; CMLA GENE; COMMENSAL ESCHERICHIA COLI; DFRA GENE; ENTEROBACTERIACEAE; FLO GENE; GENE AMPLIFICATION; GENE CASSETTE; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC CONSERVATION; INTI1 GENE; MICROARRAY ANALYSIS; MICROBIAL COMMUNITY; MOLECULAR SIZE; MULTIDRUG RESISTANCE; NONHUMAN; PLASMID; POLYMERASE CHAIN REACTION; POULTRY; PRIORITY JOURNAL; REPLICON; STRA GENE; STRB GENE; SULI GENE; SULII GENE; TET(A) GENE; TET(D) GENE; TETR GENE;

ANIMALS; ANTI-BACTERIAL AGENTS; CHICKENS; DRUG RESISTANCE, MULTIPLE, BACTERIAL; ESCHERICHIA COLI; ESCHERICHIA COLI INFECTIONS; GENE TRANSFER, HORIZONTAL; GENES, BACTERIAL; INTEGRONS; MICROARRAY ANALYSIS; MICROBIAL SENSITIVITY TESTS; PHYLOGENY; PLASMIDS; POLYMERASE CHAIN REACTION; POULTRY DISEASES;

ANIMALIA; ENTEROBACTERIACEAE; ESCHERICHIA COLI;

EID: 84864355326     PISSN: 10766294     EISSN: 19318448     Source Type: Journal    
DOI: 10.1089/mdr.2011.0224     Document Type: Article

References (48)

1. Aarestrup, F.M., and H.C. Wegener. 1999. The effects of antibiotic usage in food animals on the development of antimicrobial resistance of importance for humans in Campylobacter and Escherichia coli. Microbes Infect. 1:639-644.
2. Ahmed, A.M., S. Miyoshi, S. Shinoda, and T. Shimamoto. 2005. Molecular characterization of a multidrug-resistant strain of enteroinvasive Escherichia coli O164 isolated in Japan. J. Med. Microbiol. 54:273-278.
3. Ajiboye, R.M., O.D. Solberg, B.M. Lee, E. Raphael, C. Debroy, and L.W. Riley. 2009. Global spread of mobile antimicrobial drug resistance determinants in human and animal Escherichia coli and Salmonella strains causing community- acquired infections. Clin. Infect. Dis. 49:365-371.
4. Bass, L., C.A. Liebert, M.D. Lee, A.O. Summers, D.G. White, S.G. Thayer, and J.J. Maurer. 1999. Incidence and characterization of integrons, genetic elements mediating multiple-drug resistance, in avian Escherichia coli. Antimicrob. Agents Chemother. 43:2925-2929.
5. Bradford, P.A. 2001. Extended-spectrum beta-lactamases in the 21st century: Characterization, epidemiology, and detection of this important resistance threat. Clin. Microbiol. Rev. 14:933-951, table.
6. Carattoli, A. 2003. Plasmid-mediated antimicrobial resistance in Salmonella enterica. Curr. Issues Mol. Biol. 5:113-122.
7. Carattoli, A., A. Bertini, L. Villa, V. Falbo, K.L. Hopkins, and E.J. Threlfall. 2005. Identification of plasmids by PCRbased replicon typing. J. Microbiol. Methods 63:219-228.
8. Carattoli, A., V. Miriagou, A. Bertini, A. Loli, C. Colinon, L. Villa, J.M. Whichard, and G.M. Rossolini. 2006. Replicon typing of plasmids encoding resistance to newer betalactams. Emerg. Infect. Dis. 12:1145-1148.
9. Chen, S., S. Zhao, D.G. White, C.M. Schroeder, R. Lu, H. Yang, P.F. McDermott, S. Ayers, and J. Meng. 2004. Characterization of multiple- antimicrobial-resistant salmonella serovars isolated from retail meats. Appl. Environ. Microbiol. 70:1-7.
10. Cocchi, S., E. Grasselli, M. Gutacker, C. Benagli, M. Convert, and J.C. Piffaretti. 2007. Distribution and characterization of integrons in Escherichia coli strains of animal and human origin. FEMS Immunol. Med. Microbiol. 50: 126-132.
11. de Hoon,M.J., S. Imoto, J. Nolan, and S.Miyano. 2004. Open source clustering software. Bioinformatics 20:1453-1454.
12. Du, X., Z. Shen, B. Wu, S. Xia, and J. Shen. 2005. Characterization of class 1 integrons-mediated antibiotic resistance among calf pathogenic Escherichia coli. FEMS Microbiol. Lett. 245:295-298.
13. Eisen, M.B., P.T. Spellman, P.O. Brown, and D. Botstein. 1998. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. U. S. A. 95:14863-14868.
14. Evershed, N.J., R.S. Levings, N.L. Wilson, S.P. Djordjevic, and R.M. Hall. 2009. Unusual class 1 integron-associated gene cassette configuration found in IncA/C plasmids from Salmonella enterica. Antimicrob. Agents Chemother. 53:2640-2642.
15. Excoffier, L., G. Laval, and S. Schneider. 2005. Arlequin (version 3.0): An integrated software package for population genetics data analysis. Evol. Bioinform. Online 1:47-50.
16. Franck, S.M., B.T. Bosworth, and H.W. Moon. 1998. Multiplex PCR for enterotoxigenic, attaching and effacing, and shiga toxin-producing Escherichia coli strains from calves. J. Clin. Microbiol. 36:1795-1797.
17. Fricke, W.F., P.F. McDermott, M.K. Mammel, S. Zhao, T.J. Johnson, D.A. Rasko, P.J. Fedorka-Cray, A. Pedroso, J.M. Whichard, J.E. LeClerc, D.G. White, T.A. Cebula, and J. Ravel. 2009. Antimicrobial resistance-conferring plasmids with similarity to virulence plasmids from avian pathogenic Escherichia coli strains in Salmonella enterica serovar Kentucky isolates from poultry. Appl. Environ. Microbiol. 75:5963-5971.
18. Frye, J.G., T. Jesse, F. Long, G. Rondeau, S. Porwollik, M. McClelland, C.R. Jackson, M. Englen, and P.J. Fedorka- Cray. 2006. DNA microarray detection of antimicrobial resistance genes in diverse bacteria. Int. J. Antimicrob. Agents 27:138-151.
19. Frye, J.G., R.L. Lindsey, R.J. Meinersmann, M.E. Berrang, C.R. Jackson, M.D. Englen, J.B. Turpin, and P.J. Fedorka- Cray. 2011. Related antimicrobial resistance genes detected in different bacterial species co-isolated from swine fecal samples. Foodborne Pathog. Dis. 8:663-679.
20. Frye, J.G., R.L. Lindsey, G. Rondeau, S. Porwollik, F. Long, M. McClelland, C.R. Jackson, M.D. Englen, R.J. Meinersmann, M.E. Berrang, J.A. Davis, J.B. Barrett, J.B. Turpin, S.N. Thitaram, and P.J. Fedorka-Cray. 2009.Development of a DNA microarray to detect antimicrobial resistance genes identified in the National Center for Biotechnology Information database. Microb. Drug Resist. 16:9-19.
21. Glenn, L.M., R.L. Lindsey, J.F. Frank, R.J. Meinersmann, M.D. Englen, P.J. Fedorka-Cray, and J.G. Frye. 2011. Analysis of antimicrobial resistance genes detected in multidrug-resistant Salmonella enterica serovar Typhimurium isolated from food animals. Microb. Drug Resist. 17: 407-418.
22. Ho, P.L., R.C. Wong, K.H. Chow, and T.L. Que. 2009. Distribution of integron-associated trimethoprimsulfamethoxazole resistance determinants among Escherichia coli from humans and food-producing animals. Lett. Appl. Microbiol. 49:627-634.
23. Hyma, K.E., D.W. Lacher, A.M. Nelson, A.C. Bumbaugh, J.M. Janda, N.A. Strockbine, V.B. Young, and T.S. Whittam. 2005. Evolutionary genetics of a new pathogenic Escherichia species: Escherichia albertii and related Shigella boydii strains. J. Bacteriol. 187:619-628.
24. Johnson, T.J., Y.M. Wannemuehler, S.J. Johnson, C.M. Logue, D.G. White, C. Doetkott, and L.K. Nolan. 2007. Plasmid replicon typing of commensal and pathogenic Escherichia coli isolates. Appl. Environ. Microbiol. 73:1976-1983.
25. Kadlec, K., and S. Schwarz. 2008. Analysis and distribution of class 1 and class 2 integrons and associated gene cassettes among Escherichia coli isolates from swine, horses, cats and dogs collected in the BfT-GermVet monitoring study. J. Antimicrob. Chemother. 62:469-473.
26. Krauland, M.G., J.W. Marsh, D.L. Paterson, and L.H. Harrison. 2009. Integron-mediated multidrug resistance in global collection of nontyphoidal Salmonella enterica isolates. Emerg. Infect. Dis. 15:388-396.
27. Lavigne, J.P., and A.B. Blanc-Potard. 2008. Molecular evolution of Salmonella enterica serovar Typhimurium and pathogenic Escherichia coli: From pathogenesis to therapeutics. Infect. Genet. Evol. 8:217-226.
28. Levesque, C., L. Piche, C. Larose, and P.H. Roy. 1995. PCR mapping of integrons reveals several novel combinations of resistance genes. Antimicrob. Agents Chemother. 39: 185-191.
29. Lindsey, R.L., P.J. Fedorka-Cray, J.G. Frye, and R.J. Meinersmann. 2009. Inc A/C plasmids are prevalent in multidrug- resistant Salmonella enterica isolates. Appl. Environ. Microbiol. 75:1908-1915.
30. Lindsey, R.L., J.G. Frye, P.J. Fedorka-Cray, and R.J. Meinersmann. 2011. Microarray-based analysis of IncA/C plasmid-associated genes from multidrug-resistant Salmonella enterica. Appl. Environ. Microbiol. 77:6991-6999.
31. Lindsey, R.L., J.G. Frye, P.J. Fedorka-Cray, T.J. Welch, and R.J. Meinersmann. 2010. An oligonucleotide microarray to characterize multidrug resistant plasmids. J. Microbiol. Methods 81:96-100.
32. Lindsey, R.L., J.G. Frye, S.N. Thitaram, R.J. Meinersmann, P.J. Fedorka-Cray, and M.D. Englen. 2011. Characterization of multidrug-resistant Escherichia coli by antimicrobial resistance profiles, plasmid replicon typing, and pulsed-field gel electrophoresis. Microb. Drug Resist. 17:157-163.
33. Lu, L., L. Dai, Y. Wang, C. Wu, X. Chen, L. Li, Y. Qi, L. Xia, and J. Shen. 2010. Characterization of antimicrobial resistance and integrons among Escherichia coli isolated from animal farms in Eastern China. Acta Trop. 113:20-25.
34. Novais, A., F. Baquero, E. Machado, R. Canton, L. Peixe, and T.M. Coque. 2010. International spread and persistence of TEM-24 is caused by the confluence of highly penetrating Enterobacteriaceae clones and an IncA/C2 plasmid containing Tn1696::Tn1 and IS5075-Tn21. Antimicrob. Agents Chemother. 54:825-834.
35. Pitout, J.D., and K.B. Laupland. 2008. Extended-spectrum beta-lactamase-producing Enterobacteriaceae: An emerging public-health concern. Lancet Infect. Dis. 8:159-166.
36. Ploy, M.C., T. Lambert, J.P. Couty, and F. Denis. 2000. Integrons: An antibiotic resistance gene capture and expression system. Clin. Chem. Lab. Med. 38:483-487.
37. Post, V., G.D. Recchia, and R.M. Hall. 2007. Detection of gene cassettes in Tn402-like class 1 integrons. Antimicrob. Agents Chemother. 51:3467-3468.
38. Presscott, L.M., and J.P. Harley. 2002. Microbiology. McGraw Hill, New York.
39. Saldanha, A.J. 2004. Java Treeview-extensible visualization of microarray data. Bioinformatics 20:3246-3248.
40. San, M.B., L. Lapierre, J. Cornejo, and S. Bucarey. 2008. Characterization of antibiotic resistance genes linked to class 1 and 2 integrons in strains of Salmonella spp. isolated from swine. Can. J. Microbiol. 54:569-576.
41. Schroeder, C.M., D.G. White, and J. Meng. 2004. Retail meat and poultry as a reservoir of antimicrobial-resistant Escherichia coli. Food Microbiol. 21:249-255.
42. Schwarz, S., C. Kehrenberg, B. Doublet, and A. Cloeckaert. 2004. Molecular basis of bacterial resistance to chloramphenicol and florfenicol. FEMS Microbiol. Rev. 28: 519-542.
43. Shaw, K.J., P.N. Rather, R.S. Hare, and G.H. Miller. 1993. Molecular genetics of aminoglycoside resistance genes and familial relationships of the aminoglycoside-modifying enzymes. Microbiol. Rev. 57:138-163.
44. Slatkin, M. 1994. Linkage disequilibrium in growing and stable populations. Genetics 137:331-336.
45. Tamang, M.D., J.Y. Oh, S.Y. Seol, H.Y. Kang, J.C. Lee, Y.C. Lee, D. T. Cho, and J. Kim. 2007. Emergence of multidrugresistant Salmonella enterica serovar Typhi associated with a class 1 integron carrying the dfrA7 gene cassette in Nepal. Int. J. Antimicrob. Agents 30:330-335.
46. Tankson, J.D., P.J. Fedorka-Cray, C.R. Jackson, and M. Headrick. 2006. Genetic relatedness of a rarely isolated Salmonella: Salmonella enterica serotype Niakhar from NARMS animal isolates. J. Antimicrob. Chemother. 57:190-198.
47. Von Baum, H., and R. Marre. 2005. Antimicrobial resistance of Escherichia coli and therapeutic implications. Int. J. Med. Microbiol. 295:503-511.
48. Welch, T.J., W.F. Fricke, P.F. McDermott, D.G. White, M.L. Rosso, D.A. Rasko, M.K. Mammel, M. Eppinger, M.J. Rosovitz, D. Wagner, L. Rahalison, J.E. LeClerc, J.M. Hinshaw, L.E. Lindler, T.A. Cebula, E. Carniel, and J. Ravel. 2007. Multiple antimicrobial resistance in plague: An emerging public health risk. PLoS ONE 2:e309.