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Volumn 39, Issue 6, 2012, Pages 6825-6834

Analysis of expressed sequence tags from grapevine flower and fruit and development of simple sequence repeat markers

Author keywords

CDNA library SSR; Expressed sequence tags; Grapevine

Indexed keywords

COMPLEMENTARY DNA;

EID: 84864290708     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-012-1507-1     Document Type: Article
Times cited : (9)

References (61)
  • 1
    • 34848886909 scopus 로고    scopus 로고
    • The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    • The French-Italian Public Consortium For Grapevine Genome Characterization
    • The French-Italian Public Consortium for Grapevine Genome Characterization (2007) The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449:463-468
    • (2007) Nature , vol.449 , pp. 463-468
  • 2
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant arabidopsis thaliana
    • Arabidopsis Genome Initiative
    • Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796-815
    • (2000) Nature , vol.408 , pp. 796-815
  • 3
    • 84864279685 scopus 로고    scopus 로고
    • The map-based sequence of the rice genome
    • International Rice Genome Sequencing Project
    • International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436:344-356
    • (2005) Nature , vol.436 , pp. 344-356
  • 5
    • 0034987865 scopus 로고    scopus 로고
    • A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development
    • DOI 10.1023/A:1010634132156
    • Boss PK, Vivier M, Matsumoto S, Dry IB, Thomas MR (2001) A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development. Plant Mol Biol 45:541-553 (Pubitemid 32515948)
    • (2001) Plant Molecular Biology , vol.45 , Issue.5 , pp. 541-553
    • Boss, P.K.1    Vivier, M.2    Matsumoto, S.3    Dry, I.B.4    Thomas, M.R.5
  • 6
    • 33748101548 scopus 로고    scopus 로고
    • EST databases as a source for molecular markers: Lessons from Helianthus
    • DOI 10.1093/jhered/esl013
    • Pashley CH, Ellis JR, McCauley DE, Burke JM (2006) EST databases as a source for molecular markers: lessons from Helianthus. J Hered 97:381-388 (Pubitemid 44306041)
    • (2006) Journal of Heredity , vol.97 , Issue.4 , pp. 381-388
    • Pashley, C.H.1    Ellis, J.R.2    McCauley, D.E.3    Burke, J.M.4
  • 8
    • 10344221610 scopus 로고    scopus 로고
    • Generation and analysis of expressed sequence tags from the tender shoots cDNA library of tea plant (Camellia sinensis)
    • DOI 10.1016/j.plantsci.2004.08.009, PII S0168945204003796
    • Chen L, Zhao L, Gao Q (2005) Generation and analysis of expressed sequence tags from the tender shoots cDNA library of tea plant (Camellia sinensis). Plant Sci 168:359-363 (Pubitemid 39623123)
    • (2005) Plant Science , vol.168 , Issue.2 , pp. 359-363
    • Chen, L.1    Zhao, L.-P.2    Gao, Q.-K.3
  • 9
    • 84864285110 scopus 로고    scopus 로고
    • Study on methods of extracting total RNA from grape inflorescence
    • (in Chinese)
    • Zhao W, Zhong C, Cao H, Chen L, Pu R (2009) Study on methods of extracting total RNA from grape inflorescence. J Anhui Agric Sci 37:16161-16162 (in Chinese)
    • (2009) J Anhui Agric Sci , vol.37 , pp. 16161-16162
    • Zhao, W.1    Zhong, C.2    Cao, H.3    Chen, L.4    Pu, R.5
  • 11
    • 0034014059 scopus 로고    scopus 로고
    • Genomic approaches to plant stress tolerance
    • DOI 10.1016/S1369-5266(99)00052-7
    • Cushman JC, Bohnert H (2000) Genomic approaches to plant stress tolerance. Curr Opin Plant Biol 3:117-124 (Pubitemid 30157014)
    • (2000) Current Opinion in Plant Biology , vol.3 , Issue.2 , pp. 117-124
    • Cushman, J.C.1    Bohnert, H.J.2
  • 12
    • 0036007675 scopus 로고    scopus 로고
    • DNA microarrays for functional plant genomics
    • DOI 10.1023/A:1013734019946
    • Aharoni A, Vorst O (2002) DNA microarrays for functional plant genomics. Plant Mol Biol 48:99-118 (Pubitemid 34128495)
    • (2002) Plant Molecular Biology , vol.48 , Issue.1-2 , pp. 99-118
    • Aharoni, A.1    Vorst, O.2
  • 13
    • 33751234803 scopus 로고    scopus 로고
    • An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development
    • Reid KE, Olsson N, Schlosser J, Peng F, Lund ST (2006) An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development. BMC Plant Biol 6:27
    • (2006) BMC Plant Biol , vol.6 , pp. 27
    • Reid, K.E.1    Olsson, N.2    Schlosser, J.3    Peng, F.4    Lund, S.T.5
  • 15
    • 7944237619 scopus 로고    scopus 로고
    • A comprehensive gene expression analysis toward the understanding of growth and differentiation of tobacco BY-2 cells
    • Matsuoka K, Demura T, Galis I, Horiguchi T, Sasaki M, Tashiro G, Fukuda HA (2004) A comprehensive gene expression analysis towards the understanding of growth and differentiation of tobacco BY-2 cells. Plant Cell Physiol 45:1280-1289 (Pubitemid 39464863)
    • (2004) Plant and Cell Physiology , vol.45 , Issue.9 , pp. 1280-1289
    • Matsuoka, K.1    Demura, T.2    Galis, I.3    Horiguchi, T.4    Sasaki, M.5    Tashiro, G.6    Fukuda, H.7
  • 16
    • 1542375250 scopus 로고    scopus 로고
    • A cDNA library functional screening strategy based on fluorescent protein complementation assays to identify novel components of signaling pathways
    • DOI 10.1016/j.ymeth.2003.10.011, PII S1046202303002676
    • Remy I, Michnick SW (2004) A cDNA library functional screening strategy based on fluorescent protein complementation assays to identify novel components of signaling pathways. Methods 32:381-388 (Pubitemid 38299329)
    • (2004) Methods , vol.32 , Issue.4 , pp. 381-388
    • Remy, I.1    Michnick, S.W.2
  • 17
    • 34447311672 scopus 로고    scopus 로고
    • MedicCyc: A biochemical pathway database for Medicago truncatula
    • DOI 10.1093/bioinformatics/btm040
    • Urbanczyk-Wochniak E, Sumner LW (2007) MedicCyc: a biochemical pathway database for Medicago truncatula. Bioinfor-matics 23:1418-1423 (Pubitemid 47050525)
    • (2007) Bioinformatics , vol.23 , Issue.11 , pp. 1418-1423
    • Urbanczyk-Wochniak, E.1    Sumner, L.W.2
  • 18
    • 1542351290 scopus 로고    scopus 로고
    • EST analysis of genes involved in secondary metabolism in camellia sinensis (tea) using suppression subtractive hybridization
    • Park JS, Kim JB, Haha BS, Kim KH, Ha SH, Kim JB, Kim YH (2004) EST analysis of genes involved in secondary metabolism in Camellia sinensis (tea) using suppression subtractive hybridization. Plant Sci 166:953-961
    • (2004) Plant Sci , vol.166 , pp. 953-961
    • Park, J.S.1    Kim, J.B.2    Haha, B.S.3    Kim, K.H.4    Ha, S.H.5    Kim, J.B.6    Kim, Y.H.7
  • 19
    • 0036315698 scopus 로고    scopus 로고
    • Isolation of infection-specific sequence tags expressed during early stages of maize anthracnose disease development
    • DOI 10.1046/j.1364-3703.2002.00113.x
    • Sugui JA, Deising HB (2002) Isolation of infection-specific sequence tags expressed during early stages of maize anthracnose disease development. Mol Plant Pathol 3:197-203 (Pubitemid 34824971)
    • (2002) Molecular Plant Pathology , vol.3 , Issue.4 , pp. 197-203
    • Sugui, J.A.1    Deising, H.B.2
  • 20
    • 72749100162 scopus 로고    scopus 로고
    • Construction and expressed sequence tags analysis of young roots cdna library of tea plant
    • (in Chinese)
    • Zhao L, Ma C, Chen L (2008) Construction and expressed sequence tags analysis of young roots cDNA library of tea plant. Mol Plant Breed 6:893-898 (in Chinese)
    • (2008) Mol Plant Breed , vol.6 , pp. 893-898
    • Zhao, L.1    Ma, C.2    Chen, L.3
  • 21
    • 77954411025 scopus 로고    scopus 로고
    • Analysis of expressed sequence tags from prunus mume flower and fruit and development of simple sequence repeat markers
    • Li XY, Shangguan LF, Song CN, Wang C, Gao ZH, Yu HP, Fang JG (2010) Analysis of expressed sequence tags from Prunus mume flower and fruit and development of simple sequence repeat markers. BMC Genet 11:66
    • (2010) BMC Genet , vol.11 , pp. 66
    • Li, X.Y.1    Shangguan, L.F.2    Song, C.N.3    Wang, C.4    Gao, Z.H.5    Yu, H.P.6    Fang, J.G.7
  • 23
    • 34548785463 scopus 로고    scopus 로고
    • Generation of ESTs in Vitis vinifera wine grape (Cabernet Sauvignon) and table grape (Muscat Hamburg) and discovery of new candidate genes with potential roles in berry development
    • DOI 10.1016/j.gene.2007.07.016, PII S0378111907003976
    • Peng FY, Reid KE, Liao N, Schlosser J, Lijavetzky D, Holt R, Martínez Zapater JM, Jones S, Marra M, Bohlmann J, Lund ST (2007) Generation of ESTs in Vitis vinifera wine grape (Cabernet sauvignon) and table grape (Muscat hamburg) and discovery of new candidate genes with potential roles in berry development. Gene 402:40-50 (Pubitemid 47422351)
    • (2007) Gene , vol.402 , Issue.1-2 , pp. 40-50
    • Peng, F.Y.1    Reid, K.E.2    Liao, N.3    Schlosser, J.4    Lijavetzky, D.5    Holt, R.6    Martinez Zapater, J.M.7    Jones, S.8    Marra, M.9    Bohlmann, J.10    Lund, S.T.11
  • 24
    • 0034937748 scopus 로고    scopus 로고
    • Assessment of genotypic variation among cultivated durum wheat based on EST-SSRS and genomic SSRS
    • DOI 10.1023/A:1017537720475
    • Eujayl I, Sorrells ME, Baum M, Wolters P, Powell W (2001) Assessment of genotypic variation among cultivated durum wheat based on EST-SSRs and genomic SSR. Euphytica 119:39-43 (Pubitemid 32632236)
    • (2001) Euphytica , vol.119 , Issue.1-2 , pp. 39-43
    • Eujayl, I.1    Sorrells, M.2    Baum, M.3    Wolters, P.4    Powell, W.5
  • 25
    • 0142123062 scopus 로고    scopus 로고
    • Assessment of est-and genomic microsatellite markers for variety discrimination and genetic diversity studies in wheat
    • Fiona L, Vince LL, John L, Petra W, Wayne P, Paolo D (2003) Assessment of EST-and genomic microsatellite markers for variety discrimination and genetic diversity studies in wheat. Euphytica 133:359-366
    • (2003) Euphytica , vol.133 , pp. 359-366
    • Fiona, L.1    Vince, L.L.2    John, L.3    Petra, W.4    Wayne, P.5    Paolo, D.6
  • 26
    • 11344276529 scopus 로고    scopus 로고
    • Genic microsatellite markers in plants: Features and applications
    • Varshney R, Granner A, Sorrells M (2006) Genic microsatellite markers in plants: features and applications. Trends Biotech 23:48-55
    • (2006) Trends Biotech , vol.23 , pp. 48-55
    • Varshney, R.1    Granner, A.2    Sorrells, M.3
  • 28
    • 11344274164 scopus 로고    scopus 로고
    • EST versus genomic derived microsatellite markers for genotyping wild and cultivated barley
    • DOI 10.1007/s10722-003-6112-7
    • Chabane K, Ablett GA, Cordeiro GM, Valkoun J, Henry RJ (2005) EST versus genomic derived microsatellite markers for genotyping wild and cultivated barley. Genet Resour Crop Evol 52:903-909 (Pubitemid 43163363)
    • (2005) Genetic Resources and Crop Evolution , vol.52 , Issue.7 , pp. 903-909
    • Chabane, K.1    Ablett, G.A.2    Cordeiro, G.M.3    Valkoun, J.4    Henry, R.J.5
  • 29
    • 33751310598 scopus 로고    scopus 로고
    • Development of EST-SSRs in Cucumis sativus from sequence database
    • DOI 10.1111/j.1471-8286.2006.01500.x
    • Kong Q, Xiang C, Yu Z (2006) Development of EST-SSRs in Cucumis sativus from sequence database. Mol Ecol Notes 6:1234-1236 (Pubitemid 44807994)
    • (2006) Molecular Ecology Notes , vol.6 , Issue.4 , pp. 1234-1236
    • Kong, Q.1    Xiang, C.2    Yu, Z.3
  • 30
    • 68049100117 scopus 로고    scopus 로고
    • Identification of wheat cultivars using EST-SSR markers
    • Fujita Y, Fukuoka H, Yano H (2009) Identification of wheat cultivars using EST-SSR markers. Breed Sci 59:159-167
    • (2009) Breed Sci , vol.59 , pp. 159-167
    • Fujita, Y.1    Fukuoka, H.2    Yano, H.3
  • 31
    • 37549030569 scopus 로고    scopus 로고
    • EST-SSR markers for asparagus genetic diversity evaluation and cultivar identification
    • Caruso M, Federici CT, Rosse ML (2008) EST-SSR markers for asparagus genetic diversity evaluation and cultivar identification. Mol Breed 21:195-204
    • (2008) Mol Breed , vol.21 , pp. 195-204
    • Caruso, M.1    Federici, C.T.2    Rosse, M.L.3
  • 32
    • 33747428664 scopus 로고    scopus 로고
    • EST-SSR markers from Fragaria vesca L. cv. Yellow Wonder
    • DOI 10.1111/j.1471-8286.2006.01351.x
    • Bassil NV, Njuguna W, Slovin JP (2006) EST-SSR markers from Fragaria vesca L. cv. Yellow Wonder. Mol Ecol Notes 6:806-809 (Pubitemid 44252613)
    • (2006) Molecular Ecology Notes , vol.6 , Issue.3 , pp. 806-809
    • Bassil, N.V.1    Njuguna, W.2    Slovin, J.P.3
  • 33
    • 33847351223 scopus 로고    scopus 로고
    • A set of EST-SSRs isolated from peach fruit transcriptome and their transportability across Prunus species: Primer note
    • DOI 10.1111/j.1471-8286.2006.01590.x
    • Vendramin E, Deitori MT, Giovlnazzi J, Micali S, Quarta R, Verde I (2007) A set of EST-SSRs isolated from peach fruit transcriptome and their transportability across Prunus species. Mol Ecol Notes 7:307-310 (Pubitemid 46339152)
    • (2007) Molecular Ecology Notes , vol.7 , Issue.2 , pp. 307-310
    • Vendramin, E.1    Dettori, M.T.2    Giovinazzi, J.3    Micali, S.4    Quarta, R.5    Verde, I.6
  • 36
  • 37
    • 79960033518 scopus 로고    scopus 로고
    • Mining and validating grape (Vitis L.) ests to develop EST-SSR markers for genotyping and mapping
    • Huang H, Lu J, Ren ZB, Hunter W, Dowd SE, Dang P (2011) Mining and validating grape (Vitis L.) ESTs to develop EST-SSR markers for genotyping and mapping. Mol Breed 28:241-254
    • (2011) Mol Breed , vol.28 , pp. 241-254
    • Huang, H.1    Lu, J.2    Ren, Z.B.3    Hunter, W.4    Dowd, S.E.5    Dang, P.6
  • 38
    • 0037854629 scopus 로고    scopus 로고
    • Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)
    • Thiel T, Michalek W, Varshney RK, Graner A (2003) Exploiting EST databases for the development and characterization of gene derived SSR-markers in barley (Hordeum vulgare L.). Theor Appl Genet 106:411-422 (Pubitemid 36599853)
    • (2003) Theoretical and Applied Genetics , vol.106 , Issue.3 , pp. 411-422
    • Thiel, T.1    Michalek, W.2    Varshney, R.K.3    Graner, A.4
  • 39
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing B, Hillier L, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8:175-185 (Pubitemid 28177229)
    • (1998) Genome Research , vol.8 , Issue.3 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 40
    • 0032849859 scopus 로고    scopus 로고
    • A DNA sequence assembly program
    • Huan X, Madan A (1999) A DNA sequence assembly program. Genome Res 9:868-877
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huan, X.1    Madan, A.2
  • 41
    • 0025835296 scopus 로고
    • Fast and sensitive silver staining of DNA in polyacrylamide gels
    • Bassam BJ, Caetano-anolles G, Gresshoff PM (1991) Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal Biochem 196:80-83
    • (1991) Anal Biochem , vol.196 , pp. 80-83
    • Bassam, B.J.1    Caetano-Anolles, G.2    Gresshoff, P.M.3
  • 43
    • 0345393209 scopus 로고    scopus 로고
    • Generation and analysis of expressed sequence tags from almond (Prunus dulcis Mill.) pistils
    • Jiang YQ, Ma RC (2003) Generation and analysis of expressed sequence tags from almond (Prunus dulcis Mill.) pistils. Sex Plant Reprod 16:197-207
    • (2003) Sex Plant Reprod , vol.16 , pp. 197-207
    • Jiang, Y.Q.1    Ma, R.C.2
  • 45
    • 0029889221 scopus 로고    scopus 로고
    • Local alignment statistics
    • DOI 10.1016/S0076-6879(96)66029-7
    • Altschul SF, Gish W (1996) Local alignment statistics. Methods Enzymol 266:460-480 (Pubitemid 26165883)
    • (1996) Methods in Enzymology , vol.266 , pp. 460-480
    • Altschul, S.F.1    Gish, W.2
  • 47
    • 0038117702 scopus 로고    scopus 로고
    • An expressed sequence tag (EST) set from Citrus sinensis L. Osbeck whole seedlings and the implications of further perennial source investigations
    • DOI 10.1016/S0168-9452(03)00202-4
    • Bausher M, Shatters R, Chaparro J, Dang P, Hunter W, Niedz R (2003) An expressed sequence tag (EST) set from Citrus sinensis L. Osbeck whole seedlings and the implications of further perennial source investigations. Plant Sci 165:415-422 (Pubitemid 36872329)
    • (2003) Plant Science , vol.165 , Issue.2 , pp. 415-422
    • Bausher, M.1    Shatters, R.2    Chaparro, J.3    Dang, P.4    Hunter, W.5    Niedz, R.6
  • 48
    • 65549148685 scopus 로고    scopus 로고
    • Utility of EST derived SSR in cultivated peanut (Arachis hypo-gaea L) and arachis wild species
    • Liang X, Chen X, Hong Y, Liu H, Zhou G, Li S, Guo B (2009) Utility of EST derived SSR in cultivated peanut (Arachis hypo-gaea L) and Arachis wild species. BMC Plant Biol 9:35
    • (2009) BMC Plant Biol , vol.9 , pp. 35
    • Liang, X.1    Chen, X.2    Hong, Y.3    Liu, H.4    Zhou, G.5    Li, S.6    Guo, B.7
  • 49
    • 66749095408 scopus 로고    scopus 로고
    • A white campion (Silene latifolia) flora expressed sequence tag (EST) library: Annotation, EST-SSR characterization, transferability, and utility for comparative mapping
    • Moccia M, Oger-Desfeux C, Marais G, Widmer A (2009) A White Campion (Silene latifolia) flora expressed sequence tag (EST) library: annotation, EST-SSR characterization, transferability, and utility for comparative mapping. BMC Genomics 10:243
    • (2009) BMC Genomics , vol.10 , pp. 243
    • Moccia, M.1    Oger-Desfeux, C.2    Marais, G.3    Widmer, A.4
  • 50
    • 0032200910 scopus 로고    scopus 로고
    • Functional genomics in plants
    • Bouchez D, Hofte H (1998) Functional genomics in plants. Plant Physiol 118:725-732 (Pubitemid 128652997)
    • (1998) Plant Physiology , vol.118 , Issue.3 , pp. 725-732
    • Bouchez, D.1    Hofte, H.2
  • 53
    • 0029360645 scopus 로고
    • Construction of a gene expression profile of a human fetal liver by single-pass cdna sequencing
    • Choi SS, Yun JW, Choi EK, Cho YG, Sung YC, Shin HS (1995) Construction of a gene expression profile of a human fetal liver by single-pass cDNA sequencing. Mamm Genome 6:653-657
    • (1995) Mamm Genome , vol.6 , pp. 653-657
    • Choi, S.S.1    Yun, J.W.2    Choi, E.K.3    Cho, Y.G.4    Sung, Y.C.5    Shin, H.S.6
  • 58
    • 34247379370 scopus 로고    scopus 로고
    • Genetic diversity and geographical dispersal in grapevine clones revealed by microsatellite markers
    • DOI 10.1139/G06-102
    • Moncada X, Pelsy F, Merdinoglu D, Hinrichsen P (2006) Genetic diversity and geographical dispersal in grapevine clones revealed by microsatellite markers. Genome 49:1459-1472 (Pubitemid 46640334)
    • (2006) Genome , vol.49 , Issue.11 , pp. 1459-1472
    • Moncada, X.1    Pelsy, F.2    Merdinoglu, D.3    Hinrichsen, P.4
  • 60
    • 34848884818 scopus 로고    scopus 로고
    • Microsatellite fingerprinting of homonymous grapevine (Vitis vinifera L.) varieties in neighboring regions of South-East Turkey
    • DOI 10.1016/j.scienta.2007.07.001, PII S0304423807002427
    • Karatas H, Degirmenci D, Velasco R, Vezzulli S, Bodur X, Agaoglu YS (2007) Microsatellite fingerprinting of homonymous grapevine (Vitis vinifera L.) varieties in neighboring regions of South-East Turkey. Sci Hortic 114:164-169 (Pubitemid 47496195)
    • (2007) Scientia Horticulturae , vol.114 , Issue.3 , pp. 164-169
    • Karatas, H.1    Degirmenci, D.2    Velasco, R.3    Vezzulli, S.4    Bodur, C.5    Agaoglu, Y.S.6
  • 61
    • 11344276529 scopus 로고    scopus 로고
    • Genic microsatellite markers in plants: Features and applications
    • DOI 10.1016/j.tibtech.2004.11.005, PII S0167779904003221
    • Varshney RK, Graner A, Sorrells ME (2005) Genic microsatellite markers in plants: features and applications. Trends Biotechnol 23:48-55 (Pubitemid 40075526)
    • (2005) Trends in Biotechnology , vol.23 , Issue.1 , pp. 48-55
    • Varshney, R.K.1    Graner, A.2    Sorrells, M.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.