메뉴 건너뛰기




Volumn 28, Issue 14, 2012, Pages 1935-1936

Codonlogo: A sequence logo-based viewer for codon patterns

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; AUTOMATED PATTERN RECOGNITION; BIOLOGY; CODON; COMPUTER LANGUAGE; COMPUTER PROGRAM; METHODOLOGY; NUCLEOTIDE SEQUENCE; POSITION WEIGHT MATRIX; SEQUENCE ALIGNMENT;

EID: 84864154211     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts295     Document Type: Article
Times cited : (8)

References (17)
  • 1
    • 0037139583 scopus 로고    scopus 로고
    • Recoding: translational bifurcations in gene expression
    • Baranov, P. V. et al. (2002) Recoding: translational bifurcations in gene expression. Gene, 286, 187-201.
    • (2002) Gene , vol.286 , pp. 187-201
    • Baranov, P.V.1
  • 2
    • 33747819880 scopus 로고    scopus 로고
    • CorreLogo: an online server for 3D sequence logos of RNA and DNA alignments
    • Bindewald, E. et al. (2006) CorreLogo: an online server for 3D sequence logos of RNA and DNA alignments. Nucleic Acids Res., 34, W405-W411.
    • (2006) Nucleic Acids Res , vol.34
    • Bindewald, E.1
  • 3
    • 75949108066 scopus 로고    scopus 로고
    • Galaxy: a web-based genome analysis tool for experimentalists
    • Chapter 19, Unit 19.10.1-19.10.21
    • Blankenberg, D. et al. (2010) Galaxy: a web-based genome analysis tool for experimentalists. Curr. Protoc. Mol. Biol., Chapter 19, Unit 19.10.1-19.10.21.
    • (2010) Curr. Protoc. Mol. Biol.
    • Blankenberg, D.1
  • 4
    • 48449084852 scopus 로고    scopus 로고
    • RNALogo: a new approach to display structural RNA alignment
    • Chang, T. H. et al. (2008) RNALogo: a new approach to display structural RNA alignment. Nucleic Acids Res., 36, W91-W96.
    • (2008) Nucleic Acids Res , vol.36
    • Chang, T.H.1
  • 5
    • 46449120581 scopus 로고    scopus 로고
    • Virus attenuation by genome-scale changes in codon pair bias
    • Coleman, J. R. et al. (2008) Virus attenuation by genome-scale changes in codon pair bias. Science, 320, 1784-1787.
    • (2008) Science , vol.320 , pp. 1784-1787
    • Coleman, J.R.1
  • 6
    • 2142738304 scopus 로고    scopus 로고
    • WebLogo: a sequence logo generator
    • Crooks, G. E. et al. (2004) WebLogo: a sequence logo generator. Genome Res., 14, 1188-1190.
    • (2004) Genome Res , vol.14 , pp. 1188-1190
    • Crooks, G.E.1
  • 7
    • 0027500136 scopus 로고
    • Ribosomal RNAsecondary structure: compensatory mutations and implications for phylogenetic analysis
    • Dixon, M. T. and Hillis, D. M. (1993) Ribosomal RNAsecondary structure: compensatory mutations and implications for phylogenetic analysis. Mol. Biol. Evol., 10, 256-267.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 256-267
    • Dixon, M.T.1    Hillis, D.M.2
  • 8
    • 47549097539 scopus 로고    scopus 로고
    • Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution
    • Drummond, D. A. and Wilke, C. O. (2008) Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution. Cell, 134, 341-352.
    • (2008) Cell , vol.134 , pp. 341-352
    • Drummond, D.A.1    Wilke, C.O.2
  • 9
    • 25844449770 scopus 로고    scopus 로고
    • Galaxy: a platform for interactive large-scale genome analysis
    • Giardine, B. et al. (2005) Galaxy: a platform for interactive large-scale genome analysis. Genome Res., 15, 1451-1455.
    • (2005) Genome Res , vol.15 , pp. 1451-1455
    • Giardine, B.1
  • 10
    • 77955801615 scopus 로고    scopus 로고
    • Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
    • Goecks, J. et al. (2010) Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol., 11, R86.
    • (2010) Genome Biol , vol.11
    • Goecks, J.1
  • 11
    • 52949147845 scopus 로고    scopus 로고
    • BLogo: a tool for visualization of bias in biological sequences
    • Li, W. et al. (2008) BLogo: a tool for visualization of bias in biological sequences. Bioinformatics, 24, 2254-2255.
    • (2008) Bioinformatics , vol.24 , pp. 2254-2255
    • Li, W.1
  • 12
    • 0842267214 scopus 로고    scopus 로고
    • Reprogrammed genetic decoding in cellular gene expression
    • Namy, O. et al. (2004) Reprogrammed genetic decoding in cellular gene expression. Mol. Cell, 13, 157-168.
    • (2004) Mol. Cell , vol.13 , pp. 157-168
    • Namy, O.1
  • 13
    • 0025008168 scopus 로고
    • Sequence logos: a new way to display consensus sequences
    • Schneider, T. D. and Stephens, R. M. (1990) Sequence logos: a new way to display consensus sequences. Nucleic Acids Res., 18, 6097-6100.
    • (1990) Nucleic Acids Res , vol.18 , pp. 6097-6100
    • Schneider, T.D.1    Stephens, R.M.2
  • 14
    • 0035999980 scopus 로고    scopus 로고
    • Compensation for nucleotide bias in a genome by representation as a discrete channel with noise
    • Schreiber, M. and Brown, C. (2002) Compensation for nucleotide bias in a genome by representation as a discrete channel with noise. Bioinformatics, 18, 507-512.
    • (2002) Bioinformatics , vol.18 , pp. 507-512
    • Schreiber, M.1    Brown, C.2
  • 16
    • 80155192426 scopus 로고    scopus 로고
    • A Pilot study of bacterial genes with disrupted ORFs reveals a surprising profusion of protein sequence recoding mediated by ribosomal frameshifting and transcriptional realignment
    • Sharma, V. et al. (2011) A Pilot study of bacterial genes with disrupted ORFs reveals a surprising profusion of protein sequence recoding mediated by ribosomal frameshifting and transcriptional realignment. Mol. Biol. Evol., 28, 3195-3211.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 3195-3211
    • Sharma, V.1
  • 17
    • 77951715627 scopus 로고    scopus 로고
    • An evolutionarily conserved mechanism for controlling the efficiency of protein translation
    • Tuller, T. et al. (2010) An evolutionarily conserved mechanism for controlling the efficiency of protein translation, Cell, 141, 344-354.
    • (2010) Cell , vol.141 , pp. 344-354
    • Tuller, T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.