-
1
-
-
0038392723
-
Half-genome human immunodeficiency virus type 1 constructs for rapid production of reporter viruses
-
Ali A, Jamieson BD, Yang OO. 2003. Half-genome human immunodeficiency virus type 1 constructs for rapid production of reporter viruses. J. Virol. Methods 110:137-142.
-
(2003)
J. Virol. Methods
, vol.110
, pp. 137-142
-
-
Ali, A.1
Jamieson, B.D.2
Yang, O.O.3
-
2
-
-
33644926105
-
A novel small reporter gene and HIV-1 fitness assay
-
Ali A, Yang OO. 2006. A novel small reporter gene and HIV-1 fitness assay. J. Virol. Methods 133:41- 47.
-
(2006)
J. Virol. Methods
, vol.133
, pp. 41-47
-
-
Ali, A.1
Yang, O.O.2
-
3
-
-
27144513224
-
Selective escape from CD8+ T-cell responses represents a major driving force of human immunodeficiency virus type 1 (HIV-1) sequence diversity and reveals constraints on HIV-1 evolution
-
Allen TM, et al. 2005. Selective escape from CD8+ T-cell responses represents a major driving force of human immunodeficiency virus type 1 (HIV-1) sequence diversity and reveals constraints on HIV-1 evolution. J. Virol. 79:13239 -13249.
-
(2005)
J. Virol.
, vol.79
, pp. 13239-13249
-
-
Allen, T.M.1
-
4
-
-
18744363385
-
HIV- 1 superinfection despite broad CD8_ T-cell responses containing replication of the primary virus
-
Altfeld M, et al. 2002. HIV-1 superinfection despite broad CD8_ T-cell responses containing replication of the primary virus. Nature 420:434- 439.
-
(2002)
Nature
, vol.420
, pp. 434-439
-
-
Altfeld, M.1
-
5
-
-
40149100955
-
Primary human immunodeficiency virus type 1 (HIV-1) infection during HIV-1 Gag vaccination
-
Balamurugan A, et al. 2008. Primary human immunodeficiency virus type 1 (HIV-1) infection during HIV-1 Gag vaccination. J. Virol. 82:2784- 2791.
-
(2008)
J. Virol.
, vol.82
, pp. 2784-2791
-
-
Balamurugan, A.1
-
6
-
-
16944365445
-
Antiviral pressure exerted by HIV-1-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus
-
Borrow P, et al. 1997. Antiviral pressure exerted by HIV-1-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus. Nat. Med. 3:205-211.
-
(1997)
Nat. Med.
, vol.3
, pp. 205-211
-
-
Borrow, P.1
-
7
-
-
62749167015
-
Reduced viral replication capacity of human immunodeficiency virus type 1 subtype C caused by cytotoxic-T-lymphocyte escape mutations in HLA-B57 epitopes of capsid protein
-
Boutwell CL, Rowley CF, Essex M. 2009. Reduced viral replication capacity of human immunodeficiency virus type 1 subtype C caused by cytotoxic-T-lymphocyte escape mutations in HLA-B57 epitopes of capsid protein. J. Virol. 83:2460 -2468.
-
(2009)
J. Virol.
, vol.83
, pp. 2460-2468
-
-
Boutwell, C.L.1
Rowley, C.F.2
Essex, M.3
-
8
-
-
0028952146
-
HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy
-
Coffin JM. 1995. HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy. Science 267:483- 489.
-
(1995)
Science
, vol.267
, pp. 483-489
-
-
Coffin, J.M.1
-
9
-
-
34547138161
-
Compensatory mutation partially restores fitness and delays reversion of escape mutation within the immunodominant HLA-B*5703-restricted Gag epitope in chronic human immunodeficiency virus type 1 infection
-
Crawford H, et al. 2007. Compensatory mutation partially restores fitness and delays reversion of escape mutation within the immunodominant HLA-B*5703-restricted Gag epitope in chronic human immunodeficiency virus type 1 infection. J. Virol. 81:8346-8351.
-
(2007)
J. Virol.
, vol.81
, pp. 8346-8351
-
-
Crawford, H.1
-
10
-
-
11144357869
-
Immune selection for altered antigen processing leads to cytotoxic T lymphocyte escape in chronic HIV-1 infection
-
Draenert R, et al. 2004. Immune selection for altered antigen processing leads to cytotoxic T lymphocyte escape in chronic HIV-1 infection. J. Exp. Med. 199:905-915.
-
(2004)
J. Exp. Med.
, vol.199
, pp. 905-915
-
-
Draenert, R.1
-
11
-
-
0000122573
-
PHYLIP-phylogeny inference package (version 3 2)
-
Felsenstein J. 1989. PHYLIP-phylogeny inference package (version 3.2). Cladistics 5:164 -166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
12
-
-
16944366524
-
Late escape from an immunodominant cytotoxic T-lymphocyte response associated with progression to AIDS
-
Goulder PJ, et al. 1997. Late escape from an immunodominant cytotoxic T-lymphocyte response associated with progression to AIDS. Nat. Med. 3:212-217.
-
(1997)
Nat. Med.
, vol.3
, pp. 212-217
-
-
Goulder, P.J.1
-
13
-
-
10744222966
-
Epitope escape mutation and decay of human immunodeficiency virus type 1-specific CTL responses
-
Jamieson BD, et al. 2003. Epitope escape mutation and decay of human immunodeficiency virus type 1-specific CTL responses. J. Immunol. 171: 5372-5379.
-
(2003)
J. Immunol.
, vol.171
, pp. 5372-5379
-
-
Jamieson, B.D.1
-
14
-
-
9244254245
-
Determinants of human immunodeficiency virus type 1 escape from the primary CD8+cytotoxic T lymphocyte response
-
Jones NA, et al. 2004. Determinants of human immunodeficiency virus type 1 escape from the primary CD8+cytotoxic T lymphocyte response. J. Exp. Med. 200:1243-1256.
-
(2004)
J. Exp. Med.
, vol.200
, pp. 1243-1256
-
-
Jones, N.A.1
-
15
-
-
0035808775
-
Clustered mutations in HIV-1 gag are consistently required for escape from HLA-B27-restricted cytotoxic T lymphocyte responses
-
Kelleher AD, et al. 2001. Clustered mutations in HIV-1 gag are consistently required for escape from HLA-B27-restricted cytotoxic T lymphocyte responses. J. Exp. Med. 193:375-386.
-
(2001)
J. Exp. Med.
, vol.193
, pp. 375-386
-
-
Kelleher, A.D.1
-
16
-
-
20744455635
-
Limited sequence evolution within persistently targeted CD8 epitopes in chronic human immunodeficiency virus type 1 infection
-
Koibuchi T, et al. 2005. Limited sequence evolution within persistently targeted CD8 epitopes in chronic human immunodeficiency virus type 1 infection. J. Virol. 79:8171- 8181.
-
(2005)
J. Virol.
, vol.79
, pp. 8171-8181
-
-
Koibuchi, T.1
-
17
-
-
20244373940
-
Transmission and accumulation of CTL escape variants drive negative associations between HIV polymorphisms and HLA
-
Leslie A, et al. 2005. Transmission and accumulation of CTL escape variants drive negative associations between HIV polymorphisms and HLA. J. Exp. Med. 201:891-902.
-
(2005)
J. Exp. Med.
, vol.201
, pp. 891-902
-
-
Leslie, A.1
-
18
-
-
33748919693
-
Selection on the human immunodeficiency virus type 1 proteome following primary infection
-
Liu Y, et al. 2006. Selection on the human immunodeficiency virus type 1 proteome following primary infection. J. Virol. 80:9519 -9529.
-
(2006)
J. Virol.
, vol.80
, pp. 9519-9529
-
-
Liu, Y.1
-
19
-
-
33645240933
-
Fitness cost of escape mutations in p24 Gag in association with control of human immunodeficiency virus type 1
-
Martinez-Picado J, et al. 2006. Fitness cost of escape mutations in p24 Gag in association with control of human immunodeficiency virus type 1. J. Virol. 80:3617-3623.
-
(2006)
J. Virol.
, vol.80
, pp. 3617-3623
-
-
Martinez-Picado, J.1
-
20
-
-
66149101542
-
HLA footprints on human immunodeficiency virus type 1 are associated with interclade polymorphisms and intraclade phylogenetic clustering
-
Matthews PC, et al. 2009. HLA footprints on human immunodeficiency virus type 1 are associated with interclade polymorphisms and intraclade phylogenetic clustering. J. Virol. 83:4605- 4615.
-
(2009)
J. Virol.
, vol.83
, pp. 4605-4615
-
-
Matthews, P.C.1
-
21
-
-
63149157476
-
HLA- associated viral mutations are common in human immunodeficiency virus type 1 elite controllers
-
Miura T, et al. 2009. HLA-associated viral mutations are common in human immunodeficiency virus type 1 elite controllers. J. Virol. 83:3407- 3412.
-
(2009)
J. Virol.
, vol.83
, pp. 3407-3412
-
-
Miura, T.1
-
22
-
-
0037165969
-
Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level
-
Moore CB, et al. 2002. Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level. Science 296:1439 -1443.
-
(2002)
Science
, vol.296
, pp. 1439-1443
-
-
Moore, C.B.1
-
23
-
-
0024658495
-
Variances of the average numbers of nucleotide substitutions within and between populations
-
Nei M, Jin L. 1989. Variances of the average numbers of nucleotide substitutions within and between populations. Mol. Biol. Evol. 6:290- 300.
-
(1989)
Mol. Biol. Evol.
, vol.6
, pp. 290-300
-
-
Nei, M.1
Jin, L.2
-
24
-
-
0025827529
-
Human immunodeficiency virus genetic variation that can escape cytotoxic T cell recognition
-
Phillips RE, et al. 1991. Human immunodeficiency virus genetic variation that can escape cytotoxic T cell recognition. Nature 354:453- 459.
-
(1991)
Nature
, vol.354
, pp. 453-459
-
-
Phillips, R.E.1
-
25
-
-
15844406550
-
HyPhy: hypothesis testing using phylogenies
-
Pond SL, Frost SD, Muse SV. 2005. HyPhy: hypothesis testing using phylogenies. Bioinformatics 21:676-679.
-
(2005)
Bioinformatics
, vol.21
, pp. 676-679
-
-
Pond, S.L.1
Frost, S.D.2
Muse, S.V.3
-
26
-
-
58149517692
-
Functional consequences of human immunodeficiency virus escape from an HLA-B*13-restricted CD8+T-cell epitope in p1 Gag protein
-
Prado JG, et al. 2009. Functional consequences of human immunodeficiency virus escape from an HLA-B*13-restricted CD8+T-cell epitope in p1 Gag protein. J. Virol. 83:1018 -1025.
-
(2009)
J. Virol.
, vol.83
, pp. 1018-1025
-
-
Prado, J.G.1
-
27
-
-
43949094512
-
Structural and functional constraints limit options for cytotoxic T-lymphocyte escape in the immunodominant HLA-B27-restricted epitope in human immunodeficiency virus type 1 capsid
-
Schneidewind A, et al. 2008. Structural and functional constraints limit options for cytotoxic T-lymphocyte escape in the immunodominant HLA-B27-restricted epitope in human immunodeficiency virus type 1 capsid. J. Virol. 82:5594 -5605.
-
(2008)
J. Virol.
, vol.82
, pp. 5594-5605
-
-
Schneidewind, A.1
-
28
-
-
84857959077
-
Variable fitness impact of HIV-1 escape mutations to cytotoxic T lymphocyte (CTL) response
-
doi:10.1371/journal.ppat.1000365
-
Troyer RM, et al. 2009. Variable fitness impact of HIV-1 escape mutations to cytotoxic T lymphocyte (CTL) response. PLoS Pathog. 5:e1000365. doi:10.1371/journal.ppat.1000365.
-
(2009)
PLoS Pathog
, vol.5
-
-
Troyer, R.M.1
-
29
-
-
0023224968
-
Bi- specific monoclonal antibodies: selective binding and complement fixation to cells that express two different surface antigens
-
Wong JT, Colvin RB. 1987. Bi-specific monoclonal antibodies: selective binding and complement fixation to cells that express two different surface antigens. J. Immunol. 139:1369 -1374.
-
(1987)
J. Immunol.
, vol.139
, pp. 1369-1374
-
-
Wong, J.T.1
Colvin, R.B.2
-
30
-
-
0026088887
-
Selective reduction and proliferation of the CD4+ and CD8+ T cell subsets with bispecific monoclonal antibodies: evidence for inter-T cell-mediated cytolysis
-
Wong JT, Colvin RB. 1991. Selective reduction and proliferation of the CD4+ and CD8+ T cell subsets with bispecific monoclonal antibodies: evidence for inter-T cell-mediated cytolysis. Clin. Immunol. Immunopathol. 58:236 -250.
-
(1991)
Clin. Immunol. Immunopathol.
, vol.58
, pp. 236-250
-
-
Wong, J.T.1
Colvin, R.B.2
-
31
-
-
19944426838
-
Human immunodeficiency virus type 1 clade B superinfection: evidence for differential immune containment of distinct clade B strains
-
Yang OO, et al. 2005. Human immunodeficiency virus type 1 clade B superinfection: evidence for differential immune containment of distinct clade B strains. J. Virol. 79:860-868.
-
(2005)
J. Virol.
, vol.79
, pp. 860-868
-
-
Yang, O.O.1
-
32
-
-
79953736214
-
Increasing CTL targeting of conserved sequences during early HIV-1 infection is correlated to decreasing viremia
-
Yang OO, Daar ES, Ng HL, Shih R, Jamieson BD. 2011. Increasing CTL targeting of conserved sequences during early HIV-1 infection is correlated to decreasing viremia. AIDS Res. Hum. Retroviruses 27:391-398.
-
(2011)
AIDS Res. Hum. Retroviruses
, vol.27
, pp. 391-398
-
-
Yang, O.O.1
Daar, E.S.2
Ng, H.L.3
Shih, R.4
Jamieson, B.D.5
-
33
-
-
0030997137
-
Suppression of human immunodeficiency virus type 1 replication by CD8+ cells: evidence for HLA class I-restricted triggering of cytolytic and noncytolytic mechanisms
-
Yang OO, et al. 1997. Suppression of human immunodeficiency virus type 1 replication by CD8+ cells: evidence for HLA class I-restricted triggering of cytolytic and noncytolytic mechanisms. J. Virol. 71:3120 -3128.
-
(1997)
J. Virol.
, vol.71
, pp. 3120-3128
-
-
Yang, O.O.1
-
34
-
-
0038190811
-
Determinant of HIV-1 mutational escape from cytotoxic T lymphocytes
-
Yang OO, et al. 2003. Determinant of HIV-1 mutational escape from cytotoxic T lymphocytes. J. Exp. Med. 197:1365-1375.
-
(2003)
J. Exp. Med.
, vol.197
, pp. 1365-1375
-
-
Yang, O.O.1
-
35
-
-
0030881697
-
Lysis of HIV-1-infected cells and inhibition of viral replication by universal receptor T cells
-
Yang OO, et al. 1997. Lysis of HIV-1-infected cells and inhibition of viral replication by universal receptor T cells. Proc. Natl. Acad. Sci. U. S. A. 94:11478 -11483.
-
(1997)
Proc. Natl. Acad. Sci. U. S. A.
, vol.94
, pp. 11478-11483
-
-
Yang, O.O.1
-
36
-
-
0030683599
-
PAML: a program package for phylogenetic analysis by maximum likelihood
-
Yang Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13:555-556.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
37
-
-
0034097381
-
Codonsubstitution models for heterogeneous selection pressure at amino acid sites
-
Yang Z, Nielsen R, Goldman N, Pedersen AM. 2000. Codonsubstitution models for heterogeneous selection pressure at amino acid sites. Genetics 155:431- 449.
-
(2000)
Genetics
, vol.155
, pp. 431-449
-
-
Yang, Z.1
Nielsen, R.2
Goldman, N.3
Pedersen, A.M.4
-
38
-
-
9144259999
-
Impaired processing and presentation of cytotoxic-T-lymphocyte (CTL) epitopes are major escape mechanisms from CTL immune pressure in human immunodeficiency virus type 1 infection
-
Yokomaku Y, et al. 2004. Impaired processing and presentation of cytotoxic-T-lymphocyte (CTL) epitopes are major escape mechanisms from CTL immune pressure in human immunodeficiency virus type 1 infection. J. Virol. 78:1324 -1332.
-
(2004)
J. Virol.
, vol.78
, pp. 1324-1332
-
-
Yokomaku, Y.1
|