Temporal transcription of the lactococcal temperate phage TP901-1 and DNA sequence of the early promoter region

Microbiology

Volumn 144, Issue 8, 1998, Pages 2203-2215

  Madsen, Peter L ^a,b   Hammer, Karin ^a  

^a TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^b EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH AND HUMAN DEVELOPMENT   (United States)

Author keywords

Early promoter; Lactococcal bacteriophage; mRNA analysis; One step growth; Temporal transcription

Indexed keywords

ARTICLE; BACTERIOPHAGE; DNA SEQUENCE; GENETIC TRANSCRIPTION; LACTOCOCCUS; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; SEQUENCE ANALYSIS;

EID: 0031708945     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/00221287-144-8-2203     Document Type: Article

References (45)

1. Arendt, E. K., Daly, C., Fitzgerald, G. F. & van de Guchte, M. (1994). Molecular characterization of lactococcal bacteriophage Tuc2009 and identification and analysis of genes encoding lysin, a putative holin, and two structural proteins. Appl Environ Microbiol 60, 1875-1883.
2. Båga, M., Göransson, M., Normark, S. & Uhlin, B. E. (1988). Processed mRNA with differential stability in the regulation of E. coli pilin gene expression. Cell 52, 197-206.
3. Beresford, T. P. J., Ward, L. J. H. & Jarvis, A. W. (1993). Temporally regulated transcriptional expression of the genomes of lactococcal hacteriophages c2 and sk1. Appl Environ Microbiol 59, 3708-3712.
4. Birkeland, N. K. (1994). Cloning, molecular characterization, and expression of the genes encoding the lytic functions of lactococcal bacteriophage øLC3 : a dual lysis system of modular design. Can J Microbiol 40, 658-665.
5. Borodovsky, M. & McIninch, J. (1993). Genmark: parallel gene recognition for both DNA strands. Comput Chem 17, 123-133.
6. Boyce, J. D., Davidson, B. E. & Hillier, A. J. (1995a). Identification of prophage genes expressed in lysogens of the Lactococcus lactis bacteriophage BK5-T. Appl Environ Microbiol 61, 4099-4104.
7. Boyce, J. D., Davidson, B. E. & Hillier, A. J. (199Sb). Spontaneous deletion mutants of the Lactococcus lactis temperate bacteriophage BK5-T and localization of the BK5-T attP site. Appl Environ Microbiol 61, 4105-4109.
8. Braun, V., Jr, Hertwig, S., Neve, H., Geis, A. & Teuber, M. (1989). Taxonomic differentiation of bacteriophages of Lactococcus lactis by electron microscopy, DNA-DNA hybridization, and protein profiles. J Gen Microbiol 135, 2551-2560.
9. Bruttin, A., Desiere, F., Lucchini, S., Foley, S. & Brüssow, H. (1997). Characterization of the lysogeny DNA module from the temperate Streptococcus thermophilus bacteriophage phi Sfi21. Virology 233, 136-148.
10. Chandry, P. S., Moore, S. C., Boyce, J. D., Davidson, B. E. & Hillier, A. J. (1997). Analysis of the DNA sequence, gene expression, origin of replication and modular structure of the Lactococcus lactis lytic bacteriophage sk1. Mol Microbiol 26, 49-64.
11. Christiansen, B., Johnsen, M. G., Stenby, E., Vogensen, F. K. & Hammer, K. (1994). Characterization of the lactococcal temperate phage TP901-1 and its site-specific integration. J Bacteriol 176, 1069-1076.
12. Christiansen, B., Brøndsted, L., Vogensen, F. K. & Hammer, K. (1996). A resolvase-like protein is required for the site-specific integration of the temperate lactococcal bacteriophage TP901-1. J Bacteriol 178, 5164-5173.
13. Daly, C., Fitzgerald, G. F. & Davis, R. (1996). Biotechnology of lactic acid bacteria with special reference to bacteriophage resistance. Antonie Leeuwenhoek 70, 99-110.
14. Devereux, J., Haeberli, P. & Smithies, O. (1984). A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12, 387-395.
15. Fraser, C. M., Gocayne, J. D., White, O. & 26 other authors (1995). The minimal gene complement of Mycoplasma genitalium. Science 270, 397-403.
16. van de Guchte, M., Daly, C., Fitzgerald, G. F. & Arendt, E. K. (1994a). Identification of int and attP on the genome of lactococcal bacteriophage Tuc2009 and their use for site-specific plasmid integration in the chromosome of Tuc2009-resistant Lactococcus lactis MG1363. Appl Environ Microbiol 60, 2324-2329.
17. van de Guchte, M., Daly, C., Fitzgerald, G. F. & Arendt, E. K. (1994b). Identification of the putative repressor-encoding gene cI of the temperate lactococcal bacteriophage Tuc2009. Gene 144, 93-95.
18. Herskowitz, I. & Hagen, D. (1980). The lysis-Iysogeny decision of phage lambda: explicit programming and responsiveness. Annu Rev Genet 14, 399-445.
19. Hill, C., Miller, L. A. & Klaenhammer, T. R. (1990). Cloning, expression, and sequence determination of a bacteriophage fragment encoding bacteriophage resistance in Lactococcus lactis. J Bacteriol 172, 6419-6426.
20. Himmelreich, R., Hilbert, H., Plagens, H., Pirkl, E., Li, B.C. & Herrmann, R. (1996). Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae. Nucleic Acids Res 24, 4420-4449.
21. Jarvis, A. W., Fitzgerald, G. F., Mata, M., Mercenier, A., Neve. H., Powel, I. B., Ronda. C., Saxelin, M. & Teuber, M. (1991). Species and tvpe phages of lactococcal bacteriophages. Intervirology 32, 2-9.
22. Jensen, P. R. & Hammer, K. (1993). Minimal requirements for exponential growth of Lactococcus lactis. Appl Environ Microbiol 59, 4363-4366.
23. Johnsen, M. G., Neve. H., Vogensen, F. K. & Hammer, K. (1995). Virion positions and relationships of lactococcal temperate bacteriophage TP901-1 proteins. Virology 212, 595-606.
24. Johnsen, M. G., Appel, K. F., Madsen, P. L., Vogensen, F. K., Hammer, K. & Arnau, J. (1996). A genomic region of lactococcal temperate phage TP901-1 encoding major virion proteins. Virology 218, 306-315.
25. Keogh, B. P. (1973). Adsorption, latent period and burst size of phages of some strains of lactic streptococci. J Dairy Res 40, 303-309.
26. Klaenhammer, T. R. (1984). Interactions of bacteriophages with lactic streptococci. Adv Appl Microbiol 30, 1-29.
27. Koch. B., Christiansen, B., Evison, T., Vogensen, F. K. & Hammer, K. (1997). Construction of specific erythromycin resistance mutations in the temperate lactococcal bacteriophage TP901-1 and their use in studies of phage biology. Appl Environ Microbiol 63, 2439-2441.
28. Lillehaug, D. & Birkeland, N. K. (1993). Characterization of genetic elements required for site-specific integration of the temperate lactococcal bacteriophage øLC3 and construction of integration-negative øLC3 mutants. J Bacteriol 175, 1745-1755.
29. Lillehaug, D., Lindqvist, B. H. & Birkeland, N. K. (1991). Characterization of øLC3, a Lactococcus lactis subsp. cremoris temperate bacteriophage with cohesive single-stranded DNA ends. Appl Environ Microbiol 57, 3206-3211.
30. Lubbers, M. W., Waterfield, N. R., Beresford, T. P., Le Page, R. W. & Jarvis, A. W. (1995). Sequencing and analysis of the prolate-headed lactococcal bacteriophage c2 genome and identification of the structural genes. Appl Environ Microbiol 61, 4348-4356.
31. Ludwig, W., Seewaldt, E., Kilpper-Bälz, R., Schleifer, K. H., Magrum, L., Woese, C R., Fox, G. E. & Stackebrandt, E. (1985). The phylogenetic position of Streptococcus and Enterococcus. J Gen Microbiol 131, 543-551.
32. Madsen, P. L. (1996). Transcription of the lactococcal temperate phage TP901-1. PhD thesis, University of Copenhagen.
33. Moineau, S., Fortier, J., Ackermann, H. W. & Pandian, S. (1992). Characterization of lactococcal bacteriophages from Quebec cheese plants. Can J Microbiol 38, 875-882.
34. Nauta, A., van Sinderen. D., Karsens. H., Smit, E., Venema. G. & Kok, J. (1996). Inducible gene expression mediated by a repressor-operator system isolated from Lactococcus lactis bacteriophage r1t. Mol Microbiol 19, 1331-1341.
35. O'Sullivan, D. J., Hill, C. & Klaenhammer, T. R. (1993). Effect of increasing the copy number of bacteriophage origins of replication, in trans, on incoming-phage proliferation. Appl Environ Microbiol 59, 2449-2456.
36. O'Sullivan, D. J., Walker, S. A., West, S. G. & Klaenhammer, T. R. (1996). Development of an expression strategy using a lytic phage to trigger explosive plasmid amplification and gene expression. Bio/Technology 14, 82-87.
37. Pedré, X., Weise, F., Chai, S., Lüder, G. & Alonso, J. C. (1994). Analysis of cis and trans acting elements required for the initiation of DNA replication in the Bacillus subtilis bacteriophage SPP1. J Mol Biol 236, 1324-1340.
38. Powell, I. B., Tulloch. D. L., Hillier. A. J. & Davidson, B. E. (1992). Phage DNA synthesis and host DNA degradation in the life cycle of Lactococcus lactis bacteriophage c6A. J Gen Microbiol 138, 945-950.
39. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
40. Sanders, M. E. (1987). Bacteriophages of industrial importance. In Phage Ecology, pp. 211-244. Edited by S. M. Goyal, C. P. Gerba & G. Bitton. New York : Wiley Interscience.
41. Sanger, F., Nicklen, S. & Coulson, A. R. (1977). DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci 74, 5463-5467.
42. Schouler, C., Ehrlich, S. D. & Chopin, M.-C. (1994). Sequence and organization of the lactococcal prolate-headed bIL67 phage genome. Microbiology 140, 3061-3069.
43. Shearman, C., Underwood, H., Jury, K. & Gasson, M. (1989). Cloning and DNA sequence analysis of a Lactococcus bacteriophage lysin gene. Mol Gen Genet 218, 214-221.
44. van Sinderen, D., Karsens, H., Kok, J., Terpstra, P., Ruiters, M. H., Venema, G. & Nauta, A. (1996). Sequence analysis and molecular characterization of the temperate lactococcal bacteriophage r1t. Mol Microbiol 19, 1343-1355.
45. Terzaghi, B. E. & Sandine, W. E. (1975). Improved medium for lactic streptococci and their bacteriophages. Appl Microbiol 29, 807-813.