Construction of whole genome radiation hybrid panels and map of chromosome 5A of wheat using asymmetric somatic hybridization

PLoS ONE

Volumn 7, Issue 7, 2012, Pages

  Zhou, Chuanen ^a,b   Dong, Wei ^a   Han, Lu ^a,c   Wei, Jiajie ^a,d   Jia, Li ^a   Tan, Yang ^b   Zhi, Daying ^a   Wang, Zeng Yu ^b   Xia, Guangmin ^a  

^a SHANDONG UNIVERSITY   (China)

^b PLANT BIOLOGY DIVISION   (United States)

^c UNIVERSITY OF JINAN   (China)

^d TEXAS A AND M UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BUPLEURUM; BUPLEURUM SCORZONERIFOLIUM; CELL CLONING; CELL HYBRIDIZATION; CHROMOSOME 5; CHROMOSOME BREAKAGE; CHROMOSOME DELETION; CHROMOSOME MAP; EXPRESSED SEQUENCE TAG; GAMMA RADIATION; MICROSATELLITE MARKER; NONHUMAN; PLANT CHROMOSOME; PLANT GENOME; PROTOPLAST; RADIATION HYBRID MAPPING; SIMPLE SEQUENCE REPEAT; TRITICUM AESTIVUM; ULTRAVIOLET RADIATION; WHOLE GENOME RADIATION HYBRID MAPPING;

BUPLEURUM; CELL CULTURE TECHNIQUES; CELL FUSION; CHROMOSOME BREAKAGE; CHROMOSOMES, PLANT; CLONING, MOLECULAR; GENE ORDER; GENOME, PLANT; HYBRIDIZATION, GENETIC; PHYSICAL CHROMOSOME MAPPING; PROTOPLASTS; TRITICUM;

BUPLEURUM SCORZONERIFOLIUM; TRITICUM AESTIVUM;

EID: 84864000781     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0040214     Document Type: Article

References (54)

1. Endo TR, Gill BS, (1996) The deletion stocks of common wheat. Journal of Heredity 87: 295-307.
2. Sandhu D, Gill KS, (2002) Gene-containing regions of wheat and the other grass genomes. Plant Physiol 128: 803-811.
3. Erayman M, Sandhu D, Sidhu D, Dilbirligi M, Baenziger PS, et al. (2004) Demarcating the gene-rich regions of the wheat genome. Nucleic Acids Resarch 32: 3546-3565.
4. Masoudi-Nejad A, Nasuda S, Bihoreau MT, Waugh R, Endo TR, (2005) An alternative to radiation hybrid mapping for large-scale genome analysis in barley. Mol Gen Genet 274: 589-594.
5. Kalavacharla V, Hossain K, Riera-Lizarazu O, Gu Y, Vales MI, et al. (2009) Radiation hybrid mapping in crop plants. Advances in Agronomy 12: 201-222.
6. Fleury D, Luo MC, Dvorak J, Ramsay L, Gill BS, et al. (2010) Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS. BMC Genomics 11: 382.
7. Paux E, Sourdille P, Salse J, Saintenac C, Choulet F, et al. (2008) A physical map of the 1-gigabase bread wheat chromosome 3B. Science 322: 101-104.
8. Luo MC, Ma Y, You FM, Anderson OD, Kopecky D, et al. (2010) Feasibility of physical map construction from fingerprinted bacterial artificial chromosome libraries of polyploid plant species. BMC Genomics 11: 122.
9. Qi LL, Echalier B, Chao S, Lazo GR, Butler GE, et al. (2004) A chromosome bin map of 16,000 expressed sequence tag loci and distribution of genes among the three genomes of polyploid wheat. Genetics 168: 701-712.
10. Kalavacharla V, Hossain K, Gu Y, Riera-Lizarazu O, Vales MI, et al. (2006) High-resolution radiation hybrid map of wheat chromosome 1D. Genetics 173: 1089-1099.
11. Riera-Lizarazu O, Vales MI, Kianian SF, (2008) Radiation hybrid (RH) and HAPPY mapping in plants. Cytogenet Genome Res 120: 233-240.
12. Cox DR, Burmeister M, Price ER, Kim S, Myers RM, (1990) Radiation hybrid mapping: a somatic cell genetic method for constructing high-resolution maps of mammalian chromosomes. Science 250: 245-250.
13. Goss SJ, Harris H, (1975) New method for mapping genes in human chromosomes. Nature 255: 680-684.
14. Gyapay G, Schmitt K, Fizames C, Jones H, Vega-Czarny N, et al. (1996) A radiation hybrid map of the human genome. Hum Mol Genet 5: 339-346.
15. Schuler GD, Boguski MS, Stewart EA, Stein LD, Gyapay G, et al. (1996) A gene map of the human genome. Science 274: 540-546.
16. Walter MA, Spillett DJ, Thomas P, Weissenbach J, Goodfellow PN, (1994) A method for constructing radiation hybrid maps of whole genomes. Nat Genet 7: 22-28.
17. Guyon R, Senger F, Rakotomanga M, Sadequi N, Volckaert FA, et al. (2010) A radiation hybrid map of the European sea bass (Dicentrarchus labrax) based on 1581 markers: Synteny analysis with model fish genomes. Genomics 96: 228-238.
18. Park CC, Ahn S, Bloom JS, Lin A, Wang RT, et al. (2008) Fine mapping of regulatory loci for mammalian gene expression using radiation hybrids. Nat Genet 40: 421-429.
19. McCarthy LC, Terrett J, Davis ME, Knights CJ, Smith AL, et al. (1997) A first-generation whole genome-radiation hybrid map spanning the mouse genome. Genome Res 7: 1153-1161.
20. Watanabe TK, Bihoreau MT, McCarthy LC, Kiguwa SL, Hishigaki H, et al. (1999) A radiation hybrid map of the rat genome containing 5,255 markers. Nat Genet 22: 27-36.
21. Riera-Lizarazu O, Vales MI, Ananiev EV, Rines HW, Phillips RL, (2000) Production and characterization of maize chromosome 9 radiation hybrids derived from an oat-maize addition line. Genetics 156: 327-339.
22. Wardrop J, Fuller J, Powell W, Machray GC, (2004) Exploiting plant somatic radiation hybrids for physical mapping of expressed sequence tags. Theor Appl Genet 108: 343-348.
23. Wardrop J, Snape J, Powell W, Machray GC, (2002) Constructing plant radiation hybrid panels. Plant Journal 31: 223-228.
24. Gao W, Chen ZJ, Yu JZ, Kohel RJ, Womack JE, et al. (2006) Wide-cross whole-genome radiation hybrid mapping of the cotton (Gossypium barbadense L.) genome. Mol Gen Genet 275: 105-113.
25. Gao W, Chen ZJ, Yu JZ, Raska D, Kohel RJ, et al. (2004) Wide-cross whole-genome radiation hybrid mapping of cotton (Gossypium hirsutum L.). Genetics 167: 1317-1329.
26. Hossain KG, Kalavacharla V, Lazo GR, Hegstad J, Wentz MJ, et al. (2004) A chromosome bin map of 2148 expressed sequence tag loci of wheat homoeologous group 7. Genetics 168: 687-699.
27. Xia G, Xiang F, Zhou A, Wang H, Chen H, (2003) Asymmetric somatic hybridization between wheat (Triticum aestivum L.) and Agropyron elongatum (Host) Nevishi. Theor Appl Genet 107: 299-305.
28. Xia G, (2009) Progress of chromosome engineering mediated by asymmetric somatic hybridization. J Genet Genomics 36: 547-556.
29. Bate GW, Hasenkampf CA, Contolini CL, Piastuch WC, (1987) Asymmetric hybridization in Nicotiana by fusion of irradiated protoplasts. Theor Appl Genet 74: 718-726.
30. Forsberg J, Dixelius C, Lagercrantz U, Glimelius K, (1998) UV dose-dependent DNA elimilation in asymmetric somatic hybrids between Brassica napus and Arabidopsis thaliana. Plant Science 131: 65-76.
31. Forsberg J, Lagercrantz U, Glimelius K, (1998) Comparison of UV light, X-ray and restriction enzyme treatment as tools in production of asymmetric somatic hybrids between Brassica napus and Arabidopsis thaliana. Theor Appl Genet 96: 1178-1185.
32. Ramulu KS, Dijkhuis P, Verhoeven HA, Famelaer I, Blaas J, (1992) Microprotoplast isolation, enrichment and fusion for partial genome transfer in plants. Physiologia Plantarum 85: 315-318.
33. Hinnisdaels S, Bariller L, Mouras A, Sidorov V, Del-Favero J, et al. (1991) Highly asymmetric intergeneric nuclear hybrids between Nicotiana and Petunia: evidence for recombination and translocation events in somatic hybrid plants after 'gamma-fusion'. Theor Appl Genet 82: 609-614.
34. Zubko K, Zubko I, Gleba Y, (2002) Self-fertile cybrids Nicotiana tabacum (+ Hyoscyamus aureus) with a nucleo-plastome incompatibility. Theor Appl Genet 105: 822-828.
35. Vlahova M, Hinnisdaels S, Frulleux F, Claeys M, Atanassov A, et al. (1997) UV irradiation as a tool for obtaining asymmetric somatic hybrids between Nicotiana plumbaginifolia and Lycoperdicon esculentum. Theor Appl Genet 94: 184-191.
36. Xia GM, Li ZY, Guo GQ, Chen HM, (1992) Direct somatic embryogenesis and plant regeneration from protoplasts of Bupleurum scorzonerifolium Wild. Plant Cell Reports 11: 155-158.
37. Wang MQ, Xia GM, Peng ZY, (2005) High UV-tolerance with introgression hybrid formation of Bupleurum scorzonerifolium Willd Plant Science 168: 593-600.
38. Zhou C, Xia G, Zhi D, Chen Y, (2006) Genetic characterization of asymmetric somatic hybrids between Bupleurum scorzonerifolium Willd and Triticum aestivum L.: potential application to the study of the wheat genome. Planta 223: 714-724.
39. Wang MQ, Zhao JS, Peng ZY, Guo W, Wang Y, et al. (2008) Chromosomes are eliminated in the symmetric fusion between Arabidopsis thaliana L. and Bupleurum scorzonerifolium. Plant Cell, Tissue and Organ Culture 92: 121-130.
40. Xia GM, Chen HM, (1996) Plant regeneration from intergeneric somatic hybridization between Trticum aestivum L and Leymus chinensis (Trin) Tzvel. Plant Science 120: 197-203.
41. Zhou AF, Xia GM, Chen HM, Hu H, (2001) Analysis of chromosomal and organellar DNA of somatic hybrids between Triticum aestiuvm L.and Haynaldia villosa Schru. Mol Gen Genet 265: 387-393.
42. Panaud O, Chen X, McCouch SR, (1996) Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L.). Mol Gen Genet 252: 597-607.
43. Breseghello F, Sorrells ME, (2006) Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics 172: 1165-1177.
44. Gegas VC, Nazari A, Griffiths S, Simmonds J, Fish L, et al. (2010) A genetic framework for grain size and shape variation in wheat. Plant Cell 22: 1046-1056.
45. Gill BS, Friebe B, Endo TR, (1991) Standard karyotype and nomenclature system for description of chromosome bands and structural aberrations in wheat (Triticum aestivum). Genome 34: 830-839.
46. Arumuganathan K, Earle ED, (1991) Nuclear DNA content of some important plant species. Plant Molecular Biology Reporter 9: 208-218.
47. Sourdille P, Singh S, Cadalen T, Brown-Guedira GL, Gay G, et al. (2004) Microsatellite-based deletion bin system for the establishment of genetic-physical map relationships in wheat (Triticum aestivum L.). Functional & integrative genomics 4: 12-25.
48. Vitulo N, Albiero A, Forcato C, Campagna D, Dal Pero F, et al. (2011) First survey of the wheat chromosome 5A composition through a next generation sequencing approach. PloS one 6: e26421.
49. De Filippis L, Hoffmann E, Hampp R, (1996) Identification of somatic hybrids of tobacco generated by electrofusion and culture of protoplasts using RAPD-PCR Plant Science 121: 39-46.
50. Hossain KG, Riera-Lizarazu O, Kalavacharla V, Vales MI, Maan SS, et al. (2004) Radiation hybrid mapping of the species cytoplasm-specific (scsae) gene in wheat. Genetics 168: 415-423.
51. Ananiev EV, Riera-Lizarazu O, Rines HW, Phillips RL, (1997) Oat-maize chromosome addition lines: a new system for mapping the maize genome. Proc Natl Acad Sci U S A 94: 3524-3529.
52. Stewart EA, Cox DR, (1997) Radiation hybrid mapping. In: Dear PH, editors. pp. 72-93 editor. Genome Mapping. New York: Oxford University Press.
53. Jones HB, (1996) Hybrid selection as a method of increasing mapping power for radiation hybrids. Genome Res 6: 761-769.
54. Linkiewicz AM, Qi LL, Gill BS, Ratnasiri A, Echalier B, et al. (2004) A 2500-locus bin map of wheat homoeologous group 5 provides insights on gene distribution and colinearity with rice. Genetics 168: 665-676.