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Volumn 38, Issue 2, 2012, Pages 317-329

Improved readout precision of the bicoid morphogen gradient by early decoding

Author keywords

Bicoid; Development; Drosophila; Morphogen; Noise; Stochastic simulation

Indexed keywords

DNA; MORPHOGEN; TRANSCRIPTION FACTOR;

EID: 84863875681     PISSN: 00920606     EISSN: 15730689     Source Type: Journal    
DOI: 10.1007/s10867-011-9250-8     Document Type: Article
Times cited : (11)

References (39)
  • 1
    • 0023679744 scopus 로고
    • The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner
    • Driever, W., Nusslein-Volhard, C.: The bicoid protein determines position in the Drosophila embryo in a concentration-dependent manner. Cell 54, 95-104 (1988)
    • (1988) Cell , vol.54 , pp. 95-104
    • Driever, W.1    Nusslein-Volhard, C.2
  • 2
    • 0024323615 scopus 로고
    • Determination of spatial domains of zygotic gene expression in the Drosophila embryo by the affinity of binding sites for the bicoid morphogen
    • Driever, W., Thoma, G., Nusslein-Volhard, C.: Determination of spatial domains of zygotic gene expression in the Drosophila embryo by the affinity of binding sites for the bicoid morphogen. Nature 340, 363-367 (1989)
    • (1989) Nature , vol.340 , pp. 363-367
    • Driever, W.1    Thoma, G.2    Nusslein-Volhard, C.3
  • 3
    • 0024380401 scopus 로고
    • The gradient morphogen bicoid is a concentration-dependent transcriptional activator
    • Struhl, G., Struhl, K., Macdonald, P.M.: The gradient morphogen bicoid is a concentration-dependent transcriptional activator. Cell 57, 1259-1273 (1989)
    • (1989) Cell , vol.57 , pp. 1259-1273
    • Struhl, G.1    Struhl, K.2    Macdonald, P.M.3
  • 4
    • 0032531831 scopus 로고    scopus 로고
    • Cooperative DNA-binding by Bicoid provides a mechanism for threshold-dependent gene activation in the Drosophila embryo
    • Burz, D.S., Rivera-Pomar, R., Jackle, H., Hanes, S.D.: Cooperative DNA-binding by Bicoid provides a mechanism for threshold-dependent gene activation in the Drosophila embryo. EMBO J. 17, 5998-6009 (1998)
    • (1998) EMBO J. , vol.17 , pp. 5998-6009
    • Burz, D.S.1    Rivera-Pomar, R.2    Jackle, H.3    Hanes, S.D.4
  • 6
    • 0035847110 scopus 로고    scopus 로고
    • Isolation of mutations that disrupt cooperative DNA binding by the Drosophila bicoid protein
    • Burz, D.S., Hanes, S.D.: Isolation of mutations that disrupt cooperative DNA binding by the Drosophila bicoid protein. J. Mol. Biol. 305, 219-230 (2001)
    • (2001) J. Mol. Biol. , vol.305 , pp. 219-230
    • Burz, D.S.1    Hanes, S.D.2
  • 7
    • 0029917071 scopus 로고    scopus 로고
    • The Drosophila morphogenetic protein Bicoid binds DNA cooperatively
    • Ma, X., Yuan, D., Diepold, K., Scarborough, T., Ma, J.: The Drosophila morphogenetic protein Bicoid binds DNA cooperatively. Development 122, 1195-1206 (1996)
    • (1996) Development , vol.122 , pp. 1195-1206
    • Ma, X.1    Yuan, D.2    Diepold, K.3    Scarborough, T.4    Ma, J.5
  • 8
    • 0029787694 scopus 로고    scopus 로고
    • Sequences outside the homeodomain of bicoid are required for protein-protein interaction
    • Yuan, D., Ma, X., Ma, J.: Sequences outside the homeodomain of bicoid are required for protein-protein interaction. J. Biol. Chem. 271, 21660-21665 (1996)
    • (1996) J. Biol. Chem. , vol.271 , pp. 21660-21665
    • Yuan, D.1    Ma, X.2    Ma, J.3
  • 9
    • 0026547230 scopus 로고
    • The giant gene of Drosophila encodes a b-ZIP DNA-binding protein that regulates the expression of other segmentation gap genes
    • Capovilla, M., Eldon, E.D., Pirrotta, V.: The giant gene of Drosophila encodes a b-ZIP DNA-binding protein that regulates the expression of other segmentation gap genes. Development 114, 99-112 (1992)
    • (1992) Development , vol.114 , pp. 99-112
    • Capovilla, M.1    Eldon, E.D.2    Pirrotta, V.3
  • 10
    • 0026062340 scopus 로고
    • Interactions of the Drosophila gap gene giant with maternal and zygotic patternforming genes
    • Eldon, E.D., Pirrotta, V.: Interactions of the Drosophila gap gene giant with maternal and zygotic patternforming genes. Development 111, 367-378 (1991)
    • (1991) Development , vol.111 , pp. 367-378
    • Eldon, E.D.1    Pirrotta, V.2
  • 11
    • 0024307220 scopus 로고
    • Analysis of maternal effect mutant combinations elucidates regulation and function of the overlap of hunchback and Krüppel gene expression in the Drosophila blastoderm embryo
    • Gaul, U., Jackle, H.: Analysis of maternal effect mutant combinations elucidates regulation and function of the overlap of hunchback and Krüppel gene expression in the Drosophila blastoderm embryo. Development 107, 651-662 (1989)
    • (1989) Development , vol.107 , pp. 651-662
    • Gaul, U.1    Jackle, H.2
  • 12
    • 0026548857 scopus 로고
    • Competition for overlapping sites in the regulatory region of the Drosophila gene Krüppel
    • Hoch, M., Gerwin, N., Taubert, H., Jackle, H.: Competition for overlapping sites in the regulatory region of the Drosophila gene Krüppel. Science 256, 94-97 (1992)
    • (1992) Science , vol.256 , pp. 94-97
    • Hoch, M.1    Gerwin, N.2    Taubert, H.3    Jackle, H.4
  • 13
    • 0025353654 scopus 로고
    • Cis-acting control elements for Krüppel expression in the Drosophila embryo
    • Hoch, M., Schroder, C., Seifert, E., Jackle, H.: Cis-acting control elements for Krüppel expression in the Drosophila embryo. EMBO J. 9, 2587-2595 (1990)
    • (1990) EMBO J. , vol.9 , pp. 2587-2595
    • Hoch, M.1    Schroder, C.2    Seifert, E.3    Jackle, H.4
  • 14
    • 0025328332 scopus 로고
    • A morphogenetic gradient of hunchback protein organizes the expression of the gap genes Krüppel and knirps in the early Drosophila embryo
    • Hulskamp, M., Pfeifle, C., Tautz, D.: A morphogenetic gradient of hunchback protein organizes the expression of the gap genes Krüppel and knirps in the early Drosophila embryo. Nature 346, 577-580 (1990)
    • (1990) Nature , vol.346 , pp. 577-580
    • Hulskamp, M.1    Pfeifle, C.2    Tautz, D.3
  • 15
    • 0023032969 scopus 로고
    • Cross-regulatory interactions among the gap genes of Drosophila
    • Jackle, H., Tautz, D., Schuh, R., Seifert, E., Lehmann, R.: Cross-regulatory interactions among the gap genes of Drosophila. Nature 324, 668-670 (1986)
    • (1986) Nature , vol.324 , pp. 668-670
    • Jackle, H.1    Tautz, D.2    Schuh, R.3    Seifert, E.4    Lehmann, R.5
  • 16
    • 0025981573 scopus 로고
    • Mutually repressive interactions between the gap genes giant and Krüppel define middle body regions of the Drosophila embryo
    • Kraut, R., Levine, M.: Mutually repressive interactions between the gap genes giant and Krüppel define middle body regions of the Drosophila embryo. Development 111, 611-621 (1991)
    • (1991) Development , vol.111 , pp. 611-621
    • Kraut, R.1    Levine, M.2
  • 17
    • 0024947426 scopus 로고
    • The products of the Drosophila gap genes hunchback and Krüppel bind to the hunchback promoters
    • Treisman, J., Desplan, C.: The products of the Drosophila gap genes hunchback and Krüppel bind to the hunchback promoters. Nature 341, 335-337 (1989)
    • (1989) Nature , vol.341 , pp. 335-337
    • Treisman, J.1    Desplan, C.2
  • 18
    • 0037075022 scopus 로고    scopus 로고
    • Establishment of developmental precision and proportions in the early Drosophila embryo
    • Houchmandzadeh, B., Wieschaus, E., Leibler, S.: Establishment of developmental precision and proportions in the early Drosophila embryo. Nature 415, 798-802 (2002)
    • (2002) Nature , vol.415 , pp. 798-802
    • Houchmandzadeh, B.1    Wieschaus, E.2    Leibler, S.3
  • 19
    • 34447099234 scopus 로고    scopus 로고
    • Probing the limits to positional information
    • Gregor, T., Tank, D.W., Wieschaus, E.F., Bialek, W.: Probing the limits to positional information. Cell 130, 153-164 (2007)
    • (2007) Cell , vol.130 , pp. 153-164
    • Gregor, T.1    Tank, D.W.2    Wieschaus, E.F.3    Bialek, W.4
  • 20
    • 34247619844 scopus 로고    scopus 로고
    • Fundamental limits to position determination by concentration gradients
    • Tostevin, F., tenWolde, P.R., Howard, M.: Fundamental limits to position determination by concentration gradients. PLoS Comput Biol 3, e78 (2007)
    • (2007) PLoS Comput Biol , vol.3
    • Tostevin, F.1    TenWolde, P.R.2    Howard, M.3
  • 21
    • 0017664223 scopus 로고
    • Physics of chemoreception
    • Berg, H.C., Purcell, E.M.: Physics of chemoreception. Biophys. J. 20, 193-219 (1977)
    • (1977) Biophys. J. , vol.20 , pp. 193-219
    • Berg, H.C.1    Purcell, E.M.2
  • 22
    • 79958238839 scopus 로고    scopus 로고
    • Physical aspects of precision in genetic regulation
    • doi:10.1007/s10867-010-9208-2
    • Tamari, Z., Barkai, N., Fouxon, I.: Physical aspects of precision in genetic regulation. J. Biol. Phys. 37, 227-238 (2010). doi:10.1007/s10867-010- 9208-2
    • (2010) J. Biol. Phys. , vol.37 , pp. 227-238
    • Tamari, Z.1    Barkai, N.2    Fouxon, I.3
  • 23
    • 0021865638 scopus 로고
    • Spatial and temporal patterns of Krüppel gene expression in early Drosophila embryos
    • Knipple, D.C., Seifert, E., Rosenberg, U.B., Preiss, A., Jackle, H.: Spatial and temporal patterns of Krüppel gene expression in early Drosophila embryos. Nature 317, 40-44 (1985)
    • (1985) Nature , vol.317 , pp. 40-44
    • Knipple, D.C.1    Seifert, E.2    Rosenberg, U.B.3    Preiss, A.4    Jackle, H.5
  • 24
    • 77955764031 scopus 로고    scopus 로고
    • The time to measure positional information: Maternal hunchback is required for the synchrony of the bicoid transcriptional response at the onset of zygotic transcription
    • Porcher, A., Abu-Arish, A., Huart, S., Roelens, B., Fradin, C., Dostatni, N.: The time to measure positional information: maternal hunchback is required for the synchrony of the bicoid transcriptional response at the onset of zygotic transcription. Development 137, 2795-2804 (2010)
    • (2010) Development , vol.137 , pp. 2795-2804
    • Porcher, A.1    Abu-Arish, A.2    Huart, S.3    Roelens, B.4    Fradin, C.5    Dostatni, N.6
  • 25
    • 0029988195 scopus 로고    scopus 로고
    • Activation of transcription in Drosophila embryos is a gradual process mediated by the nucleocytoplasmic ratio
    • Pritchard, D.K., Schubiger, G.: Activation of transcription in Drosophila embryos is a gradual process mediated by the nucleocytoplasmic ratio. Genes Dev. 10, 1131-1142 (1996)
    • (1996) Genes Dev. , vol.10 , pp. 1131-1142
    • Pritchard, D.K.1    Schubiger, G.2
  • 26
    • 33846359035 scopus 로고    scopus 로고
    • Known maternal gradients are not sufficient for the establishment of gap domains in Drosophila melanogaster
    • Jaeger, J., Sharp, D.H., Reinitz, J.: Known maternal gradients are not sufficient for the establishment of gap domains in Drosophila melanogaster. Mech. Dev. 124, 108-128 (2007)
    • (2007) Mech. Dev. , vol.124 , pp. 108-128
    • Jaeger, J.1    Sharp, D.H.2    Reinitz, J.3
  • 27
    • 34447104600 scopus 로고    scopus 로고
    • Stability and nuclear dynamics of the bicoid morphogen gradient
    • Gregor, T., Wieschaus, E.F., McGregor, A.P., Bialek, W., Tank, D.W.: Stability and nuclear dynamics of the bicoid morphogen gradient. Cell 130, 141-152 (2007)
    • (2007) Cell , vol.130 , pp. 141-152
    • Gregor, T.1    Wieschaus, E.F.2    McGregor, A.P.3    Bialek, W.4    Tank, D.W.5
  • 28
    • 37649010795 scopus 로고    scopus 로고
    • Re-examining the stability of the bicoid morphogen gradient
    • Bergmann, S., Tamari, Z., Schejter, E., Shilo, B.Z., Barkai, N.: Re-examining the stability of the bicoid morphogen gradient. Cell 132, 15-17 (2008)
    • (2008) Cell , vol.132 , pp. 15-17
    • Bergmann, S.1    Tamari, Z.2    Schejter, E.3    Shilo, B.Z.4    Barkai, N.5
  • 29
    • 75649091187 scopus 로고    scopus 로고
    • When it pays to rush: Interpreting morphogen gradients prior to steady-state
    • Saunders, T., Howard, M.: When it pays to rush: interpreting morphogen gradients prior to steady-state. Phys. Biol. 6, 046020 (2009)
    • (2009) Phys. Biol. , vol.6 , pp. 046020
    • Saunders, T.1    Howard, M.2
  • 30
    • 0017030517 scopus 로고
    • A general method for numerically simulating the time evolution of coupled chemical reactions
    • Gillespie, D.T.: A general method for numerically simulating the time evolution of coupled chemical reactions. J. Comp. Phys. 22, 403-434 (1976)
    • (1976) J. Comp. Phys. , vol.22 , pp. 403-434
    • Gillespie, D.T.1
  • 31
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Gillespie, D.T.: Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem. 71, 2340-2361 (1977)
    • (1977) J. Phys. Chem. , vol.71 , pp. 2340-2361
    • Gillespie, D.T.1
  • 33
    • 84855278307 scopus 로고    scopus 로고
    • Uppsala University, Department of Information Technology, Scientific Computing
    • Hattne, J., Elf, J.: The Algorithms and Implementation of MesoRD. Uppsala University, Department of Information Technology, Scientific Computing (2006)
    • (2006) The Algorithms and Implementation of MesoRD
    • Hattne, J.1    Elf, J.2
  • 34
    • 0001138912 scopus 로고
    • Drei vortrage über diffusion, brownsche bewegung und koagulation von kolloidteilchen
    • von Smoluchowski, M.: Drei vortrage über diffusion, brownsche bewegung und koagulation von kolloidteilchen. Z. Phys. 17, 557-585 (1916)
    • (1916) Z. Phys. , vol.17 , pp. 557-585
    • Von Smoluchowski, M.1
  • 36
    • 77949393145 scopus 로고    scopus 로고
    • Precision and scaling in morphogen gradient read-out
    • de Lachapelle, A.M., Bergmann, S.: Precision and scaling in morphogen gradient read-out. Mol. Syst. Biol. 6, 351 (2010)
    • (2010) Mol. Syst. Biol. , vol.6 , pp. 351
    • De Lachapelle, A.M.1    Bergmann, S.2
  • 37
    • 0024569785 scopus 로고
    • The bicoid protein is a positive regulator of hunchback transcription in the early Drosophila embryo
    • Driever, W., Nusslein-Volhard, C.: The bicoid protein is a positive regulator of hunchback transcription in the early Drosophila embryo. Nature 337, 138-143 (1989)
    • (1989) Nature , vol.337 , pp. 138-143
    • Driever, W.1    Nusslein-Volhard, C.2
  • 38
    • 0025861602 scopus 로고
    • Gene expression mediated by cis-acting sequences of the Krüppel gene in response to the Drosophila morphogens bicoid and hunchback
    • Hoch, M., Seifert, E., Jackle, H.: Gene expression mediated by cis-acting sequences of the Krüppel gene in response to the Drosophila morphogens bicoid and hunchback. EMBO J. 10, 2267-2278 (1991)
    • (1991) EMBO J. , vol.10 , pp. 2267-2278
    • Hoch, M.1    Seifert, E.2    Jackle, H.3
  • 39
    • 0028021851 scopus 로고
    • Synergy between the hunchback and bicoid morphogens is required for anterior patterning in Drosophila
    • Simpson-Brose, M., Treisman, J., Desplan, C.: Synergy between the hunchback and bicoid morphogens is required for anterior patterning in Drosophila. Cell 78, 855-865 (1994)
    • (1994) Cell , vol.78 , pp. 855-865
    • Simpson-Brose, M.1    Treisman, J.2    Desplan, C.3


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