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Volumn 39, Issue 5, 2012, Pages 5201-5210

Genetic variation, population structure and identification of yellow catfish, Mystus nemurus (C&V) in Thailand using RAPD, ISSR and SCAR marker

Author keywords

Genetic differentiation; Genetic variation; ISSR; Mystus nemurus; RAPD; SCAR

Indexed keywords

ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; CATFISH; CONTROLLED STUDY; GENE FLOW; GENE FREQUENCY; GENETIC ANALYSIS; GENETIC DISTANCE; GENETIC IDENTIFICATION; GENETIC VARIABILITY; INTER SIMPLE SEQUENCE REPEAT; MYSTUS NEMURUS; NONHUMAN; PHYLOGENETIC TREE; POLYMORPHIC LOCUS; POPULATION GENETICS; POPULATION STRUCTURE; RANDOM AMPLIFIED POLYMORPHIC DNA; SEQUENCE CHARACTERIZED AMPLIFIED REGION; SPECIES DIFFERENCE; SPECIES IDENTIFICATION; THAILAND; ANIMAL; DNA FINGERPRINTING; GENETIC MARKER; GENETICS; GEOGRAPHY; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; POPULATION DYNAMICS;

EID: 84863763121     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-011-1317-x     Document Type: Article
Times cited : (37)

References (38)
  • 2
    • 0033752495 scopus 로고    scopus 로고
    • Identification and characterization of Malaysian River Catfish Mystus Nemurus (C&V): RAPD and AFLP Analysis
    • Chong LK, Tan SG, Yusoff K, Siraj SS (2000) Identification and characterization of Malaysian River Catfish, Mystus nemurus (C&V): RAPD and AFLP analysis. Biochem Genet 38(3-4):63-76
    • (2000) Biochem Genet , vol.38 , Issue.3-4 , pp. 63-76
    • Chong, L.K.1    Tan, S.G.2    Yusoff, K.3    Siraj, S.S.4
  • 3
    • 80052466775 scopus 로고    scopus 로고
    • Molecular discrimination of six species of Bagrid catfishes from Indus river system using randomly amplified polymorphic DNA markers
    • doi:10.1007/s11033-010-9960-1
    • Saini A, Dua A, Mohindra V, Lakra WS (2010) Molecular discrimination of six species of Bagrid catfishes from Indus river system using randomly amplified polymorphic DNA markers. Mol Biol Rep. doi:10.1007/s11033-010-9960-1
    • (2010) Mol Biol Rep
    • Saini, A.1    Dua, A.2    Mohindra, V.3    Lakra, W.S.4
  • 4
    • 77951906325 scopus 로고    scopus 로고
    • Clarias batrachus (Linn.1758) population is lacking genetic diversity in India
    • doi: 10.1007/s11033-009-9517-3
    • Khedkar GD, Reddy CS, Mnaa P, Ravinder K, Muzumdar K (2010) Clarias batrachus (Linn.1758) population is lacking genetic diversity in India. Mol Biol Rep 37:1355-1362. doi: 10.1007/s11033-009-9517-3
    • (2010) Mol Biol Rep , vol.37 , pp. 1355-1362
    • Khedkar, G.D.1    Reddy, C.S.2    Mnaa, P.3    Ravinder, K.4    Muzumdar, K.5
  • 6
    • 79151472549 scopus 로고    scopus 로고
    • Development and characterization of RAPD and microsatellite markers for genetic variation analysis in the critically endangered yellow catfish Horabagrus nigricollaris (Teleostei: Horabagridae)
    • doi:10.1007/s10528-010-9389-1
    • Muneer PM, Sivanandan R, Gopalakrishnan A, Basheer VS, Musammilu KK, Ponniah AG (2011) Development and characterization of RAPD and microsatellite markers for genetic variation analysis in the critically endangered yellow catfish Horabagrus nigricollaris (Teleostei: Horabagridae). Biochem Genet 49:83-95. doi:10.1007/s10528-010-9389-1
    • (2011) Biochem Genet , vol.49 , pp. 83-95
    • Muneer, P.M.1    Sivanandan, R.2    Gopalakrishnan, A.3    Basheer, V.S.4    Musammilu, K.K.5    Ponniah, A.G.6
  • 8
    • 0037451666 scopus 로고    scopus 로고
    • Genetic variation between four species of Indian major carps as revealed by random amplified polymorphic DNA assay
    • Barman HK, Barat A, Yadav BM, Banerjee S, Meher PK, Reddy PVGK, Jana RK (2003) Genetic variation between four species of Indian major carps as revealed by random amplified polymorphic DNA assay. Aquaculture 217:115-123
    • (2003) Aquaculture , vol.217 , pp. 115-123
    • Barman, H.K.1    Barat, A.2    Yadav, B.M.3    Banerjee, S.4    Meher, P.K.5    Pvgk, R.6    Jana, R.K.7
  • 10
    • 34547697698 scopus 로고    scopus 로고
    • Genetic differentiation among common and selected hatchery populations of flounder: Evidence from RAPD markers
    • Liu YG, Chen SL, Li BF (2007) Genetic differentiation among common and selected hatchery populations of flounder: evidence from RAPD markers. Biochem Syst Ecol 35:689-695
    • (2007) Biochem Syst Ecol , vol.35 , pp. 689-695
    • Liu, Y.G.1    Chen, S.L.2    Li, B.F.3
  • 11
    • 33646896760 scopus 로고    scopus 로고
    • Genetic diversity in three Japanese flounder (Paralichthys olivaceus) populations revealed by ISSR markers
    • Liu YG, Chen SL, Li J, Li BF (2006) Genetic diversity in three Japanese flounder (Paralichthys olivaceus) populations revealed by ISSR markers. Aquaculture 255:565-572
    • (2006) Aquaculture , vol.255 , pp. 565-572
    • Liu, Y.G.1    Chen, S.L.2    Li, J.3    Li, B.F.4
  • 12
    • 33750584409 scopus 로고    scopus 로고
    • Genetic characterizations of Mactra veneriformis (Bivalve) along the Chinese coast using ISSR-PCR markers
    • Hou L, Lu H, Zou X, Bi X, Yan D, He C (2006) Genetic characterizations of Mactra veneriformis (Bivalve) along the Chinese coast using ISSR-PCR markers. Aquaculture 261:865-871
    • (2006) Aquaculture , vol.261 , pp. 865-871
    • Hou, L.1    Lu, H.2    Zou, X.3    Bi, X.4    Yan, D.5    He, C.6
  • 13
    • 72549089558 scopus 로고    scopus 로고
    • Analysis of genetic variation in grass carp (Ctenopharyngodon idellus) from native and colonized regions using ISSR markers
    • Chen Q, Wang CH, Lu G, Song X, Xu JW, Yang QL, Li SF (2009) Analysis of genetic variation in grass carp (Ctenopharyngodon idellus) from native and colonized regions using ISSR markers. Biochem Syst Ecol 37:549-555
    • (2009) Biochem Syst Ecol , vol.37 , pp. 549-555
    • Chen, Q.1    Wang, C.H.2    Lu, G.3    Song, X.4    Xu, J.W.5    Yang, Q.L.6    Li, S.F.7
  • 14
    • 57749085486 scopus 로고    scopus 로고
    • Population genetics studies of half-smooth tongue sole Cynoglossus semilaevis using ISSR markers
    • Liu YG, Yu ZG, Bao BL, San XQ, Shi QL, Liu LX (2009) Population genetics studies of half-smooth tongue sole Cynoglossus semilaevis using ISSR markers. Biochem Syst Ecol 36: 821-827
    • (2009) Biochem Syst Ecol , vol.36 , pp. 821-827
    • Liu, Y.G.1    Yu, Z.G.2    Bao, B.L.3    San, X.Q.4    Shi, Q.L.5    Liu, L.X.6
  • 16
    • 0033666268 scopus 로고    scopus 로고
    • Development of Species-Specific Markers of the Tropical Oyster (Crassostrea belcheri) in Thailand
    • doi:10.1007/s101260000028
    • Klinbunga S, Ampayup P, Tassanakojon A, Jarayabhand P, Yoosukh W (2000) Development of Species-Specific Markers of the Tropical Oyster (Crassostrea belcheri) in Thailand. Mar Biotechnol 2:476-484. doi:10.1007/s101260000028
    • (2000) Mar Biotechnol , vol.2 , pp. 476-484
    • Klinbunga, S.1    Ampayup, P.2    Tassanakojon, A.3    Jarayabhand, P.4    Yoosukh, W.5
  • 17
    • 2342621281 scopus 로고    scopus 로고
    • Species Identification of the Tropical Abalone (Haliotis asinina, Haliotis ovina, and Haliotis varia) in Thailand Using RAPD and SCAR Markers
    • Klinbunga S, Amparyup P, Leelatanawit R, Tassanakajon A, Hirono I, Aoki T, Jarayabhand P, Menasveta P (2004) Species Identification of the Tropical Abalone (Haliotis asinina, Haliotis ovina, and Haliotis varia) in Thailand Using RAPD and SCAR Markers. J Biochem Mol Biol 37(2):213-222
    • (2004) J Biochem Mol Biol , vol.37 , Issue.2 , pp. 213-222
    • Klinbunga, S.1    Amparyup, P.2    Leelatanawit, R.3    Tassanakajon, A.4    Hirono, I.5    Aoki, T.6    Jarayabhand, P.7    Menasveta, P.8
  • 18
    • 77957328520 scopus 로고    scopus 로고
    • Species identification of the blue swimming crab Portunus pelagicus in Thai waters using mtDNA and RAPD-derived SCAR markers
    • Klinbunga S, Thamniemdee N, Yuvanatemiya V, Khetpu K, Khamnamtong B, Menasveta P (2010) Species identification of the blue swimming crab Portunus pelagicus in Thai waters using mtDNA and RAPD-derived SCAR markers. Aquaculture 308: S39-S46
    • (2010) Aquaculture , vol.308
    • Klinbunga, S.1    Thamniemdee, N.2    Yuvanatemiya, V.3    Khetpu, K.4    Khamnamtong, B.5    Menasveta, P.6
  • 19
    • 84983064883 scopus 로고    scopus 로고
    • RAPD-SCAR markers for genetically improved NEW GIFT Nile Tilapia (Oreochromis niloticus niloticus L.) and their application in strain identification
    • doi:10.3724/SP.J.1141.2010.02147
    • Li SF, Tang SJ, Cai WQ (2010) RAPD-SCAR markers for genetically improved NEW GIFT Nile Tilapia (Oreochromis niloticus niloticus L.) and their application in strain identification. Zool Res 31(2):147-153. doi:10.3724/SP.J.1141.2010. 02147
    • (2010) Zool Res , vol.31 , Issue.2 , pp. 147-153
    • Li, S.F.1    Tang, S.J.2    Cai, W.Q.3
  • 20
    • 19744372327 scopus 로고    scopus 로고
    • Identification of a dominant SCAR marker associated with colour traits in Coho salmon (Oncorhynchus kisutch)
    • Araneda C, Neira R, Iturra P (2005) Identification of a dominant SCAR marker associated with colour traits in Coho salmon (Oncorhynchus kisutch). Aquaculture 247:67-73
    • (2005) Aquaculture , vol.247 , pp. 67-73
    • Araneda, C.1    Neira, R.2    Iturra, P.3
  • 21
    • 70249129322 scopus 로고    scopus 로고
    • Identification, development, and characterization of three molecular markers associated to spawning date in Coho salmon (Oncorhynchus kisutch)
    • Araneda C, Lam N, Nelson FD, Cortez S, Claudio P, Neira R, Iturra P (2009) Identification, development, and characterization of three molecular markers associated to spawning date in Coho salmon (Oncorhynchus kisutch). Aquaculture 296:21-26
    • (2009) Aquaculture , vol.296 , pp. 21-26
    • Araneda, C.1    Lam, N.2    Nelson, F.D.3    Cortez, S.4    Claudio, P.5    Neira, R.6    Iturra, P.7
  • 22
    • 0035476094 scopus 로고    scopus 로고
    • Molecular analysis of silver crucian carp (Carassius auratus gibelio Bloch) clones by SCAR markers
    • Zhou L, Wang Y, Gui JF (2001) Molecular analysis of silver crucian carp (Carassius auratus gibelio Bloch) clones by SCAR markers. Aquaculture 201:219-228
    • (2001) Aquaculture , vol.201 , pp. 219-228
    • Zhou, L.1    Wang, Y.2    Gui, J.F.3
  • 23
    • 70350286226 scopus 로고    scopus 로고
    • Sequence characterized amplified regions (SCAR) reveal candidate markers linked to growth traits in the Chinese shrimp Fenneropenaeus chinensis
    • doi:10.1007/s12562-009-0137-6
    • He YY, Liu P, Li J, Wang QY (2009) Sequence characterized amplified regions (SCAR) reveal candidate markers linked to growth traits in the Chinese shrimp Fenneropenaeus chinensis. Fish Sci 75:1267-1274. doi:10.1007/s12562-009- 0137-6
    • (2009) Fish Sci , vol.75 , pp. 1267-1274
    • He, Y.Y.1    Liu, P.2    Li, J.3    Wang, Q.Y.4
  • 24
    • 0344231905 scopus 로고    scopus 로고
    • Isolation and characterization of microsatellite in the Southeast Asian river catfish Mystus nemurus
    • Usmani S, Tan SG, Siraj SS, Yusoff K (2001) Isolation and characterization of microsatellite in the Southeast Asian river catfish Mystus nemurus. Mol Ecol Notes 1:264-266
    • (2001) Mol Ecol Notes , vol.1 , pp. 264-266
    • Usmani, S.1    Tan, S.G.2    Siraj, S.S.3    Yusoff, K.4
  • 25
    • 0345581698 scopus 로고    scopus 로고
    • Population structure of the Southeast Asian river catfish Mystus nemurus
    • Usmani S, Tan SG, Siraj SS, Yusoff K (2003) Population structure of the Southeast Asian river catfish Mystus nemurus. Anim Genet 34:462-464
    • (2003) Anim Genet , vol.34 , pp. 462-464
    • Usmani, S.1    Tan, S.G.2    Siraj, S.S.3    Yusoff, K.4
  • 26
    • 84864281100 scopus 로고    scopus 로고
    • Isolation and development of DNA microsatellite markers for the river catfish (Mystus nemurus)
    • Hoh BP, Siraj SS, Tan SG, Yusoff K (2007) Isolation and development of DNA microsatellite markers for the river catfish (Mystus nemurus). Asian Fish Sci 20:41-53
    • (2007) Asian Fish Sci , vol.20 , pp. 41-53
    • Hoh, B.P.1    Siraj, S.S.2    Tan, S.G.3    Yusoff, K.4
  • 28
    • 0028484551 scopus 로고
    • Application of the RAPD technique in tilapia fish: Species and subspecies identification
    • Bardakci F, Skibinski DOF (1994) Application of the RAPD technique in tilapia fish: species and subspecies identification. Heredity 73:117-123
    • (1994) Heredity , vol.73 , pp. 117-123
    • Bardakci, F.1    Skibinski, D.O.F.2
  • 29
    • 55949103195 scopus 로고    scopus 로고
    • Using molecular methods to determine the origin of weed populations of Pereskia aculeate in South Africa and its relevance to biological control
    • Paterso ID, Dowie DA, Hill MP (2009) Using molecular methods to determine the origin of weed populations of Pereskia aculeate in South Africa and its relevance to biological control. Biol Control 48:84-91
    • (2009) Biol Control , vol.48 , pp. 84-91
    • Paterso, I.D.1    Dowie, D.A.2    Hill, M.P.3
  • 31
    • 0018147653 scopus 로고
    • Estimation of average heterozygosity and genetic distance from a small number of individuals
    • Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583-590
    • (1978) Genetics , vol.89 , pp. 583-590
    • Nei, M.1
  • 33
    • 85007110786 scopus 로고    scopus 로고
    • Arliquin ver3.0: An integrated software package for population genetics data analysis
    • Excoffier L, Laval G, Schneider S (2005) Arliquin ver. 3.0: an integrated software package for population genetics data analysis. Evol Bioinformatic Online 1:47-50
    • (2005) Evol Bioinformatic Online , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 34
    • 0014054519 scopus 로고
    • The detection of disease clustering and a generalized regression approach
    • Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27:209-220
    • (1967) Cancer Res , vol.27 , pp. 209-220
    • Mantel, N.1
  • 35
    • 0003443698 scopus 로고    scopus 로고
    • Tool for population genetic analysis (TFPGA) version 1.3
    • Northern Arizona University
    • Miller MP (1997) Tool for population genetic analysis (TFPGA) version 1.3. Northern Arizona University, Arizona
    • (1997) Arizona
    • Miller, M.P.1
  • 36
    • 34250079231 scopus 로고
    • Development of reliable PCRbased markers linked to downy mildew resistance genes in lettuce
    • Paran I, Michelmore R (1993) Development of reliable PCRbased markers linked to downy mildew resistance genes in lettuce. Theor Appl Genet 85:985-993
    • (1993) Theor Appl Genet , vol.85 , pp. 985-993
    • Paran, I.1    Michelmore, R.2
  • 37
    • 70349410706 scopus 로고    scopus 로고
    • RAPD analysis for genetic diversity of two populations of Mystus vittatus (Bloch) of Madhya Pradesh, India
    • Garg RK, Silawat N, Sairkar P, Vijay N, Mehrotra NN (2009) RAPD analysis for genetic diversity of two populations of Mystus vittatus (Bloch) of Madhya Pradesh, India. Afr J Biotechnol 8(17):4032-4038
    • (2009) Afr J Biotechnol , vol.8 , Issue.17 , pp. 4032-4038
    • Garg, R.K.1    Silawat, N.2    Sairkar, P.3    Vijay, N.4    Mehrotra, N.N.5
  • 38
    • 0003470431 scopus 로고
    • Evolution and genetics of population
    • University of Chicago Press
    • Wright S (1978) Evolution and genetics of population. University of Chicago Press, Chicago
    • (1978) Chicago
    • Wright, S.1


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