Distinct mechanisms regulating gene expression coexist within the fermentative pathways in Chlamydomonas reinhardtii

The Scientific World Journal

Volumn 2012, Issue , 2012, Pages

  Swirsky Whitney, Larisa Angela ^a   Novi, Giacomo ^b   Perata, Pierdomenico ^b   Loreti, Elena ^c  

^a UNIVERSITY OF PISA   (Italy)

^b SCUOLA SUPERIORE SANT ANNA   (Italy)

^c Institute of Agricultural Biology and Biotechnology   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOL DEHYDROGENASE; ALCOHOL DEHYDROGENASE 2; ALGAL PROTEIN; LACTATE DEHYDROGENASE; LACTATE DEHYDROGENASE 1; LYASE; OXIDOREDUCTASE; OXYGEN; PYRUVATE DECARBOXYLASE; PYRUVATE DECARBOXYLASE 3; PYRUVATE FEREDOXIN OXIDOREDUCTASE; PYRUVATE FORMATE LYASE 1; UNCLASSIFIED DRUG; COMPLEMENTARY DNA; RNA; TRANSCRIPTOME; UPTAKE HYDROGENASE;

ARTICLE; CHLAMYDOMONAS REINHARDTII; CIRCADIAN RHYTHM; CONTROLLED STUDY; DARKNESS; FERMENTATION; GENE EXPRESSION REGULATION; GENETIC VARIABILITY; LIGHT DARK CYCLE; LIGHT EXPOSURE; NONHUMAN; OXYGENATION; CULTURE TECHNIQUE; ENZYMOLOGY; GENETICS; LIGHT; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE;

CHLAMYDOMONAS; CHLAMYDOMONAS REINHARDTII; CHLOROPHYTA;

BASE SEQUENCE; CHLAMYDOMONAS REINHARDTII; CIRCADIAN RHYTHM; CULTURE TECHNIQUES; DNA, COMPLEMENTARY; FERMENTATION; GENE EXPRESSION REGULATION, PLANT; LIGHT; MOLECULAR SEQUENCE DATA; OXIDOREDUCTASES; OXYGEN; RNA; TRANSCRIPTOME;

EID: 84863753812     PISSN: None     EISSN: 1537744X     Source Type: Journal    
DOI: 10.1100/2012/565047     Document Type: Article

References (35)

1. Lee H. S., Vermaas W. F. J., Rittmann B. E., Biological hydrogen production: prospects and challenges Trends in Biotechnology 2010 28 5 262 271
2. Godman J. E., Molnr A., Baulcombe D. C., Balk J., Distinct in-vivo functions of HYD genes in Chlamydomonas RNA silencing of hydrogenase(-like) genes and investigation of their physiological roles in the green alga Chlamydomonas reinhardtii Biochemical Journal 2010 431 3 345 351
3. Stripp S. T., Goldet G., Brandmayr C., Sanganas O., Vincent K. A., Haumann M., Armstrong F. A., Happe T., How oxygen attacks [FeFe] hydrogenases from photosynthetic organisms Proceedings of the National Academy of Sciences of the United States of America 2009 106 41 17331 17336
4. Steunou A. S., Bhaya D., Bateson M. M., Melendrez M. C., Ward D. M., Brecht E., Peters J. W., Khl M., Grossman A. R., In situ analysis of nitrogen fixation and metabolic switching in unicellular thermophilic cyanobacteria inhabiting hot spring microbial mats Proceedings of the National Academy of Sciences of the United States of America 2006 103 7 2398 2403 (Pubitemid 43271681)
5. Melis A., Zhang L., Forestier M., Ghirardi M. L., Seibert M., Sustained photobiological hydrogen gas production upon reversible inactivation of oxygen evolution in the green alga Chlamydomonas reinhardtii Plant Physiology 2000 122 1 127 135
6. Melis A., Photosynthetic H 2 metabolism in Chlamydomonas reinhardtii (unicellular green algae) Planta 2007 226 5 1075 1086 (Pubitemid 47383810)
7. Gfeller R. P., Gibbs M., Fermentative metabolism of Chlamydomonas reinhardtii. analysis of fermentative products from starch in dark and light Plant Physiology 1984 75 212 218
8. Kreuzberg K., Starch fermentation via a formate producing pathway in Chlamydomonas reinhardtii, Chlorogonium elongatum and Chlorella fusca Physiologia Plantarum 1984 61 87 94
9. Ohta S., Miyamoto K., Miura Y., Hydrogen evolution as a consumption mode of reducing equivalents in green algal fermentation Plant Physiology 1987 83 1022 1026
10. Hemschemeier A., Happe T., The exceptional photofermentative hydrogen metabolism of the green alga Chlamydomonas reinhardtii Biochemical Society Transactions 2005 33 1 39 41 (Pubitemid 40313756)
11. Mus F., Dubini A., Seibert M., Posewitz M. C., Grossman A. R., Anaerobic acclimation in Chlamydomonas reinhardtii: anoxic gene expression, hydrogenase induction, and metabolic pathways The Journal of Biological Chemistry 2007 282 35 25475 25486 (Pubitemid 47372807)
12. Melis A., Happe T., Hydrogen production. Green algae as a source of energy Plant Physiology 2001 127 3 740 748 (Pubitemid 33112139)
13. Grossman A. R., Croft M., Gladyshev V. N., Merchant S. S., Posewitz M. C., Prochnik S., Spalding M. H., Novel metabolism in Chlamydomonas through the lens of genomics Current Opinion in Plant Biology 2007 10 2 190 198 (Pubitemid 46330114)
14. Magneschi L., Catalanotti C., Subramanian V., A mutant in the ADH1 gene of Chlamydomonas reinhardtii elicits metabolic restructuring during anaerobiosis Plant Physiology 2012 158 3 1293 1305
15. Dubini A., Mus F., Seibert M., Grossman A. R., Posewitz M. C., Flexibility in anaerobic metabolism as revealed in a mutant of Chlamydomonas reinhardtii lacking hydrogenase activity The Journal of Biological Chemistry 2009 284 11 7201 7213
16. Grossman A. R., Catalanotti C., Yang W., Dubini A., Magneschi L., Subramanian V., Posewitz M. C., Seibert M., Multiple facets of anoxic metabolism and hydrogen production in the unicellular green alga Chlamydomonas reinhardtii New Phytologist 2011 190 2 279 288
17. Matthew T., Zhou W., Rupprecht J., Lim L., Thomas-Hall S. R., Doebbe A., Kruse O., Hankamer B., Marx U. C., Smith S. M., Schenk P. M., The metabolome of Chlamydomonas reinhardtii following induction of anaerobic H 2 production by sulfur depletion The Journal of Biological Chemistry 2009 284 35 23415 23425
18. Melis A., Seibert M., Ghirardi M. L., Hydrogen fuel production by transgenic microalgae Advances in Experimental Medicine and Biology 2007 616 110 121
19. Ratcliffe R. G., Egginton S., Taylor E. W., Raven J. A., Intracellular pH regulation in plants under anoxia Regulation of Tissue pH in Plants and Animals: A Reappraisal of Current Techniques 1999 Cambridge University Press 193 213
20. Felle H. H., pH regulation in anoxic plants Annals of Botany 2005 96 4 519 532 (Pubitemid 41298045)
21. Couldwell D. L., Dunford R., Kruger N. J., Lloyd D. C., Ratcliffe R. G., Smith A. M. O., Response of cytoplasmic pH to anoxia in plant tissues with altered activities of fermentation enzymes: application of methyl phosphonate as an NMR pH probe Annals of Botany 2009 103 2 249 258
22. Mueller M., Marr J. J., Nilsen T. W., Komuniecki R. W., Energy metabolism: anaerobic protozoa Molecular Medical Parasitology 2003 London, UK Academic Press 125 139
23. Atteia A., Van Lis R., Gelius-Dietrich G., Adrait A., Garin J., Joyard J., Rolland N., Martin W., Pyruvate formate-lyase and a novel route of eukaryotic ATP synthesis in Chlamydomonas mitochondria The Journal of Biological Chemistry 2006 281 15 9909 9918 (Pubitemid 43864523)
24. Philipps G., Krawietz D., Hemschemeier A., Happe T., A pyruvate formate lyase-deficient Chlamydomonas reinhardtii strain provides evidence for a link between fermentation and hydrogen production in green algae Plant Journal 2011 66 2 330 340
25. Chochois V., Dauvillee D., Beyly A., Hydrogen production in Chlamydomonas: PS11-dependent and independent pathways differ in their requirement on starch metabolism Plant Physiology 2009 151 631 640
26. Whitney L. A. S., Loreti E., Alpi A., Perata P., Alcohol dehydrogenase and hydrogenase transcript fluctuations during a day-night cycle in Chlamydomonas reinhardtii: the role of anoxia New Phytologist 2011 190 2 488 498
27. Ral J. P., Colleoni C., Wattebled F., Dauvillée D., Nempont C., Deschamps P., Li Z., Morell M. K., Chibbar R., Purton S., D'Hulst C., Ball S. G., Circadian clock regulation of starch metabolism establishes GBSSI as a major contributor to amylopectin synthesis in Chlamydomonas reinhardtii Plant Physiology 2006 142 1 305 317 (Pubitemid 44412249)
28. Kucho K. I., Okamoto K., Tabata S., Fukuzawa H., Ishiura M., Identification of novel clock-controlled genes by cDNA macroarray analysis in Chlamydomonas reinhardtii Plant Molecular Biology 2005 57 6 889 906 (Pubitemid 40882885)
29. Harris E. H., The Chlamydomonas Sourcebook. A Comprehensive Guide to Biology and Laboratory Use 2001 San Diego, Calif, USA Academic Press
30. Spudich J. L., Sager R., Regulation of the Chlamydomonas cell cycle by light and dark Journal of Cell Biology 1980 85 1 136 145 (Pubitemid 10066354)
31. Moulager M., Monnier A., Jesson B., Bouvet R., Mosser J., Schwartz C., Garnier L., Corellou F., Bouget F. Y., Light-dependent regulation of cell division in Ostreococcus: evidence for a major transcriptional input Plant Physiology 2007 144 3 1360 1369 (Pubitemid 47037452)
32. Goto K., Johnson C. H., Is the cell division cycle gated by a circadian clock? The case of Chlamydomonas reinhardtii Journal of Cell Biology 1995 129 4 1061 1069
33. Sawers R. G., Formate and its role in hydrogen production in Escherichia coli Biochemical Society Transactions 2005 33 1 42 46 (Pubitemid 40313757)
34. Xiong J., Minagawa J., Crofts A., Govindjee, Loss of inhibition by formate in newly constructed photosystem II D1 mutants, D1-R257E and D1-R257M, of Chlamydomonas reinhardtii Biochimica et Biophysica Acta 1998 1365 3 473 491 (Pubitemid 29012404)
35. Voytsekh O., Seitz S. B., Iliev D., Mittag M., Both subunits of the circadian RNA-binding protein CHLAMY1 can integrate temperature information Plant Physiology 2008 147 4 2179 2193 (Pubitemid 352844249)