Both subunits of the circadian RNA-binding protein CHLAMY1 can integrate temperature information

Plant Physiology

Volumn 147, Issue 4, 2008, Pages 2179-2193

  Voytsekh, Olga ^a   Seitz, Stefanie B ^a   Iliev, Dobromir ^a,b   Mittag, Maria ^a  

^a FRIEDRICH SCHILLER UNIVERSITY JENA   (Germany)

^b LUND UNIVERSITY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

CHLAMYDOMONAS REINHARDTII; CHLOROPHYTA;

ALGAL PROTEIN; PROTEIN SUBUNIT; RNA BINDING PROTEIN;

ANIMAL; ARTICLE; CHEMISTRY; CHLAMYDOMONAS REINHARDTII; CIRCADIAN RHYTHM; E BOX ELEMENT; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; GENETICS; METABOLISM; MUTATION; PHOSPHORYLATION; PHYSIOLOGY; PROMOTER REGION; REGULATORY SEQUENCE; TEMPERATURE;

ALGAL PROTEINS; ANIMALS; CHLAMYDOMONAS REINHARDTII; CIRCADIAN RHYTHM; E-BOX ELEMENTS; GENE EXPRESSION REGULATION; MUTATION; PHOSPHORYLATION; PROMOTER REGIONS (GENETICS); PROTEIN SUBUNITS; REGULATORY SEQUENCES, NUCLEIC ACID; RNA-BINDING PROTEINS; TEMPERATURE; TRANSCRIPTION, GENETIC;

EID: 53749104408     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.108.118570     Document Type: Article

References (47)

1. Agarwal PK, Agarwal P, Reddy MK, Sopory SK (2006) Role of DREB transcription factors in abiotic and biotic stress tolerance in plants. Plant Cell Rep 25: 1263-1274
2. Antoch MP, Song EJ, Chang AM, Vitaterna MH, Zhao Y, Wilsbacher LD, Sangoram AM, King DP, Pinto LH, Takahashi JS (1997) Functional identification of the mouse circadian clock gene by transgenic BAC rescue. Cell 89: 655-667
3. Blom N, Sicheritz-Ponten T, Gupta R, Gammeltoft S, Brunak S (2004) Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence. Proteomics 4: 1633-1649
4. Bruce VG (1970) The biological clock in Chlamydomonas reinhardtii. J Protozool 17: 328-334
5. Bruce VG (1972) Mutants of the biological clock in Chlamydomonas reinhardtii. Genetics 70: 537-548
6. Bruce VG (1974) Recombinants between clock mutants of Chlamydomonas reinhardtii. Genetics 77: 221-230
7. Brunner M, Merrow M (2008) The green yeast uses its plant-like clock to regulate its animal-like tail. Genes Dev 22: 825-831
8. Diernfellner AC, Schafmeier T, Merrow MW, Brunner M (2005) Molecular mechanism of temperature sensing by the circadian clock of Neurospora crassa. Genes Dev 19: 1968-1973
9. Du Z, Lee JK, Fenn S, Tjhen R, Stroud RM, James TL (2007) X-ray crystallographic and NMR studies of protein-protein and protein-nucleic acid interactions involving the KH domains poly(C)-binding protein-2. RNA 13: 1043-1051
10. Dunlap JC (2006) Proteins in the Neurospora circadian clockworks. J Biol Chem 281: 28489-28493
11. Edwards KD, Lynn JR, Gyula P, Nagy F, Millar AJ (2005) Natural allelic variation in the temperature-compensation mechanisms of the Arabidopsis thaliana circadian clock. Genetics 170: 387-400
12. Farré D, Roset R, Huerta M, Adsuara JE, Roselló L, Albà MM, Messeguer X (2003) Identification of patterns in biological sequences at the ALGGEN server: PROMO and MALGEN. Nucleic Acids Res 31: 3651-3653
13. Fowler SG, Cook D, Thomashow MF (2005) Low temperature induction of Arabidopsis CBF1, 2, and 3 is gated by the circadian clock. Plant Physiol 137: 961-968
14. Fuhrmann M, Hausherr A, Ferbitz L, Schödl T, Heitzer M, Hegemann P (2004) Monitoring dynamic expression of nuclear genes in Chlamydomonas reinhardtii by using a synthetic luciferase reporter gene. Plant Mol Biol 55: 869-881
15. Gould PD, Locke JC, Larue C, Southern MM, Davis SJ, Hanano S, Moyle R, Milich R, Putterill J, Millar AJ, et al (2006) The molecular basis of temperature compensation in the Arabidopsis circadian clock. Plant Cell 18: 1177-1187
16. Harris EH (1989) The Chlamydomonas Sourcebook. Academic Press, San Diego
17. Hastings JW, Sweeney BM (1957) On the mechanism of temperature independence in a biological clock. Proc Natl Acad Sci USA 43: 804-811
18. Hayama M, Okumura Y, Takahashi E, Shimabukuro A, Tamura M, Takeda N, Kubo T, Kido H (2007) Identification and analysis of the promoter region of the type II transmembrane serine protease polyserase-1 and its transcript variants. Biol Chem 388: 853-858
19. Horton RM, Hunt HD, Ho SN, Pullen JK, Pease LR (1989) Engineering hybrid genes without the use of restriction enzymes: gene splicing by overlap extension. Gene 77: 61-68
20. Hunt SM, Elvin M, Crosthwaite SK, Heintzen C (2007) The POS/LOV protein VIVID controls temperature compensation of circadian clock phase and development in Neurospora crassa. Genes Dev 21: 1964-1974
21. Iliev D, Voytsekh O, Mittag M (2006a) The circadian system of Chlamydomonas reinhardtii. Biol Rhythm Res 37: 323-333
22. Iliev D, Voytsekh O, Schmidt EM, Fiedler M, Nykytenko A, Mittag M (2006b) A heteromeric RNA-binding protein is involved in maintaining acrophase and period of the circadian clock. Plant Physiol 142: 797-806
23. Kawazoe R, Hwang S, Herrin DL (2000) Requirement for cytoplasmic protein synthesis during circadian peaks of transcription of chloroplast-encoded genes in Chlamydomonas. Plant Mol Biol 44: 699-709
24. Kiaulehn S, Voytsekh O, Fuhrmann M, Mittag M (2007) The presence of UG-repeat sequences in the 3′-UTRs of reporter luciferase mRNAs mediates circadian expression and determine acrophase in Chlamydomonas reinhardtii. J Biol Rhythms 22: 275-277
25. Kondo T, Strayer CA, Kulkarni RD, Taylor W, Ishiura M, Golden SS, Johnson CH (1993) Circadian rhythms in prokaryotes: luciferase as a reporter of circadian gene expression in cyanobacteria. Proc Natl Acad Sci USA 90: 5672-5676
26. Kucho K, Okamoto K, Tabata S, Fukuzawa H, Ishiura M (2005) Identification of novel clock-controlled genes by cDNA macroarray analysis in Chlamydomonas reinhardtii. Plant Mol Biol 57: 889-906
27. Liu N, Zhong NQ, Wang GL, Li LJ, Liu XL, He YK, Xia GX (2007) Cloning and functional characterization of PpDBF1 gene encoding a DRE-binding transcription factor from Physcomitrella patens. Planta 226: 827-838
28. Liu Y, Garceau NY, Loros JJ, Dunlap JC (1997) Thermally regulated translational control of FRQ mediates aspects of temperature responses in the Neurospora circadian clock. Cell 89: 477-486
29. Lumbreras V, Stevens DR, Purton S (1998) Efficient foreign gene expression in Chlamydomonas reinhardtii mediated by an endogenous intron. Plant J 14: 441-447
30. Matsuo T, Okamoto K, Onai K, Niwa Y, Shimogawara K, Ishiura M (2008) A systematic forward genetic analysis identified components of the Chlamydomonas circadian system. Genes Dev 22: 918-930
31. Mergenhagen D (1984) Circadian clock: genetic characterization of a short period mutant of Chlamydomonas reinhardtii. Eur J Cell Biol 33: 13-18
32. Messeguer X, Escudero R, Farré D, Nuñez O, Martínez J, Albà MM (2002) PROMO: detection of known transcription regulatory elements using species-tailored searches. Bioinformatics 18: 333-334
33. Mittag M (1996) Conserved circadian elements in phylogenetically diverse algae. Proc Natl Acad Sci USA 93: 14401-14404
34. Mittag M, Kiaulehn S, Johnson CH (2005) The circadian clock in Chlamydomonas reinhardtii. What is it for? What is it similar to? Plant Physiol 137: 399-409
35. Miura K, Jin JB, Lee J, Yoo CY, Stirm V, Miura T, Ashworth E, Bressan RA, Yun D-J, Hasegawa PM (2007) SIZ1-mediated sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance in Arabidopsis. Plant Cell 19: 1403-1414
36. Neuhoff V, Philipp K, Zimmer HG, Mesecke S (1979) A simple, versatile, sensitive and volume-independent method for quantitative protein determination which is independent of other external influences. Hoppe Seylers Z Physiol Chem 360: 1657-1670
37. Pittendrigh CS (1954) On temperature independence in the clock system controlling emergence time in Drosophila. Proc Natl Acad Sci USA 40: 1018-1029
38. Rensing L, Ruoff P (2002) Temperature effect on entrainment, phase shifting, and amplitude of circadian clocks and its molecular bases. Chronobiol Int 19: 807-864
39. Sambrook J, Russell DW (2001) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Woodbury, NY
40. Schmidt M, Gessner G, Luff M, Heiland I, Wagner V, Kaminski M, Geimer S, Eitzinger N, Reissenweber T, Voytsekh O, et al (2006) Proteomic analysis of the eyespot of Chlamydomonas reinhardtii provides novel insights into its components and tactic movements. Plant Cell 18: 1908-1930
41. Schulz-Raffelt M, Lodha M, Schroda M (2007) Heat shock factor 1 is a key regulator of the stress response in Chlamydomonas. Plant J 52: 286-295
42. Wagner V, Fiedler M, Markert C, Hippler M, Mittag M (2004) Functional proteomics of circadian expressed proteins from Chlamydomonas reinhardtii. FEBS Lett 559: 129-135
43. Waltenberger H, Schneid C, Grosch JO, Bareiß A, Mittag M (2001) Identification of target mRNAs from C. reinhardtii for the clock-controlled RNA-binding protein Chlamy1. Mol Genet Genomics 265: 180-188
44. Wan F, Anderson DE, Barnitz RA, Snow A, Bidere N, Zheng L, Hegde V, Lam LT, Staudt LM, Levens D, et al (2007) Ribosomal protein S3: a KH domain subunit in NF-kappaB complexes that mediates selective gene regulation. Cell 131: 927-939
45. Wozniak RJ, Boyer ME, Grass JA, Lee Y, Bresnick EH (2007) Context-dependent GATA factor function: combinatorial requirements for transcriptional control in hematopoietic and endothelial cells. J Biol Chem 282: 14665-14674
46. Yu W, Zheng H, Houl JH, Dauwalder B, Hardin PE (2006) PER-dependent rhythms in CLK phosphorylation and E-box binding regulate circadian transcription. Genes Dev 20: 723-733
47. Zhao B, Schneid C, Iliev D, Schmidt EM, Wagner V, Wollnik F, Mittag M (2004) The circadian RNA-binding protein CHLAMY1 represents a novel type heteromer of RNA recognition motif and lysine homology-containing subunits. Eukaryot Cell 3: 815-825