GPU accelerated real-Time multi-functional spectral-domain optical coherence tomography system at 1300nm

Optics Express

Volumn 20, Issue 14, 2012, Pages 14797-14813

  Wang, Yan ^a   Oh, Christian M ^a   Oliveira, Michael C ^a   Islam, M Shahidul ^a   Ortega, Arthur ^a   Park, B Hyle ^a  

^a University of California Riverside   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

OPTICAL TOMOGRAPHY; VISUALIZATION;

CHICKEN MUSCLES; COMPOUND EYE; DIATTENUATION; EXPECTED VALUES; FRAMES PER SECONDS; HORSESHOE CRAB; HYBRID ACQUISITION; IN-VIVO; INTENSITY IMAGES; MICRO-FLUIDIC DEVICES; MOUSE BRAIN; MULTI-FUNCTIONAL; OPTIC AXIS; PHASE RETARDATION; POLARIZING FILMS; REALTIME PROCESSING; SPECTRAL DOMAIN OPTICAL COHERENCE TOMOGRAPHIES; SPECTRAL-DOMAIN OPTICAL COHERENCE TOMOGRAPHY; WAVEPLATES;

PIXELS;

ADIPOSE TISSUE; ANIMAL; ARTICLE; BRACHYURA; BRAIN; CHICKEN; COMPUTER GRAPHICS; COMPUTER SYSTEM; EYE; HISTOLOGY; INSTRUMENTATION; LIGHT; METHODOLOGY; MICROFLUIDIC ANALYSIS; MOUSE; MUSCLE; OPTICAL COHERENCE TOMOGRAPHY; TIME;

ADIPOSE TISSUE; ANIMALS; BRACHYURA; BRAIN; CHICKENS; COMPUTER GRAPHICS; COMPUTER SYSTEMS; EYE; LIGHT; MICE; MICROFLUIDIC ANALYTICAL TECHNIQUES; MUSCLES; TIME FACTORS; TOMOGRAPHY, OPTICAL COHERENCE;

EID: 84863734421     PISSN: None     EISSN: 10944087     Source Type: Journal    
DOI: 10.1364/OE.20.014797     Document Type: Article

References (60)

1. D. Huang, E. A. Swanson, C. P. Lin, J. S. Schuman, W. G. Stinson, W. Chang, M. R. Hee, T. Flotte, K. Gregory, C. A. Puliafito, and J. G. Fujimoto, "Optical Coherence Tomography," Science 254(5035), 1178-1181 (1991).
2. T. Mitsui, "Dynamic range of optical reflectometry with spectral interferometry," Jpn. J. Appl. Phys. 38(Part 1, No. 10), 6133-6137 (1999).
3. R. Leitgeb, C. K. Hitzenberger, and A. F. Fercher, "Performance of fourier domain vs. time domain optical coherence tomography," Opt. Express 11(8), 889-894 (2003).
4. J. F. de Boer, B. Cense, B. H. Park, M. C. Pierce, G. J. Tearney, and B. E. Bouma, "Improved signal-To-noise ratio in spectral-domain compared with time-domain optical coherence tomography," Opt. Lett. 28(21), 2067-2069 (2003).
5. M. A. Choma, M. V. Sarunic, C. H. Yang, and J. A. Izatt, "Sensitivity advantage of swept source and Fourier domain optical coherence tomography," Opt. Express 11(18), 2183-2189 (2003).
6. M. R. Hee, J. A. Izatt, E. A. Swanson, D. Huang, J. S. Schuman, C. P. Lin, C. A. Puliafito, and J. G. Fujimoto, "Optical coherence tomography of the human retina," Arch. Ophthalmol. 113(3), 325-332 (1995).
7. W. Drexler, U. Morgner, R. K. Ghanta, F. X. Kärtner, J. S. Schuman, and J. G. Fujimoto, "Ultrahigh-resolution ophthalmic optical coherence tomography," Nat. Med. 7(4), 502-507 (2001).
8. M. Wojtkowski, R. Leitgeb, A. Kowalczyk, T. Bajraszewski, and A. F. Fercher, "In vivo human retinal imaging by Fourier domain optical coherence tomography," J. Biomed. Opt. 7(3), 457-463 (2002).
9. B. Cense, N. A. Nassif, T. Chen, M. Pierce, S. H. Yun, B. H. Park, B. E. Bouma, G. J. Tearney, and J. F. de Boer, "Ultrahigh-resolution high-speed retinal imaging using spectral-domain optical coherence tomography," Opt. Express 12(11), 2435-2447 (2004).
10. G. Wollstein, J. S. Schuman, L. L. Price, A. Aydin, S. A. Beaton, P. C. Stark, J. G. Fujimoto, and H. Ishikawa, "Optical coherence tomography (OCT) macular and peripapillary retinal nerve fiber layer measurements and automated visual fields," Am. J. Ophthalmol. 138(2), 218-225 (2004).
11. J. Welzel, E. Lankenau, R. Birngruber, and R. Engelhardt, "Optical coherence tomography of the human skin," J. Am. Acad. Dermatol. 37(6), 958-963 (1997).
12. M. C. Pierce, J. Strasswimmer, B. H. Park, B. Cense, and J. F. de Boer, "Advances in optical coherence tomography imaging for dermatology," J. Invest. Dermatol. 123(3), 458-463 (2004).
13. T. Gambichler, G. Moussa, M. Sand, D. Sand, P. Altmeyer, and K. Hoffmann, "Applications of optical coherence tomography in dermatology," J. Dermatol. Sci. 40(2), 85-94 (2005).
14. J. G. Fujimoto, M. E. Brezinski, G. J. Tearney, S. A. Boppart, B. Bouma, M. R. Hee, J. F. Southern, and E. A. Swanson, "Optical biopsy and imaging using optical coherence tomography," Nat. Med. 1(9), 970-972 (1995).
15. A. M. Rollins, S. Yazdanfar, M. Kulkarni, R. Ung-Arunyawee, and J. A. Izatt, "In vivo video rate optical coherence tomography," Opt. Express 3(6), 219-229 (1998).
16. S. A. Boppart, M. E. Brezinski, and J. G. Fujimoto, "Optical coherence tomography imaging in developmental biology," Methods Mol. Biol. 135, 217-233 (2000).
17. P. O. Bagnaninchi, Y. Yang, N. Zghoul, N. Maffulli, R. K. Wang, and A. J. Haj, "Chitosan microchannel scaffolds for tendon tissue engineering characterized using optical coherence tomography," Tissue Eng. 13(2), 323-331 (2007).
18. J. G. Fujimoto, S. A. Boppart, G. J. Tearney, B. E. Bouma, C. Pitris, and M. E. Brezinski, "High resolution in vivo intra-Arterial imaging with optical coherence tomography," Heart 82(2), 128-133 (1999).
19. I. K. Jang, B. E. Bouma, D. H. Kang, S. J. Park, S. W. Park, K. B. Seung, K. B. Choi, M. Shishkov, K. Schlendorf, E. Pomerantsev, S. L. Houser, H. T. Aretz, and G. J. Tearney, "Visualization of coronary atherosclerotic plaques in patients using optical coherence tomography: Comparison with intravascular ultrasound," J. Am. Coll. Cardiol. 39(4), 604-609 (2002).
20. B. E. Bouma, G. J. Tearney, H. Yabushita, M. Shishkov, C. R. Kauffman, D. DeJoseph Gauthier, B. D. MacNeill, S. L. Houser, H. T. Aretz, E. F. Halpern, and I. K. Jang, "Evaluation of intracoronary stenting by intravascular optical coherence tomography," Heart 89(3), 317-320 (2003).
21. W. Luo, D. L. Marks, T. S. Ralston, and S. A. Boppart, "Three-dimensional optical coherence tomography of the embryonic murine cardiovascular system," J. Biomed. Opt. 11(2), 021014 (2006).
22. Z. Chen, T. E. Milner, D. Dave, and J. S. Nelson, "Optical Doppler tomographic imaging of fluid flow velocity in highly scattering media," Opt. Lett. 22(1), 64-66 (1997).
23. J. A. Izatt, M. D. Kulkarni, S. Yazdanfar, J. K. Barton, and A. J. Welch, "In vivo bidirectional color Doppler flow imaging of picoliter blood volumes using optical coherence tomography," Opt. Lett. 22(18), 1439-1441 (1997).
24. T. G. van Leeuwen, M. D. Kulkarni, S. Yazdanfar, A. M. Rollins, and J. A. Izatt, "High-flow-velocity and shear-rate imaging by use of color Doppler optical coherence tomography," Opt. Lett. 24(22), 1584-1586 (1999).
25. Y. Zhao, Z. Chen, C. Saxer, S. Xiang, J. F. de Boer, and J. S. Nelson, "Phase-resolved optical coherence tomography and optical Doppler tomography for imaging blood flow in human skin with fast scanning speed and high velocity sensitivity," Opt. Lett. 25(2), 114-116 (2000).
26. Y. Zhao, Z. Chen, C. Saxer, Q. Shen, S. Xiang, J. F. de Boer, and J. S. Nelson, "Doppler standard deviation imaging for clinical monitoring of in vivo human skin blood flow," Opt. Lett. 25(18), 1358-1360 (2000).
27. B. R. White, M. C. Pierce, N. Nassif, B. Cense, B. H. Park, G. J. Tearney, B. E. Bouma, T. C. Chen, and J. F. de Boer, "In vivo dynamic human retinal blood flow imaging using ultra-high-speed spectral domain optical coherence tomography," Opt. Express 11(25), 3490-3497 (2003).
28. N. A. Nassif, B. Cense, B. H. Park, M. C. Pierce, S. H. Yun, B. Bouma, G. J. Tearney, T. C. Chen, and J. F. de Boer, "In vivo high-resolution video-rate spectral-domain optical coherence tomography of the human retina and optic nerve," Opt. Express 12(3), 367-376 (2004).
29. M. R. Hee, D. Huang, E. A. Swanson, and J. G. Fujimoto, "Polarization-sensitive low-coherence reflectometer for birefringence characterization and ranging," J. Opt. Soc. Am. B 9(6), 903-909 (1992).
30. J. F. de Boer, T. E. Milner, M. J. C. van Gemert, and J. S. Nelson, "Two-dimensional birefringence imaging in biological tissue by polarization-sensitive optical coherence tomography," Opt. Lett. 22(12), 934-936 (1997).
31. J. F. de Boer, T. E. Milner, and J. S. Nelson, "Determination of the depth-resolved Stokes parameters of light backscattered from turbid media by use of polarization-sensitive optical coherence tomography," Opt. Lett. 24(5), 300-302 (1999).
32. B. H. Park, C. Saxer, S. M. Srinivas, J. S. Nelson, and J. F. de Boer, "In vivo burn depth determination by high-speed fiber-based polarization sensitive optical coherence tomography," J. Biomed. Opt. 6(4), 474-479 (2001).
33. S. M. Srinivas, J. F. de Boer, H. Park, K. Keikhanzadeh, H. E. Huang, J. Zhang, W. Q. Jung, Z. Chen, and J. S. Nelson, "Determination of burn depth by polarization-sensitive optical coherence tomography," J. Biomed. Opt. 9(1), 207-212 (2004).
34. M. C. Pierce, R. L. Sheridan, B. Hyle Park, B. Cense, and J. F. de Boer, "Collagen denaturation can be quantified in burned human skin using polarization-sensitive optical coherence tomography," Burns 30(6), 511-517 (2004).
35. B. Cense, T. C. Chen, B. H. Park, M. C. Pierce, and J. F. de Boer, "Invivo depth-resolved birefringence measurements of the human retinal nerve fiber layer by polarization-sensitive optical coherence tomography," Opt. Lett. 27(18), 1610-1612 (2002).
36. B. Cense, T. C. Chen, B. H. Park, M. C. Pierce, and J. F. de Boer, "In vivo birefringence and thickness measurements of the human retinal nerve fiber layer using polarization-sensitive optical coherence tomography," J. Biomed. Opt. 9(1), 121-125 (2004).
37. D. Fried, J. Xie, S. Shafi, J. D. B. Featherstone, T. M. Breunig, and C. Le, "Imaging caries lesions and lesion progression with polarization sensitive optical coherence tomography," J. Biomed. Opt. 7(4), 618-627 (2002).
38. A. Baumgartner, S. Dichtl, C. K. Hitzenberger, H. Sattmann, B. Robl, A. Moritz, A. F. Fercher, and W. Sperr, "Polarization-sensitive optical coherence tomography of dental structures," Caries Res. 34(1), 59-69 (2000).
39. S. K. Nadkarni, M. C. Pierce, B. H. Park, J. F. de Boer, P. Whittaker, B. E. Bouma, J. E. Bressner, E. Halpern, S. L. Houser, and G. J. Tearney, "Measurement of collagen and smooth muscle cell content in atherosclerotic plaques using polarization-sensitive optical coherence tomography," J. Am. Coll. Cardiol. 49(13), 1474-1481 (2007).
40. W. C. Kuo, M. W. Hsiung, J. J. Shyu, N. K. Chou, and P. N. Yang, "Assessment of arterial characteristics in human atherosclerosis by extracting optical properties from polarization-sensitive optical coherence tomography," Opt. Express 16(11), 8117-8125 (2008).
41. M. C. Pierce, B. Hyle Park, B. Cense, and J. F. de Boer, "Simultaneous intensity, birefringence, and flow measurements with high-speed fiber-based optical coherence tomography," Opt. Lett. 27(17), 1534-1536 (2002).
42. H. Ren, Z. Ding, Y. Zhao, J. Miao, J. S. Nelson, and Z. Chen, "Phase-resolved functional optical coherence tomography: Simultaneous imaging of in situ tissue structure, blood flow velocity, standard deviation, birefringence, and Stokes vectors in human skin," Opt. Lett. 27(19), 1702-1704 (2002).
43. B. H. Park, M. C. Pierce, B. Cense, and J. F. de Boer, "Real-Time multi-functional optical coherence tomography," Opt. Express 11(7), 782-793 (2003).
44. B. H. Park, M. C. Pierce, B. Cense, S. Yun, M. Mujat, G. J. Tearney, B. E. Bouma, and J. F. de Boer, "Real-Time fiber-based multi-functional spectral-domain optical coherence tomography at 1.3 μm," Opt. Express 13(11), 3931-3944 (2005).
45. L. An, P. Li, T. T. Shen, and R. Wang, "High speed spectral domain optical coherence tomography for retinal imaging at 500,000 A-lines per second," Biomed. Opt. Express 2(10), 2770-2783 (2011).
46. T. Bonin, G. Franke, M. Hagen-Eggert, P. Koch, and G. Hüttmann, "In vivo Fourier-domain full-field OCT of the human retina with 1.5 million A-lines/s," Opt. Lett. 35(20), 3432-3434 (2010).
47. T. E. Ustun, N. V. Iftimia, R. D. Ferguson, and D. X. Hammer, "Real-Time processing for Fourier domain optical coherence tomography using a field programmable gate array," Rev. Sci. Instrum. 79(11), 114301 (2008).
48. A. E. Desjardins, B. J. Vakoc, M. J. Suter, S. H. Yun, G. J. Tearney, and B. E. Bouma, "Real-Time FPGA processing for high-speed optical frequency domain imaging," IEEE Trans. Med. Imaging 28(9), 1468-1472 (2009).
49. Y. Watanabe and T. Itagaki, "Real-Time display on Fourier domain optical coherence tomography system using a graphics processing unit," J. Biomed. Opt. 14(6), 060506 (2009).
50. S. Van der Jeught, A. Bradu, and A. G. Podoleanu, "Real-Time resampling in Fourier domain optical coherence tomography using a graphics processing unit," J. Biomed. Opt. 15(3), 030511 (2010).
51. K. Zhang and J. U. Kang, "Real-Time 4D signal processing and visualization using graphics processing unit on a regular nonlinear-k Fourier-domain OCT system," Opt. Express 18(11), 11772-11784 (2010).
52. J. Rasakanthan, K. Sugden, and P. H. Tomlins, "Processing and rendering of Fourier domain optical coherence tomography images at a line rate over 524 kHz using a graphics processing unit," J. Biomed. Opt. 16(2), 020505 (2011).
53. NVIDIA, "NVIDIA CUDA Compute Unified Device Architecture Programming Guide Version 4.0," (2011).
54. NVIDIA, "NVIDIA CUDA CUFFT Library Version 4.0," (2011).
55. M. Mujat, B. H. Park, B. Cense, T. C. Chen, and J. F. de Boer, "Autocalibration of spectral-domain optical coherence tomography spectrometers for in vivo quantitative retinal nerve fiber layer birefringence determination," J. Biomed. Opt. 12(4), 041205 (2007).
56. S. H. Yun, G. J. Tearney, B. E. Bouma, B. H. Park, and J. F. de Boer, "High-speed spectral-domain optical coherence tomography at 1.3 um wavelength," Opt. Express 11(26), 3598-3604 (2003).
57. B. H. Park, M. C. Pierce, B. Cense, and J. F. de Boer, "Jones matrix analysis for a polarization-sensitive optical coherence tomography system using fiber-optic components," Opt. Lett. 29(21), 2512-2514 (2004).
58. E. Fischer, "Birefringence and ultrastructure of muscle," Ann. N. Y. Acad. Sci. 47(6 Art 6), 783-797 (1947).
59. R. W. Cox, ""Hibernoma": The lipoma of immature adipose tissue," J. Pathol. Bacteriol. 68(2), 511-518 (1954).
60. M. Bonesi, D. Y. Churmakov, L. J. Ritchie, and I. V. Meglinski, "Turbulence monitoring with Doppler optical coherence tomography," Laser Phys. Lett. 4(4), 304-307 (2007).