-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul S, Gish W, Miller W, Myers E, Lipman D. Basic local alignment search tool. J Mol Biol 1990, 215:403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.1
Gish, W.2
Miller, W.3
Myers, E.4
Lipman, D.5
-
2
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994, 22:4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
3
-
-
0000122573
-
PHYLIP - Phylogeny Inference Package (Version 3.2)
-
Felsenstein J. PHYLIP - Phylogeny Inference Package (Version 3.2). Cladistics 1989, 5:164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
4
-
-
0030683599
-
PAML: a program package for phylogenetic analysis by maximum likelihood
-
Yang Z. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Bio Sci 1997, 13:555-556.
-
(1997)
Comput Appl Bio Sci
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
5
-
-
34547803197
-
PAML 4: a program package for phylogenetic analysis by maximum likelihood
-
10.1093/molbev/msm088, 17483113
-
Yang Z. PAML 4: a program package for phylogenetic analysis by maximum likelihood. Mol Biol Evol 2007, 24:1586-1591. 10.1093/molbev/msm088, 17483113.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
6
-
-
0037046558
-
Creating a bioinformatics nation
-
10.1038/417119a, 12000935
-
Stein L. Creating a bioinformatics nation. Nature 2002, 417(6885):119-120. 10.1038/417119a, 12000935.
-
(2002)
Nature
, vol.417
, Issue.6885
, pp. 119-120
-
-
Stein, L.1
-
7
-
-
67349132836
-
Data sharing in genomics - re-shaping scientific practice
-
10.1038/nrg2573, 2672783, 19308065
-
Kaye J, Heeney C, Hawkins N, de Vries J, Boddington P. Data sharing in genomics - re-shaping scientific practice. Nat Rev Genet 2009, 10:331-335. 10.1038/nrg2573, 2672783, 19308065.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 331-335
-
-
Kaye, J.1
Heeney, C.2
Hawkins, N.3
de Vries, J.4
Boddington, P.5
-
8
-
-
33747833111
-
Taverna: a tool for building and running workflows of services
-
Hull D, Wolstencroft K, Stevens R, Goble C, Pocock M, Li P, Oinn T. Taverna: a tool for building and running workflows of services. Nucleic Acids Res 2006, 34(Web Server issue):729-732.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.WEB SERVER ISSUE
, pp. 729-732
-
-
Hull, D.1
Wolstencroft, K.2
Stevens, R.3
Goble, C.4
Pocock, M.5
Li, P.6
Oinn, T.7
-
9
-
-
77955801615
-
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
10.1186/gb-2010-11-8-r86, 2945788, 20738864
-
Goecks J, Nekrutenko A, Taylor J, Team TG. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol 2010, 11:R86. 10.1186/gb-2010-11-8-r86, 2945788, 20738864.
-
(2010)
Genome Biol
, vol.11
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
Team, T.G.4
-
10
-
-
29644434815
-
Pegasus: a framework for mapping complex scientific workflows onto distributed systems
-
Deelman E, Singh G, Su M, Blythe J, Gil Y, Kesselman C, Mehta G, Vahi K, Berriman G, Good J, Laity A, Jacob J, Katz D. Pegasus: a framework for mapping complex scientific workflows onto distributed systems. Sci Programming 2005, 13:219-237.
-
(2005)
Sci Programming
, vol.13
, pp. 219-237
-
-
Deelman, E.1
Singh, G.2
Su, M.3
Blythe, J.4
Gil, Y.5
Kesselman, C.6
Mehta, G.7
Vahi, K.8
Berriman, G.9
Good, J.10
Laity, A.11
Jacob, J.12
Katz, D.13
-
11
-
-
18244376653
-
Exploring Williams-Beuren syndrome using myGrid
-
10.1093/bioinformatics/bth944, 15262813
-
Stevens R, Tipney H, Wroe C, Oinn T, Senger M, Lord P, Goble C, Brass A, Tassabehji M. Exploring Williams-Beuren syndrome using myGrid. Bioinformatics 2004, 20(Suppl 1):i303-i310. 10.1093/bioinformatics/bth944, 15262813.
-
(2004)
Bioinformatics
, vol.20
, Issue.SUPPL. 1
-
-
Stevens, R.1
Tipney, H.2
Wroe, C.3
Oinn, T.4
Senger, M.5
Lord, P.6
Goble, C.7
Brass, A.8
Tassabehji, M.9
-
12
-
-
77954199176
-
Ergatis: a web interface and scalable software system for bioinformatics workflows
-
10.1093/bioinformatics/btq167, 2881353, 20413634
-
Orvis J, Crabtree J, Galens K, Gussman A, Inman J, Lee E, Nampally S, Riley D, Sundaram J, Felix V, Whitty B, Mahurkar A, Wortman J, White O, Angiuoli S. Ergatis: a web interface and scalable software system for bioinformatics workflows. Bioinformatics 2010, 26(12):1488-1492. 10.1093/bioinformatics/btq167, 2881353, 20413634.
-
(2010)
Bioinformatics
, vol.26
, Issue.12
, pp. 1488-1492
-
-
Orvis, J.1
Crabtree, J.2
Galens, K.3
Gussman, A.4
Inman, J.5
Lee, E.6
Nampally, S.7
Riley, D.8
Sundaram, J.9
Felix, V.10
Whitty, B.11
Mahurkar, A.12
Wortman, J.13
White, O.14
Angiuoli, S.15
-
13
-
-
77954275246
-
MyExperiment: a repository and social network for the sharing of bioinformatics workflows
-
2896080, 20501605
-
Goble CA, Bhagat J, Aleksejevs S, Cruickshank D, Michaelides D, Newman D, Borkum M, Bechhofer S, Roos M, Li P, Roure DD. myExperiment: a repository and social network for the sharing of bioinformatics workflows. Nucleic Acids Res 2010, 38(2):W677-W682. 2896080, 20501605.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.2
-
-
Goble, C.A.1
Bhagat, J.2
Aleksejevs, S.3
Cruickshank, D.4
Michaelides, D.5
Newman, D.6
Borkum, M.7
Bechhofer, S.8
Roos, M.9
Li, P.10
Roure, D.D.11
-
14
-
-
5444235762
-
Kepler: an extensible system for design and execution of scientific workflows
-
Santorini Island Greece
-
Altintas I, Berkley C, Jaeger E, Jones M, Ludascher B, Mock S. Kepler: an extensible system for design and execution of scientific workflows. Proceedings of the 16th International Conference on Scientific and Statistical Database Management 2004, 423-424. Santorini Island Greece.
-
(2004)
Proceedings of the 16th International Conference on Scientific and Statistical Database Management
, pp. 423-424
-
-
Altintas, I.1
Berkley, C.2
Jaeger, E.3
Jones, M.4
Ludascher, B.5
Mock, S.6
-
15
-
-
59849095285
-
Workflows and e-Science: An overview of workflow system features and capabilities
-
Deelman E, Gannon D, Shields M, Taylor I. Workflows and e-Science: An overview of workflow system features and capabilities. Future Gener Comput Syst 2009, 25(5):528-540.
-
(2009)
Future Gener Comput Syst
, vol.25
, Issue.5
, pp. 528-540
-
-
Deelman, E.1
Gannon, D.2
Shields, M.3
Taylor, I.4
-
16
-
-
28744458859
-
Bioconductor: open software development for computational biology and bioinformatics
-
Gentleman R, Carey V, Bates D, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini A, Sawitzki G, Smith C, Smyth G, Tierney L, Yang J, Zhang J. Bioconductor: open software development for computational biology and bioinformatics. Genome Res 2004, 5:R80.
-
(2004)
Genome Res
, vol.5
-
-
Gentleman, R.1
Carey, V.2
Bates, D.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.9
Gentry, J.10
Hornik, K.11
Hothorn, T.12
Huber, W.13
Iacus, S.14
Irizarry, R.15
Leisch, F.16
Li, C.17
Maechler, M.18
Rossini, A.19
Sawitzki, G.20
Smith, C.21
Smyth, G.22
Tierney, L.23
Yang, J.24
Zhang, J.25
more..
-
17
-
-
33748762488
-
Computer programs for population genetics data analysis: a survival guide
-
10.1038/nrg1904, 16924258
-
Excoffier L, Heckel G. Computer programs for population genetics data analysis: a survival guide. Nat Rev Genet 2006, 7(10):745-758. 10.1038/nrg1904, 16924258.
-
(2006)
Nat Rev Genet
, vol.7
, Issue.10
, pp. 745-758
-
-
Excoffier, L.1
Heckel, G.2
-
18
-
-
38649095599
-
An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data
-
10.1021/pr700758r, 18173218
-
Mueller L, Brusniak M, Mani D, Aebersold R. An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data. J Proteome Res 2008, 7:51-61. 10.1021/pr700758r, 18173218.
-
(2008)
J Proteome Res
, vol.7
, pp. 51-61
-
-
Mueller, L.1
Brusniak, M.2
Mani, D.3
Aebersold, R.4
-
19
-
-
81055127876
-
Phred-Phrap package to analyses tools: a pipeline to facilitate population genetics re-sequencing studies
-
Machado M, Magalhaes WCS, Sene A, Araujo B, Faria-Campos A, Chanock S, Scott L, Oliveira G, Tarazona-Santos E, Rodrigues MR. Phred-Phrap package to analyses tools: a pipeline to facilitate population genetics re-sequencing studies. Invest Genet 2011, 2:3.
-
(2011)
Invest Genet
, vol.2
, pp. 3
-
-
Machado, M.1
Magalhaes, W.C.S.2
Sene, A.3
Araujo, B.4
Faria-Campos, A.5
Chanock, S.6
Scott, L.7
Oliveira, G.8
Tarazona-Santos, E.9
Rodrigues, M.R.10
-
20
-
-
0041817568
-
Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies
-
1462648, 12930761
-
Falush D, Stephens M, Pritchard J. Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 2003, 164:1567-1587. 1462648, 12930761.
-
(2003)
Genetics
, vol.164
, pp. 1567-1587
-
-
Falush, D.1
Stephens, M.2
Pritchard, J.3
-
21
-
-
68549104404
-
The sequence alignment/map (SAM) format and SAMtools
-
10.1093/bioinformatics/btp352, 2723002, 19505943, 1000 Genome Project Data Processing Subgroup
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, . 1000 Genome Project Data Processing Subgroup The sequence alignment/map (SAM) format and SAMtools. Bioinformatics 2009, 25:2078-2079. 10.1093/bioinformatics/btp352, 2723002, 19505943, 1000 Genome Project Data Processing Subgroup.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
22
-
-
70450267525
-
Magallanes: a web services discovery and automatic workflow composition tool
-
10.1186/1471-2105-10-1, 2631520, 19118496
-
Rios J, Karlsson J, Trelles O. Magallanes: a web services discovery and automatic workflow composition tool. BMC Bioinformatics 2009, 10:1-12. 10.1186/1471-2105-10-1, 2631520, 19118496.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 1-12
-
-
Rios, J.1
Karlsson, J.2
Trelles, O.3
-
23
-
-
70449449024
-
Bio-jETI: a framework for semantic-based service composition
-
10.1186/1471-2105-10-1, 2631520, 19118496
-
Lamprecht A, Margaria T, Steffen B. Bio-jETI: a framework for semantic-based service composition. BMC Bioinformatics 2009, 10:1-19. 10.1186/1471-2105-10-1, 2631520, 19118496.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 1-19
-
-
Lamprecht, A.1
Margaria, T.2
Steffen, B.3
-
24
-
-
24144466894
-
Bringing Semantics to Web Services: the OWL-S approach
-
Martin D, Paolucci M, McIlraith S, Burstein M, McDermott D, McGuinness D, Parsia B, Payne T, Sabou M, Solanki M. Bringing Semantics to Web Services: the OWL-S approach. Lecture Notes Comput Sci 2005, 3387:26-42.
-
(2005)
Lecture Notes Comput Sci
, vol.3387
, pp. 26-42
-
-
Martin, D.1
Paolucci, M.2
McIlraith, S.3
Burstein, M.4
McDermott, D.5
McGuinness, D.6
Parsia, B.7
Payne, T.8
Sabou, M.9
Solanki, M.10
-
25
-
-
0003791651
-
Web Services Description Language (WSDL) 1.1.
-
The World Wide Web Consortium
-
The World Wide Web Consortium Web Services Description Language (WSDL) 1.1. 2001, The World Wide Web Consortium., http://[http://www.w3.org/TR/wsdl]
-
(2001)
-
-
|