PhyloTempo: A set of R scripts for assessing and visualizing temporal clustering in genealogies inferred from serially sampled viral sequences

Evolutionary Bioinformatics

Volumn 2012, Issue 8, 2012, Pages 261-269

  Norström, Melissa M ^a   Prosperi, Mattia C F ^b   Gray, Rebecca R ^c   Karlsson, Annika C ^a   Salemi, Marco ^b  

^a KAROLINSKA UNIVERSITY HOSPITAL   (Sweden)

^b UNIVERSITY OF FLORIDA COLLEGE OF MEDICINE   (United States)

^c UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

Clustering; Coalescence; Comparative methods; Fast evolving viruses; Longitudinal samples; Phylodynamics; Phylogenetics; Positive selection; Software

Indexed keywords

ACCESS TO INFORMATION; ARTICLE; CLUSTER ANALYSIS; COMPUTER INTERFACE; COMPUTER LANGUAGE; COMPUTER PROGRAM; GENE CLUSTER; GENETIC CONSERVATION; HUMAN IMMUNODEFICIENCY VIRUS; INTERMETHOD COMPARISON; INTERNET; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PHYLOGENY; SIMIAN IMMUNODEFICIENCY VIRUS; VIRUS GENE;

SIMIAN IMMUNODEFICIENCY VIRUS;

EID: 84863620681     PISSN: None     EISSN: 11769343     Source Type: Journal    
DOI: 10.4137/EBO.S9738     Document Type: Article

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