Clustering of resting state networks

PLoS ONE

Volumn 7, Issue 7, 2012, Pages

  Lee, Megan H ^a   Hacker, Carl D ^a   Snyder, Abraham Z ^a   Corbetta, Maurizio ^a   Zhang, Dongyang ^a   Leuthardt, Eric C ^a   Shimony, Joshua S ^a  

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; ALGORITHM; ARTICLE; BASAL GANGLION; BRAIN FUNCTION; BRAIN REGION; CONTROLLED STUDY; FEMALE; FUNCTIONAL MAGNETIC RESONANCE IMAGING; FUZZY SYSTEM; GRAY MATTER; HUMAN; HUMAN EXPERIMENT; INSULA; MALE; NORMAL HUMAN; POSTCENTRAL GYRUS; STEADY STATE; TASK PERFORMANCE; TEMPORAL LOBE; THALAMUS;

ADOLESCENT; ADULT; ALGORITHMS; BRAIN MAPPING; CEREBRAL CORTEX; CLUSTER ANALYSIS; FEMALE; FUZZY LOGIC; HUMANS; MAGNETIC RESONANCE IMAGING; MALE; MODELS, NEUROLOGICAL; NERVE NET; YOUNG ADULT;

EID: 84863616382     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0040370     Document Type: Article

References (63)

1. Biswal B, Yetkin FZ, Haughton VM, Hyde JS, (1995) Functional connectivity in the motor cortex of resting human brain using echo-planar MRI. Magn Reson Med 34: 537-541.
2. Raichle ME, MacLeod AM, Snyder AZ, Powers WJ, Gusnard DA, et al. (2001) A default mode of brain function. Proc Natl Acad Sci U S A 98: 676-682.
3. Greicius MD, Krasnow B, Reiss AL, Menon V, (2003) Functional connectivity in the resting brain: a network analysis of the default mode hypothesis. Proc Natl Acad Sci U S A 100: 253-258.
4. Beckmann CF, DeLuca M, Devlin JT, Smith SM, (2005) Investigations into resting-state connectivity using independent component analysis. Philos Trans R Soc Lond B Biol Sci 360: 1001-1013.
5. Damoiseaux JS, Rombouts SA, Barkhof F, Scheltens P, Stam CJ, et al. (2006) Consistent resting-state networks across healthy subjects. Proc Natl Acad Sci U S A 103: 13848-13853.
6. De Luca M, Beckmann CF, De Stefano N, Matthews PM, Smith SM, (2006) fMRI resting state networks define distinct modes of long-distance interactions in the human brain. Neuroimage 29: 1359-1367.
7. Fox MD, Corbetta M, Snyder AZ, Vincent JL, Raichle ME, (2006) Spontaneous neuronal activity distinguishes human dorsal and ventral attention systems. Proc Natl Acad Sci U S A 103: 10046-10051.
8. Seeley WW, Menon V, Schatzberg AF, Keller J, Glover GH, et al. (2007) Dissociable intrinsic connectivity networks for salience processing and executive control. J Neurosci 27: 2349-2356.
9. Dosenbach NU, Fair DA, Miezin FM, Cohen AL, Wenger KK, et al. (2007) Distinct brain networks for adaptive and stable task control in humans. Proc Natl Acad Sci U S A 104: 11073-11078.
10. Power JD, Cohen AL, Nelson SM, Wig GS, Barnes KA, et al. (2011) Functional network organization of the human brain. Neuron 72: 665-678.
11. Vincent JL, Kahn I, Snyder AZ, Raichle ME, Buckner RL, (2008) Evidence for a frontoparietal control system revealed by intrinsic functional connectivity. J Neurophysiol 100: 3328-3342.
12. Doucet G, Naveau M, Petit L, Delcroix N, Zago L, et al. (2011) Brain activity at rest: a multiscale hierarchical functional organization. J Neurophysiol 105: 2753-2763.
13. Yeo BT, Krienen FM, Sepulcre J, Sabuncu MR, Lashkari D, et al. (2011) The organization of the human cerebral cortex estimated by intrinsic functional connectivity. J Neurophysiol 106: 1125-1165.
14. Fox MD, Snyder AZ, Vincent JL, Corbetta M, Van Essen DC, et al. (2005) The human brain is intrinsically organized into dynamic, anticorrelated functional networks. Proc Natl Acad Sci U S A 102: 9673-9678.
15. Golland Y, Golland P, Bentin S, Malach R, (2008) Data-driven clustering reveals a fundamental subdivision of the human cortex into two global systems. Neuropsychologia 46: 540-553.
16. Rosazza C, Minati L, (2011) Resting-state brain networks: literature review and clinical applications. Neurol Sci 32: 773-785.
17. van den Heuvel MP, Hulshoff Pol HE, (2010) Exploring the brain network: a review on resting-state fMRI functional connectivity. Eur Neuropsychopharmacol 20: 519-534.
18. Greicius MD, Srivastava G, Reiss AL, Menon V, (2004) Default-mode network activity distinguishes Alzheimer's disease from healthy aging: evidence from functional MRI. Proc Natl Acad Sci U S A 101: 4637-4642.
19. Rombouts SA, Barkhof F, Goekoop R, Stam CJ, Scheltens P, (2005) Altered resting state networks in mild cognitive impairment and mild Alzheimer's disease: an fMRI study. Hum Brain Mapp 26: 231-239.
20. Broyd SJ, Demanuele C, Debener S, Helps SK, James CJ, et al. (2009) Default-mode brain dysfunction in mental disorders: a systematic review. Neurosci Biobehav Rev 33: 279-296.
21. Greicius MD, Flores BH, Menon V, Glover GH, Solvason HB, et al. (2007) Resting-state functional connectivity in major depression: abnormally increased contributions from subgenual cingulate cortex and thalamus. Biol Psychiatry 62: 429-437.
22. Bezdek JC, (1981) Pattern Recognition with Fuzzy Objective Function Algorithms. New York, New York: Plenium Press.
23. Spreng RN, Stevens WD, Chamberlain JP, Gilmore AW, Schacter DL, (2010) Default network activity, coupled with the frontoparietal control network, supports goal-directed cognition. Neuroimage 53: 303-317.
24. Gao W, Lin W, (2012) Frontal parietal control network regulates the anti-correlated default and dorsal attention networks. Hum Brain Mapp 33: 192-202.
25. Yarkoni T, Poldrack RA, Nichols TE, Van Essen DC, Wager TD, (2011) Large-scale automated synthesis of human functional neuroimaging data. Nat Methods 8: 665-670.
26. Liao W, Ding J, Marinazzo D, Xu Q, Wang Z, et al. (2011) Small-world directed networks in the human brain: multivariate Granger causality analysis of resting-state fMRI. Neuroimage 54: 2683-2694.
27. Li R, Chen K, Fleisher AS, Reiman EM, Yao L, et al. (2011) Large-scale directional connections among multi resting-state neural networks in human brain: a functional MRI and Bayesian network modeling study. Neuroimage 56: 1035-1042.
28. Deco G, Corbetta M, (2011) The dynamical balance of the brain at rest. Neuroscientist 17: 107-123.
29. Honey CJ, Sporns O, Cammoun L, Gigandet X, Thiran JP, et al. (2009) Predicting human resting-state functional connectivity from structural connectivity. Proc Natl Acad Sci U S A 106: 2035-2040.
30. Brookes MJ, Woolrich M, Luckhoo H, Price D, Hale JR, et al. (2011) Investigating the electrophysiological basis of resting state networks using magnetoencephalography. Proc Natl Acad Sci U S A 108: 16783-16788.
31. de Pasquale F, Della Penna S, Snyder AZ, Lewis C, Mantini D, et al. (2010) Temporal dynamics of spontaneous MEG activity in brain networks. Proc Natl Acad Sci U S A 107: 6040-6045.
32. Fornito A, Zalesky A, Bassett DS, Meunier D, Ellison-Wright I, et al. (2011) Genetic influences on cost-efficient organization of human cortical functional networks. J Neurosci 31: 3261-3270.
33. Fair DA, Cohen AL, Power JD, Dosenbach NU, Church JA, et al. (2009) Functional brain networks develop from a "local to distributed" organization. PLoS Comput Biol 5: e1000381.
34. Albert NB, Robertson EM, Miall RC, (2009) The resting human brain and motor learning. Curr Biol 19: 1023-1027.
35. Durrant S, Lewis PA, (2009) Memory consolidation: tracking transfer with functional connectivity. Curr Biol 19: R860-862.
36. Mazoyer B, Zago L, Mellet E, Bricogne S, Etard O, et al. (2001) Cortical networks for working memory and executive functions sustain the conscious resting state in man. Brain Res Bull 54: 287-298.
37. Shulman GL, Corbetta M, Buckner RL, Raichle ME, Fiez JA, et al. (1997) Top-down modulation of early sensory cortex. Cereb Cortex 7: 193-206.
38. Corbetta M, Patel G, Shulman GL, (2008) The reorienting system of the human brain: from environment to theory of mind. Neuron 58: 306-324.
39. van den Heuvel M, Mandl R, Hulshoff Pol H, (2008) Normalized cut group clustering of resting-state FMRI data. PLoS One 3: e2001.
40. Price CJ, (2000) The anatomy of language: contributions from functional neuroimaging. J Anat 197 Pt 3: 335-359.
41. Damasio H, Tranel D, Grabowski T, Adolphs R, Damasio A, (2004) Neural systems behind word and concept retrieval. Cognition 92: 179-229.
42. Kumral E, Evyapan D, Balkir K, (1999) Acute caudate vascular lesions. Stroke 30: 100-108.
43. Caplan LR, Schmahmann JD, Kase CS, Feldmann E, Baquis G, et al. (1990) Caudate infarcts. Arch Neurol 47: 133-143.
44. Damasio AR, Damasio H, Rizzo M, Varney N, Gersh F, (1982) Aphasia with nonhemorrhagic lesions in the basal ganglia and internal capsule. Arch Neurol 39: 15-24.
45. Wilson SM, Molnar-Szakacs I, Iacoboni M, (2008) Beyond superior temporal cortex: intersubject correlations in narrative speech comprehension. Cereb Cortex 18: 230-242.
46. Shulman GL, Astafiev SV, Franke D, Pope DL, Snyder AZ, et al. (2009) Interaction of stimulus-driven reorienting and expectation in ventral and dorsal frontoparietal and basal ganglia-cortical networks. J Neurosci 29: 4392-4407.
47. Zhang D, Snyder AZ, Fox MD, Sansbury MW, Shimony JS, et al. (2008) Intrinsic functional relations between human cerebral cortex and thalamus. J Neurophysiol 100: 1740-1748.
48. Zhang D, Snyder AZ, Shimony JS, Fox MD, Raichle ME, (2010) Noninvasive functional and structural connectivity mapping of the human thalamocortical system. Cereb Cortex 20: 1187-1194.
49. Smith SM, Fox PT, Miller KL, Glahn DC, Fox PM, et al. (2009) Correspondence of the brain's functional architecture during activation and rest. Proc Natl Acad Sci U S A 106: 13040-13045.
50. Cauda F, D'Agata F, Sacco K, Duca S, Geminiani G, et al. (2011) Functional connectivity of the insula in the resting brain. Neuroimage 55: 8-23.
51. Deen B, Pitskel NB, Pelphrey KA, (2011) Three systems of insular functional connectivity identified with cluster analysis. Cereb Cortex 21: 1498-1506.
52. Nanetti L, Cerliani L, Gazzola V, Renken R, Keysers C, (2009) Group analyses of connectivity-based cortical parcellation using repeated k-means clustering. Neuroimage 47: 1666-1677.
53. Eickhoff SB, Bzdok D, Laird AR, Roski C, Caspers S, et al. (2011) Co-activation patterns distinguish cortical modules, their connectivity and functional differentiation. Neuroimage 57: 938-949.
54. Klein JC, Behrens TE, Robson MD, Mackay CE, Higham DJ, et al. (2007) Connectivity-based parcellation of human cortex using diffusion MRI: Establishing reproducibility, validity and observer independence in BA 44/45 and SMA/pre-SMA. Neuroimage 34: 204-211.
55. Kim JH, Lee JM, Jo HJ, Kim SH, Lee JH, et al. (2010) Defining functional SMA and pre-SMA subregions in human MFC using resting state fMRI: functional connectivity-based parcellation method. Neuroimage 49: 2375-2386.
56. Fox MD, Snyder AZ, Vincent JL, Raichle ME, (2007) Intrinsic fluctuations within cortical systems account for intertrial variability in human behavior. Neuron 56: 171-184.
57. Ojemann JG, Akbudak E, Snyder AZ, McKinstry RC, Raichle ME, et al. (1997) Anatomic localization and quantitative analysis of gradient refocused echo-planar fMRI susceptibility artifacts. Neuroimage 6: 156-167.
58. Van Essen DC, (2005) A Population-Average, Landmark- and Surface-based (PALS) atlas of human cerebral cortex. Neuroimage 28: 635-662.
59. Power JD, Barnes KA, Snyder AZ, Schlaggar BL, Petersen SE, (2012) Spurious but systematic correlations in functional connectivity MRI networks arise from subject motion. Neuroimage 59: 2142-2154.
60. Smyser CD, Inder TE, Shimony JS, Hill JE, Degnan AJ, et al. (2010) Longitudinal analysis of neural network development in preterm infants. Cereb Cortex 20: 2852-2862.
61. Dale AM, Fischl B, Sereno MI, (1999) Cortical surface-based analysis. I. Segmentation and surface reconstruction. Neuroimage 9: 179-194.
62. Pal NR, Bezdek JC, (1995) On Cluster Validity for the Fuzzy C-Means Model. Ieee Transactions on Fuzzy Systems 3: 370-379.
63. Talairach J, Tournoux P, (1988) Coplanar Stereotaxic Atlas of the Human Brain. New York, New York: Thieme Medical.