Complete genome sequence of the giant Pseudomonas phage Lu11

Journal of Virology

Volumn 86, Issue 11, 2012, Pages 6369-6370

  Adriaenssens, E M ^a,b   Mattheus, W ^a   Cornelissen, A ^a   Shaburova, O ^c   Krylov, V N ^c   Kropinski, A M ^d,e   Lavigne, R ^a  

^a UNIVERSITY OF LEUVEN   (Belgium)

^b INSTITUTE FOR AGRICULTURAL AND FISHERIES RESEARCH ILVO   (Belgium)

^c MECHNIKOV RESEARCH INSTITUTE FOR VACCINES AND SERA   (Russian Federation)

^d PUBLIC HEALTH AGENCY OF CANADA   (Canada)

^e UNIVERSITY OF GUELPH   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA; GENOMIC DNA; VIRUS DNA;

ARTICLE; DNA REPLICATION GENE; GENE AMPLIFICATION; GENE SEQUENCE; GENOME ANALYSIS; INTERMETHOD COMPARISON; NONHUMAN; NUCLEOTIDE METABOLISM GENE; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; PSEUDOMONAS; PSEUDOMONAS BACTERIOPHAGE LU11; PSEUDOMONAS PHAGE; SEQUENCE ANALYSIS; VIRUS GENE; VIRUS GENOME; VIRUS ISOLATION; BACTERIOPHAGE; CHEMISTRY; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; PHYLOGENY; PSEUDOMONAS PUTIDA; RALSTONIA; SEQUENCE HOMOLOGY; SYNTENY; VIROLOGY;

MYOVIRIDAE; PSEUDOMONAS; RALSTONIA;

DNA, VIRAL; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; MYOVIRIDAE; OPEN READING FRAMES; PHYLOGENY; PSEUDOMONAS PHAGES; PSEUDOMONAS PUTIDA; RALSTONIA; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; SYNTENY;

EID: 84863591430     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.00641-12     Document Type: Article

References (14)

1. Altschul SF, Gertz EM, Agarwala R, Schaffer AA, Yu YK. 2009. PSIBLAST pseudocounts and the minimum description length principle. Nucleic Acids Res. 37:815-824.
2. Aziz RK, et al. 2008. The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9:75.
3. Bailey TL, et al. 2009. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 37:W202-W208.
4. Burkal'tseva MV, et al. 2002. Phenogenetic characterization of a group of giant phiKZ-like bacteriophages of Pseudomonas aeruginosa. Russ. J. Genet. 38:1242-1250.
5. Dela Cruz DM. 2004. Master's thesis. University of Santo Tomás, Espana, Manila, Philippines.
6. Krylov VN, et al. 2004. Comparisons of the genomes of new giant phages isolated from environmental Pseudomonas aeruginosa strains of different regions. Russ.J. Genet. 40:363-368.
7. Krylov VN, Dela Cruz DM, Hertveldt K, Ackermann HW. 2007. "phiKZ-like viruses," a proposed new genus of myovirus bacteriophages. Arch. Virol. 152:1955-1959.
8. Laslett D, Canback B. 2004. ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res. 32:11-16.
9. Marchler-Bauer A, et al. 2011. CDD: a conserved domain database for the functional annotation of proteins. Nucleic Acids Res. 39:D225-D229.
10. Punta M, et al. 2012. The Pfam protein families database. Nucleic Acids Res. 40:D290-D301.
11. Sambrook J, Russell D. 2001. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
12. Schattner P, Brooks AN, Lowe TM. 2005. The tRNAscan-SE, snoscan and snoGPS Web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res. 33:W686-W689.
13. Shaburova OV, et al. 2006. Comparison of new giant bacteriophages OBP and Lu11 of soil pseudomonads with bacteriophages of phiKZ-supergroup of Pseudomonas aeruginosa. Genetika 42:1065-1074. (In Russian).
14. Zafar N, Mazumder R, Seto D. 2002. CoreGenes: a computational tool for identifying and cataloging "core" genes in a set of small genomes. BMC Bioinformatics 3:12.