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Volumn 45, Issue 11, 2012, Pages 1947-1951

Modeling sickle hemoglobin fibers as one chain of coarse-grained particles

Author keywords

Depletion forces; HbS fiber model; Langevin thermostat; Van der Waals forces; Zippering mechanisms

Indexed keywords

BIOMECHANICAL PROPERTIES; COARSE GRAINED PARTICLES; DEPLETION FORCE; FIBER BUNDLES; FIBER MODEL; FIBER-FIBER INTERACTIONS; GEL FORMATION; LANGEVIN; MATERIAL PROPERTY; MECHANICAL BEHAVIOR; ONE CHAIN; RED BLOOD CELL; SICKLE CELL DISEASE; SINGLE-POINT MUTATION; SOLVENT FREE; TETRAMERS;

EID: 84863569242     PISSN: 00219290     EISSN: 18732380     Source Type: Journal    
DOI: 10.1016/j.jbiomech.2012.05.016     Document Type: Article
Times cited : (28)

References (30)
  • 1
    • 80052481398 scopus 로고    scopus 로고
    • The growth of sickle hemoglobin polymers
    • Aprelev A., Liu Z., Ferrone Frank A. The growth of sickle hemoglobin polymers. Biophysical Journal 2011, 101:885-891.
    • (2011) Biophysical Journal , vol.101 , pp. 885-891
    • Aprelev, A.1    Liu, Z.2    Ferrone, F.A.3
  • 2
    • 70350233625 scopus 로고    scopus 로고
    • Hierarchical coarse-graining strategy for protein-membrane systems to access mesoscopic scales
    • Ayton G.S., Lyman E, Voth G.A. Hierarchical coarse-graining strategy for protein-membrane systems to access mesoscopic scales. Faraday Discussions 2010, 144:347-357.
    • (2010) Faraday Discussions , vol.144 , pp. 347-357
    • Ayton, G.S.1    Lyman, E.2    Voth, G.A.3
  • 3
    • 36649006847 scopus 로고    scopus 로고
    • Systematic coarse graining of biomolecular and soft-matter systems
    • Ayton G.S., Noid W.G., Voth G.A. Systematic coarse graining of biomolecular and soft-matter systems. MRS Bulletin 2007, 32:929-934.
    • (2007) MRS Bulletin , vol.32 , pp. 929-934
    • Ayton, G.S.1    Noid, W.G.2    Voth, G.A.3
  • 5
    • 0028044585 scopus 로고
    • Fragility and structure of hemoglobin S fibers and gels and their consequences for gelation kinetics and rheology
    • Briehl R.W., Guzman A.E. Fragility and structure of hemoglobin S fibers and gels and their consequences for gelation kinetics and rheology. Blood 1994, 83:573-579.
    • (1994) Blood , vol.83 , pp. 573-579
    • Briehl, R.W.1    Guzman, A.E.2
  • 6
    • 60949107887 scopus 로고    scopus 로고
    • Deformation and failure of protein materials in physiologically extreme conditions and disease
    • Buehler M.J., Yung Y.C. Deformation and failure of protein materials in physiologically extreme conditions and disease. Nature Materials 2009, 8:175-188.
    • (2009) Nature Materials , vol.8 , pp. 175-188
    • Buehler, M.J.1    Yung, Y.C.2
  • 8
    • 0037119011 scopus 로고    scopus 로고
    • Langevin equation method for the rotational Brownian motion and orientational relaxation in liquids
    • Coffey W.T., Kalmykov Y.P., Titov S.V. Langevin equation method for the rotational Brownian motion and orientational relaxation in liquids. Journal of Physics A Mathematical and General 2002, 35:6789-6803.
    • (2002) Journal of Physics A Mathematical and General , vol.35 , pp. 6789-6803
    • Coffey, W.T.1    Kalmykov, Y.P.2    Titov, S.V.3
  • 9
    • 77952397349 scopus 로고    scopus 로고
    • The multiscale coarse-graining method. V Isothermal-isobaric ensemble
    • Das A., Andersen H.C. The multiscale coarse-graining method. V Isothermal-isobaric ensemble. Journal of Chemical Physics 2010, 132:164106.
    • (2010) Journal of Chemical Physics , vol.132 , pp. 164106
    • Das, A.1    Andersen, H.C.2
  • 10
    • 10244252826 scopus 로고    scopus 로고
    • Polymerization and sickle cell disease: a molecular view
    • Ferrone F.A. Polymerization and sickle cell disease: a molecular view. Microcirculation 2004, 11:115-128.
    • (2004) Microcirculation , vol.11 , pp. 115-128
    • Ferrone, F.A.1
  • 11
    • 5544242655 scopus 로고    scopus 로고
    • Dissipative particle dynamics: bridging the gap between atomistic and mesoscopic simulation
    • Groot R.D., Warren P.B. Dissipative particle dynamics: bridging the gap between atomistic and mesoscopic simulation. The Journal of Chemical Physics 1997, 107:4423-4435.
    • (1997) The Journal of Chemical Physics , vol.107 , pp. 4423-4435
    • Groot, R.D.1    Warren, P.B.2
  • 12
    • 14544291957 scopus 로고    scopus 로고
    • A multiscale coarse-graining method for biomolecular systems
    • Izvekov S., Voth G.A. A multiscale coarse-graining method for biomolecular systems. Journal of Physical Chemistry B 2005, 109:2469-2473.
    • (2005) Journal of Physical Chemistry B , vol.109 , pp. 2469-2473
    • Izvekov, S.1    Voth, G.A.2
  • 15
    • 58949096791 scopus 로고    scopus 로고
    • Computational analysis of a cross-linked actin-like network
    • Kim T., Hwang W., Kamm R.D. Computational analysis of a cross-linked actin-like network. Experimental Mechanics 2009, 49:91-104.
    • (2009) Experimental Mechanics , vol.49 , pp. 91-104
    • Kim, T.1    Hwang, W.2    Kamm, R.D.3
  • 16
    • 68249083215 scopus 로고    scopus 로고
    • Computational analysis of viscoelastic properties of crosslinked actin networks
    • Kim T., Hwang W., Lee H., Kamm R.D. Computational analysis of viscoelastic properties of crosslinked actin networks. PLoS Computational Biology 2009, 5:1-12.
    • (2009) PLoS Computational Biology , vol.5 , pp. 1-12
    • Kim, T.1    Hwang, W.2    Lee, H.3    Kamm, R.D.4
  • 20
    • 84863562506 scopus 로고
    • Double filaments in fibers and crystals of deoxygenated hemoglobin S
    • Magdoff-Fairchild B., Chiu C.C. Double filaments in fibers and crystals of deoxygenated hemoglobin S. Biophysical Journal 1980, 32:436-438.
    • (1980) Biophysical Journal , vol.32 , pp. 436-438
    • Magdoff-Fairchild, B.1    Chiu, C.C.2
  • 21
    • 33344456459 scopus 로고    scopus 로고
    • Meshless membrane model based on the moving least-squares method
    • Noguchi H., Gompper G. Meshless membrane model based on the moving least-squares method. Physical Review E 2006, 73:021903.
    • (2006) Physical Review E , vol.73 , pp. 021903
    • Noguchi, H.1    Gompper, G.2
  • 22
    • 0027592290 scopus 로고
    • Molecular dynamics of sickle and normal hemoglobins
    • Prabhakaran M., Michael E.J. Molecular dynamics of sickle and normal hemoglobins. Biopolymers 1993, 33:735-742.
    • (1993) Biopolymers , vol.33 , pp. 735-742
    • Prabhakaran, M.1    Michael, E.J.2
  • 23
    • 84863565921 scopus 로고
    • McGraw-Hill, New York, NY, F. Reif (Ed.)
    • 1965, McGraw-Hill, New York, NY. F. Reif (Ed.).
    • (1965)
  • 25
    • 0034119453 scopus 로고    scopus 로고
    • A model for the sickle hemoglobin fiber using both mutation sites
    • Roufberg A., Ferrone F.A. A model for the sickle hemoglobin fiber using both mutation sites. Protein Science 2000, 9:1031-1034.
    • (2000) Protein Science , vol.9 , pp. 1031-1034
    • Roufberg, A.1    Ferrone, F.A.2
  • 26
    • 33748266722 scopus 로고    scopus 로고
    • Mixed atomistic and coarse-grained molecular dynamics: simulation of a membrane-bound ion channel
    • Shi Q., iZvekov S., Voth G.A. Mixed atomistic and coarse-grained molecular dynamics: simulation of a membrane-bound ion channel. Journal of Physical Chemistry B 2006, 110:15045-15048.
    • (2006) Journal of Physical Chemistry B , vol.110 , pp. 15045-15048
    • Shi, Q.1    iZvekov, S.2    Voth, G.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.