메뉴 건너뛰기




Volumn 28, Issue 12, 2012, Pages

Lineage-based identification of cellular states and expression programs

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ANIMAL; ARTICLE; BIOLOGY; CELL DIFFERENTIATION; COMPARATIVE STUDY; METHODOLOGY; MOUSE; STATISTICAL MODEL; VALIDATION STUDY;

EID: 84863533720     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts204     Document Type: Article
Times cited : (2)

References (26)
  • 1
    • 0037438387 scopus 로고    scopus 로고
    • Transcriptional accessibility for genes of multiple tissues and hematopoietic lineages is hierarchically controlled during early hematopoiesis
    • Akashi, K. et al. (2003) Transcriptional accessibility for genes of multiple tissues and hematopoietic lineages is hierarchically controlled during early hematopoiesis. Blood, 101, 383-389.
    • (2003) Blood , vol.101 , pp. 383-389
    • Akashi, K.1
  • 2
    • 0034730140 scopus 로고    scopus 로고
    • Singular value decomposition for genome-wide expression data processing and modeling
    • Alter, O. et al. (2000) Singular value decomposition for genome-wide expression data processing and modeling. Proc. Na. Acad. Sci. USA, 97, 10101-10106.
    • (2000) Proc. Na. Acad. Sci. USA , vol.97 , pp. 10101-10106
    • Alter, O.1
  • 3
    • 8844277626 scopus 로고    scopus 로고
    • Analyzing time series gene expression data
    • Bar-Joseph, Z. et al. (2004) Analyzing time series gene expression data. Bioinformatics, 20, 2493-2503.
    • (2004) Bioinformatics , vol.20 , pp. 2493-2503
    • Bar-Joseph, Z.1
  • 4
    • 33645794993 scopus 로고    scopus 로고
    • Biclustering of gene expression data by non-smooth non-negative matrix factorization
    • Carmona-Saez, P. et al. (2000) Biclustering of gene expression data by non-smooth non-negative matrix factorization. BMC Bioinformatics, 7, 78.
    • (2000) BMC Bioinformatics , vol.7 , pp. 78
    • Carmona-Saez, P.1
  • 6
    • 39449112072 scopus 로고    scopus 로고
    • Gene expression trees in lymphoid development
    • Costa, I. et al. (2007) Gene expression trees in lymphoid development. BMC Immunology, 8, 25.
    • (2007) BMC Immunology , vol.8 , pp. 25
    • Costa, I.1
  • 7
    • 46249116676 scopus 로고    scopus 로고
    • Inferring differentiation pathways from gene expression
    • Ivan Costa, G. et al. (2008) Inferring differentiation pathways from gene expression. Bioinformatics, 24, i156-i164.
    • (2008) Bioinformatics , vol.24
    • Ivan Costa, G.1
  • 9
    • 35649004364 scopus 로고    scopus 로고
    • Genomic expression during human myelopoiesis
    • Ferrari, F. et al. (2007) Genomic expression during human myelopoiesis. BMC Genomics, 8, 264-264.
    • (2007) BMC Genomics , vol.8 , pp. 264-1264
    • Ferrari, F.1
  • 10
    • 34548409607 scopus 로고    scopus 로고
    • Automated discovery of functional generality of human gene expression programs
    • Georg, K. et al. (2007) Automated discovery of functional generality of human gene expression programs. PLoS Computational Biology, 3, e148.
    • (2007) PLoS Computational Biology , vol.3
    • Georg, K.1
  • 11
    • 84900510076 scopus 로고    scopus 로고
    • Non-negative matrix factorization with sparseness constraints
    • Hoyer, P.O. (2004) Non-negative matrix factorization with sparseness constraints. J. Machine Learn. Res., 5, 1457-1469.
    • (2004) J. Machine Learn. Res. , vol.5 , pp. 1457-1469
    • Hoyer, P.O.1
  • 12
    • 0142121516 scopus 로고    scopus 로고
    • Exploration, normalization, and summaries of high density oligonucleotide array probe level data
    • Irizarry, R.A. et al. (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics, 4, 249.
    • (2003) Biostatistics , vol.4 , pp. 249
    • Irizarry, R.A.1
  • 13
    • 0034303585 scopus 로고    scopus 로고
    • Neuronal specification in the spinal cord: inductive signals and transcriptional codes
    • Jessell, T.M. (2000) Neuronal specification in the spinal cord: inductive signals and transcriptional codes. Nature Reviews Genetics, 1, 20-29.
    • (2000) Nature Reviews Genetics , vol.1 , pp. 20-29
    • Jessell, T.M.1
  • 15
    • 35349020015 scopus 로고    scopus 로고
    • An illustrated review of early pancreas development in the mouse
    • Jørgensen, M.C. et al. (2007) An illustrated review of early pancreas development in the mouse. Endocrine reviews, 28, 685.
    • (2007) Endocrine reviews , vol.28 , pp. 685
    • Jørgensen, M.C.1
  • 16
    • 33747828540 scopus 로고    scopus 로고
    • Identification of regulatory modules by co-clustering latent variable models: stem cell differentiation
    • Joung, J.-G. et al. (2006) Identification of regulatory modules by co-clustering latent variable models: stem cell differentiation. Bioinformatics, 22, 2005-2011.
    • (2006) Bioinformatics , vol.22 , pp. 2005-2011
    • Joung, J.-G.1
  • 19
    • 82355191546 scopus 로고    scopus 로고
    • Embryonic stem cell-based mapping of developmental transcriptional programs
    • Mazzoni, E.O. et al. (2011) Embryonic stem cell-based mapping of developmental transcriptional programs. Nature methods.
    • (2011) Nature methods
    • Mazzoni, E.O.1
  • 20
    • 3042686005 scopus 로고    scopus 로고
    • Bayesian mixture model based clustering of replicated microarray data
    • (Oxford, England)
    • Medvedovic, M. et al. (2004) Bayesian mixture model based clustering of replicated microarray data. Bioinformatics (Oxford, England), 20, 1222-1232.
    • (2004) Bioinformatics , vol.20 , pp. 1222-1232
    • Medvedovic, M.1
  • 22
    • 76149087152 scopus 로고    scopus 로고
    • Sox17 promotes differentiation in mouse embryonic stem cells by directly regulating extraembryonic gene expression and indirectly antagonizing self-renewal
    • Niakan, K.K. et al. (2010) Sox17 promotes differentiation in mouse embryonic stem cells by directly regulating extraembryonic gene expression and indirectly antagonizing self-renewal. Genes & Development, 24, 312.
    • (2010) Genes & Development , vol.24 , pp. 312
    • Niakan, K.K.1
  • 23
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
    • Subramanian, A. et al. (2005) Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc. Nat. Acad. Sci. USA, 102, 15545.
    • (2005) Proc. Nat. Acad. Sci. USA , vol.102 , pp. 15545
    • Subramanian, A.1
  • 24
    • 79960662814 scopus 로고    scopus 로고
    • Expression cartography of human tissues using self organizing maps
    • Wirth, H. et al. (2011) Expression cartography of human tissues using self organizing maps. BMC Bioinformatics, 12, 306.
    • (2011) BMC Bioinformatics , vol.12 , pp. 306
    • Wirth, H.1
  • 25
    • 80052741737 scopus 로고    scopus 로고
    • Stage prediction of embryonic stem cell differentiation from genome-wide expression data
    • Zagar, L. et al. (2011) Stage prediction of embryonic stem cell differentiation from genome-wide expression data. Bioinformatics, 27, 2546-2553.
    • (2011) Bioinformatics , vol.27 , pp. 2546-2553
    • Zagar, L.1
  • 26
    • 79751535010 scopus 로고    scopus 로고
    • Estimating developmental states of tumors and normal tissues using a linear time-ordered model
    • Zhang, B. et al. (2011) Estimating developmental states of tumors and normal tissues using a linear time-ordered model. BMC Bioinformatics, 12, 53.
    • (2011) BMC Bioinformatics , vol.12 , pp. 53
    • Zhang, B.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.