메뉴 건너뛰기




Volumn 8, Issue , 2012, Pages

Transcriptome analysis of head kidney in grass carp and discovery of immune-related genes

Author keywords

cDNA; EST; Grass carp; Head kidney; Immune related gene

Indexed keywords

CTENOPHARYNGODON; CTENOPHARYNGODON IDELLA; CYPRINIDAE; GRASS CARP REOVIRUS; ORTHOREOVIRUS;

EID: 84863512904     PISSN: None     EISSN: 17466148     Source Type: Journal    
DOI: 10.1186/1746-6148-8-108     Document Type: Article
Times cited : (76)

References (36)
  • 2
    • 33846474760 scopus 로고    scopus 로고
    • A hitchhiker's guide to expressed sequence tag (EST) analysis
    • Nagaraj SH, Gasser RB, Ranganathan S. A hitchhiker's guide to expressed sequence tag (EST) analysis. Brief Bioinform 2007, 8:6-21.
    • (2007) Brief Bioinform , vol.8 , pp. 6-21
    • Nagaraj, S.H.1    Gasser, R.B.2    Ranganathan, S.3
  • 3
    • 0031733651 scopus 로고    scopus 로고
    • Transcriptional activities in the pituitaries of channel catfish before and after induced ovulation by injection of carp pituitary extract as revealed by expressed sequence tag analysis
    • 10.1677/jme.0.0210121, 9801455
    • Karsi A, Li P, Dunham R, Liu ZJ. Transcriptional activities in the pituitaries of channel catfish before and after induced ovulation by injection of carp pituitary extract as revealed by expressed sequence tag analysis. J Mol Endocrinol 1998, 21:121-129. 10.1677/jme.0.0210121, 9801455.
    • (1998) J Mol Endocrinol , vol.21 , pp. 121-129
    • Karsi, A.1    Li, P.2    Dunham, R.3    Liu, Z.J.4
  • 4
    • 0036140929 scopus 로고    scopus 로고
    • Analysis of expressed sequence tags (EST) obtained from common carp, Cyprinus carpio L., head kidney cells after stimulation by two mitogens, lipopolysaccharide and concanavalin-A
    • 10.1016/S1096-4959(01)00488-2, 11742760
    • Savan R, Sakai M. Analysis of expressed sequence tags (EST) obtained from common carp, Cyprinus carpio L., head kidney cells after stimulation by two mitogens, lipopolysaccharide and concanavalin-A. Comp Biochem Physiol B Biochem Mol Biol 2002, 131:71-82. 10.1016/S1096-4959(01)00488-2, 11742760.
    • (2002) Comp Biochem Physiol B Biochem Mol Biol , vol.131 , pp. 71-82
    • Savan, R.1    Sakai, M.2
  • 5
    • 0037055266 scopus 로고    scopus 로고
    • Expressed sequence tag analysis of expression profiles of zebrafish testis and ovary
    • 10.1016/S0378-1119(02)00791-6, 12234666
    • Zeng S, Gong Z. Expressed sequence tag analysis of expression profiles of zebrafish testis and ovary. Gene 2002, 294:45-53. 10.1016/S0378-1119(02)00791-6, 12234666.
    • (2002) Gene , vol.294 , pp. 45-53
    • Zeng, S.1    Gong, Z.2
  • 6
    • 0037332486 scopus 로고    scopus 로고
    • 15,000 Unique Zebrafish EST Clusters and Their Future Use in Microarray for Profiling Gene Expression Patterns During Embryogenesis
    • 10.1101/gr.885403, 430290, 12618376
    • Lo J, Lee S, Xu M, Liu F, Ruan H, Eun A, He Y, Ma W, Wang W, Wen Z, Peng J. 15,000 Unique Zebrafish EST Clusters and Their Future Use in Microarray for Profiling Gene Expression Patterns During Embryogenesis. Genome Res 2003, 13:455-466. 10.1101/gr.885403, 430290, 12618376.
    • (2003) Genome Res , vol.13 , pp. 455-466
    • Lo, J.1    Lee, S.2    Xu, M.3    Liu, F.4    Ruan, H.5    Eun, A.6    He, Y.7    Ma, W.8    Wang, W.9    Wen, Z.10    Peng, J.11
  • 8
    • 34447299402 scopus 로고    scopus 로고
    • Annotated Expressed Sequence Tags (ESTs) from pre-smolt Atlantic salmon (Salmo salar) in a searchable data resource
    • 10.1186/1471-2164-8-209, 1913521, 17605782
    • Adzhubei AA, Vlasova AV, Hagen-Larsen H, Ruden TA, Laerdahl JK, Høyheim B. Annotated Expressed Sequence Tags (ESTs) from pre-smolt Atlantic salmon (Salmo salar) in a searchable data resource. BMC Genomics 2007, 8:209. 10.1186/1471-2164-8-209, 1913521, 17605782.
    • (2007) BMC Genomics , vol.8 , pp. 209
    • Adzhubei, A.A.1    Vlasova, A.V.2    Hagen-Larsen, H.3    Ruden, T.A.4    Laerdahl, J.K.5    Høyheim, B.6
  • 9
    • 33746932130 scopus 로고    scopus 로고
    • EST-based identification of genes expressed in the liver of adult seabass (Dicentrarchus labrax, L.)
    • 10.1016/j.gene.2006.02.010, 16616996
    • Chini V, Rimoldi S, Terova G, Saroglia M, Rossi F, Bernardini G, Gornati R. EST-based identification of genes expressed in the liver of adult seabass (Dicentrarchus labrax, L.). Gene 2006, 376:102-106. 10.1016/j.gene.2006.02.010, 16616996.
    • (2006) Gene , vol.376 , pp. 102-106
    • Chini, V.1    Rimoldi, S.2    Terova, G.3    Saroglia, M.4    Rossi, F.5    Bernardini, G.6    Gornati, R.7
  • 11
    • 33748697895 scopus 로고    scopus 로고
    • Generation of a large scale repertoire of Expressed Sequence Tags (ESTs) from normalised rainbow trout cDNA libraries
    • 10.1186/1471-2164-7-196, 1564016, 16887034
    • Govoroun M, Gac FL, Guiguen Y. Generation of a large scale repertoire of Expressed Sequence Tags (ESTs) from normalised rainbow trout cDNA libraries. BMC Genomics 2006, 7:196. 10.1186/1471-2164-7-196, 1564016, 16887034.
    • (2006) BMC Genomics , vol.7 , pp. 196
    • Govoroun, M.1    Gac, F.L.2    Guiguen, Y.3
  • 12
    • 34447527051 scopus 로고    scopus 로고
    • Comprehensive EST analysis of Atlantic halibut (Hippoglossus hippoglossus), a commercially relevant aquaculture species
    • 10.1186/1471-2164-8-144, 1924502, 17547761
    • Douglas SE, Knickle LC, Kimball J, Reith ME. Comprehensive EST analysis of Atlantic halibut (Hippoglossus hippoglossus), a commercially relevant aquaculture species. BMC Genomics 2007, 8:144. 10.1186/1471-2164-8-144, 1924502, 17547761.
    • (2007) BMC Genomics , vol.8 , pp. 144
    • Douglas, S.E.1    Knickle, L.C.2    Kimball, J.3    Reith, M.E.4
  • 13
    • 40649122466 scopus 로고    scopus 로고
    • Genes expressed in blue fin tuna (Thunnus thynnus) liver and gonads
    • 10.1016/j.gene.2007.12.012, 18234455
    • Chini V, Cattaneo AG, Rossi F, Bernardini G, Terova G, Saroglia M, Gornati R. Genes expressed in blue fin tuna (Thunnus thynnus) liver and gonads. Gene 2008, 410:207-213. 10.1016/j.gene.2007.12.012, 18234455.
    • (2008) Gene , vol.410 , pp. 207-213
    • Chini, V.1    Cattaneo, A.G.2    Rossi, F.3    Bernardini, G.4    Terova, G.5    Saroglia, M.6    Gornati, R.7
  • 15
    • 15944388315 scopus 로고    scopus 로고
    • Expressed sequence tags analysis of Atlantic halibut (Hippoglossus hippoglossus) liver, kidney and spleen tissues following vaccination against Vibrio anguillarum and Aeromonas salmonicida
    • 10.1016/j.fsi.2004.10.003, 15683917
    • Park KC, Osborne JA, Tsoi SCM, Brown LL, Johnson SC. Expressed sequence tags analysis of Atlantic halibut (Hippoglossus hippoglossus) liver, kidney and spleen tissues following vaccination against Vibrio anguillarum and Aeromonas salmonicida. Fish Shellfish Immunol 2005, 18:393-415. 10.1016/j.fsi.2004.10.003, 15683917.
    • (2005) Fish Shellfish Immunol , vol.18 , pp. 393-415
    • Park, K.C.1    Osborne, J.A.2    Tsoi, S.C.M.3    Brown, L.L.4    Johnson, S.C.5
  • 17
    • 0000998941 scopus 로고    scopus 로고
    • The morphology of the immune system in teleost fishes
    • Press CML, Evensen O. The morphology of the immune system in teleost fishes. Fish S hellfish Immunol 1999, 9:309-318.
    • (1999) Fish S hellfish Immunol , vol.9 , pp. 309-318
    • Press, C.M.L.1    Evensen, O.2
  • 18
    • 0035046755 scopus 로고    scopus 로고
    • Reverse transcriptase template switching: a SMART approach for full-length cDNA library construction
    • Zhu YY, Machleder EM, Chenchik A, Li R, Siebert PD. Reverse transcriptase template switching: a SMART approach for full-length cDNA library construction. Biotechniques 2001, 30:892-897.
    • (2001) Biotechniques , vol.30 , pp. 892-897
    • Zhu, Y.Y.1    Machleder, E.M.2    Chenchik, A.3    Li, R.4    Siebert, P.D.5
  • 21
    • 84871002247 scopus 로고    scopus 로고
    • BLAST http://blast.ncbi.nlm.nih.gov/Blast.cgi.
    • BLAST
  • 25
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
    • 10.1093/bioinformatics/bti610, 16081474
    • Conesa A, Goetz S, Garcia JM, Terol J, Talon M, Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 21:3674-3676. 10.1093/bioinformatics/bti610, 16081474.
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1    Goetz, S.2    Garcia, J.M.3    Terol, J.4    Talon, M.5    Robles, M.6
  • 26
    • 34547588704 scopus 로고    scopus 로고
    • KAAS: an automatic genome annotation and pathway reconstruction server
    • 10.1093/nar/gkm321, 1933193, 17526522
    • Moriya Y, Itoh M, Okuda S, Yoshizawa A, Kanehisa M. KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res 2007, 35:W182-W185. 10.1093/nar/gkm321, 1933193, 17526522.
    • (2007) Nucleic Acids Res , vol.35
    • Moriya, Y.1    Itoh, M.2    Okuda, S.3    Yoshizawa, A.4    Kanehisa, M.5
  • 27
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • 10.1093/nar/28.1.27, 102409, 10592173
    • Kanehisa M, Goto S. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res 2000, 28:27-30. 10.1093/nar/28.1.27, 102409, 10592173.
    • (2000) Nucleic Acids Res , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 29
    • 0030681260 scopus 로고    scopus 로고
    • The significance of digital gene expression profiles
    • Audic S, Claverie JM. The significance of digital gene expression profiles. Genome Res 1997, 7:986-995.
    • (1997) Genome Res , vol.7 , pp. 986-995
    • Audic, S.1    Claverie, J.M.2
  • 30
    • 53749083993 scopus 로고    scopus 로고
    • SeqMap: mapping massive amount of oligonucleotides to the genome
    • 10.1093/bioinformatics/btn429, 2562015, 18697769
    • Jiang H, Wong WH. SeqMap: mapping massive amount of oligonucleotides to the genome. Bioinformatics 2008, 24:2395-2396. 10.1093/bioinformatics/btn429, 2562015, 18697769.
    • (2008) Bioinformatics , vol.24 , pp. 2395-2396
    • Jiang, H.1    Wong, W.H.2
  • 31
    • 84871019982 scopus 로고    scopus 로고
    • SMART http://smart.embl-heidelberg.de/.
    • SMART
  • 34
    • 4744347906 scopus 로고    scopus 로고
    • Analysis of immune-relevant genes expressed in red sea bream (Chrysophrys major) spleen
    • Chen SL, Xu MY, Hu SN, Li L. Analysis of immune-relevant genes expressed in red sea bream (Chrysophrys major) spleen. Aquaculture 2004, 240:115-130.
    • (2004) Aquaculture , vol.240 , pp. 115-130
    • Chen, S.L.1    Xu, M.Y.2    Hu, S.N.3    Li, L.4
  • 35
    • 0034875203 scopus 로고    scopus 로고
    • Transcriptome of channel catfish (Ictalurus punctatus): initial analysis of genes and expression profiles of the head kidney
    • 10.1046/j.1365-2052.2001.00753.x, 11531695
    • Cao D, Kocabas A, Ju Z, Karsi A, Li P, Patterson A, Liu Z. Transcriptome of channel catfish (Ictalurus punctatus): initial analysis of genes and expression profiles of the head kidney. Anim Genet 2001, 32:169-188. 10.1046/j.1365-2052.2001.00753.x, 11531695.
    • (2001) Anim Genet , vol.32 , pp. 169-188
    • Cao, D.1    Kocabas, A.2    Ju, Z.3    Karsi, A.4    Li, P.5    Patterson, A.6    Liu, Z.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.