메뉴 건너뛰기




Volumn 296, Issue 3-4, 2009, Pages 193-199

Analysis of expressed sequence tags from body wall, intestine and respiratory tree of sea cucumber (Apostichopus japonicus)

Author keywords

cDNA library; Expressed sequence tags; Immune related genes; Sea cucumber (Apostichopus japonicus)

Indexed keywords

AQUACULTURE; CLUSTER ANALYSIS; ECHINODERM; FUNCTIONAL MORPHOLOGY; GENE EXPRESSION; GENETIC ANALYSIS; HOMOLOGY; IMMUNE SYSTEM; MOTILITY; PROTEIN; RESPIRATION; SIGNALING;

EID: 77951629466     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2009.08.016     Document Type: Article
Times cited : (38)

References (53)
  • 1
    • 0030831258 scopus 로고    scopus 로고
    • A family of fibrinogen-related proteins that precipitates arasite-derived molecules is produced by an invertebrate after infection
    • Adema C.M., Hertel L.A., Miller R.D., and Loker E.S. A family of fibrinogen-related proteins that precipitates arasite-derived molecules is produced by an invertebrate after infection. Proc Natl Acad Sci U S A 16 (1997) 8691-8696
    • (1997) Proc Natl Acad Sci U S A , vol.16 , pp. 8691-8696
    • Adema, C.M.1    Hertel, L.A.2    Miller, R.D.3    Loker, E.S.4
  • 2
    • 0033775891 scopus 로고    scopus 로고
    • Physiological functions of thioredoxin and thioredoxin reductase
    • Arnér E.S.J., and Holmgren A. Physiological functions of thioredoxin and thioredoxin reductase. Eur. J. Biochem. 267 (2000) 6102-6109
    • (2000) Eur. J. Biochem. , vol.267 , pp. 6102-6109
    • Arnér, E.S.J.1    Holmgren, A.2
  • 4
    • 0036027763 scopus 로고    scopus 로고
    • Evolution of the acute phase response: iron release by echinoderm (Asterias forbesi) coelomocytes, and cloning of an echinoderm ferritin molecule
    • Beck G., Ellis T.W., Habicht G.S., Schluter S.F., and Marchalonis J.J. Evolution of the acute phase response: iron release by echinoderm (Asterias forbesi) coelomocytes, and cloning of an echinoderm ferritin molecule. Dev. Comp. Immunol. 26 (2002) 11-26
    • (2002) Dev. Comp. Immunol. , vol.26 , pp. 11-26
    • Beck, G.1    Ellis, T.W.2    Habicht, G.S.3    Schluter, S.F.4    Marchalonis, J.J.5
  • 5
    • 0020314173 scopus 로고
    • Receptors for complement on echinoid phagocytes. II. Purified human complement mediates echinoid phagocytosis
    • Berthuessen K. Receptors for complement on echinoid phagocytes. II. Purified human complement mediates echinoid phagocytosis. Dev. Comp. Immunol. 6 (1982) 635-642
    • (1982) Dev. Comp. Immunol. , vol.6 , pp. 635-642
    • Berthuessen, K.1
  • 6
    • 0019975865 scopus 로고
    • Receptors for complement on echinoid phagocytes. I. The opsonic effect of vertebrate sera on echinoid phagocytosis
    • Berthuessen K., and Seljelid R. Receptors for complement on echinoid phagocytes. I. The opsonic effect of vertebrate sera on echinoid phagocytosis. Dev. Comp. Immunol. 6 (1982) 423-431
    • (1982) Dev. Comp. Immunol. , vol.6 , pp. 423-431
    • Berthuessen, K.1    Seljelid, R.2
  • 8
    • 0036570143 scopus 로고    scopus 로고
    • The major yolk protein in sea urchins is a transferrin-like, iron binding protein
    • Brooks J.M., and Wessel G.M. The major yolk protein in sea urchins is a transferrin-like, iron binding protein. Dev. Biol. 245 (2002) 1-12
    • (2002) Dev. Biol. , vol.245 , pp. 1-12
    • Brooks, J.M.1    Wessel, G.M.2
  • 9
    • 0000385805 scopus 로고    scopus 로고
    • Isoforms of mammalian peroxiredoxin that reduce peroxides in presence of thioredoxin
    • Chae H.Z., Kang S.W., and Rhee S.G. Isoforms of mammalian peroxiredoxin that reduce peroxides in presence of thioredoxin. Methods Enzymol. 300 (1999) 219-226
    • (1999) Methods Enzymol. , vol.300 , pp. 219-226
    • Chae, H.Z.1    Kang, S.W.2    Rhee, S.G.3
  • 10
    • 4744347906 scopus 로고    scopus 로고
    • Analysis of immune-relevant genes expressed in red sea bream (Chrysophrys major) spleen
    • Chen S.L., Xu M.Y., Hu S.N., and Li L. Analysis of immune-relevant genes expressed in red sea bream (Chrysophrys major) spleen. Aquaculture 240 (2004) 115-130
    • (2004) Aquaculture , vol.240 , pp. 115-130
    • Chen, S.L.1    Xu, M.Y.2    Hu, S.N.3    Li, L.4
  • 11
    • 35748948074 scopus 로고    scopus 로고
    • Discovery of genes involved in defense/immunity functions in a haemocytes cDNA library from Fenneropenaeus chinensis by ESTs annotation
    • Dong B., and Xiang J.H. Discovery of genes involved in defense/immunity functions in a haemocytes cDNA library from Fenneropenaeus chinensis by ESTs annotation. Aquaculture 272 (2007) 208-215
    • (2007) Aquaculture , vol.272 , pp. 208-215
    • Dong, B.1    Xiang, J.H.2
  • 12
    • 34447527051 scopus 로고    scopus 로고
    • Comprehensive EST analysis of Atlantic halibut (Hippoglossus hippoglossus), a commercially relevant aquaculture species
    • Douglas S.E., Knickle L.C., Kimball J., and Reith M.E. Comprehensive EST analysis of Atlantic halibut (Hippoglossus hippoglossus), a commercially relevant aquaculture species. BMC Genomics 8 (2007) 144-154
    • (2007) BMC Genomics , vol.8 , pp. 144-154
    • Douglas, S.E.1    Knickle, L.C.2    Kimball, J.3    Reith, M.E.4
  • 14
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using Phred. II. Error probabilities
    • Ewing B., and Green P. Base-calling of automated sequencer traces using Phred. II. Error probabilities. Genome Res. 8 (1998) l86-l194
    • (1998) Genome Res. , vol.8
    • Ewing, B.1    Green, P.2
  • 15
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using Phred. I. Accuracy assessment
    • Ewing B., Hillier L., and Wendl M.C. Base-calling of automated sequencer traces using Phred. I. Accuracy assessment. Genome Res. 8 (1998) l75-l185
    • (1998) Genome Res. , vol.8
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3
  • 16
    • 35348935600 scopus 로고    scopus 로고
    • Gene expression profiling of coccolith-bearing cells and naked cells in haptophyte Pleurochrysis haptonemofera with a cDNA macroarray system
    • Fujiwara S., Hirokawa Y., Takatsuka Y., Suda K., Asamizu E., Takayanagi T., Shibata D., Tabata S., and Tsuzuki M. Gene expression profiling of coccolith-bearing cells and naked cells in haptophyte Pleurochrysis haptonemofera with a cDNA macroarray system. Mar. Biotechnol. 9 (2007) 550-560
    • (2007) Mar. Biotechnol. , vol.9 , pp. 550-560
    • Fujiwara, S.1    Hirokawa, Y.2    Takatsuka, Y.3    Suda, K.4    Asamizu, E.5    Takayanagi, T.6    Shibata, D.7    Tabata, S.8    Tsuzuki, M.9
  • 17
    • 0035054380 scopus 로고    scopus 로고
    • Automated finishing with autofinish
    • Gordon D., Desmarais C., and Green P. Automated finishing with autofinish. Genome Res. l1 (2001) 614-625
    • (2001) Genome Res. , vol.l1 , pp. 614-625
    • Gordon, D.1    Desmarais, C.2    Green, P.3
  • 18
    • 0034927549 scopus 로고    scopus 로고
    • Immune gene discovery by expressed sequence tag analysis of hemocytes and hepatopancreas in the Pacific White Shrimp, Litopenaeus vannamei, and the Atlantic White Shrimp, L. setiferus
    • Gross P.S., Bartlett T.C., Browdy C.L., Chapman R.W., and Warr G.W. Immune gene discovery by expressed sequence tag analysis of hemocytes and hepatopancreas in the Pacific White Shrimp, Litopenaeus vannamei, and the Atlantic White Shrimp, L. setiferus. Dev. Comp. Immunol. 25 (2001) 565-577
    • (2001) Dev. Comp. Immunol. , vol.25 , pp. 565-577
    • Gross, P.S.1    Bartlett, T.C.2    Browdy, C.L.3    Chapman, R.W.4    Warr, G.W.5
  • 20
    • 33845421656 scopus 로고    scopus 로고
    • Interaction of toposome from sea-urchin yolk granules with dimyristoyl phosphatidylserine model membranes: a 2H-NMR study
    • Hayley M.J., Emberley J., Davis P.J., Morrow M.R., and Robinson J.J. Interaction of toposome from sea-urchin yolk granules with dimyristoyl phosphatidylserine model membranes: a 2H-NMR study. Biophys. J. 91 (2006) 4555-4564
    • (2006) Biophys. J. , vol.91 , pp. 4555-4564
    • Hayley, M.J.1    Emberley, J.2    Davis, P.J.3    Morrow, M.R.4    Robinson, J.J.5
  • 21
    • 33745840843 scopus 로고    scopus 로고
    • 2+-dependent membrane-membrane interaction mediated by the sea urchin yolk granule protein, toposome
    • 2+-dependent membrane-membrane interaction mediated by the sea urchin yolk granule protein, toposome. Dev. Growth Differ. 48 (2006) 401-409
    • (2006) Dev. Growth Differ. , vol.48 , pp. 401-409
    • Hayley, M.1    Perera, A.2    Robinson, J.J.3
  • 22
    • 0344719474 scopus 로고    scopus 로고
    • Putative SNP discovery in interspecific hybrids of catfish by comparative EST analysis
    • He C., Chen L., Simmons M., Li P., Kim S., and Liu Z.J. Putative SNP discovery in interspecific hybrids of catfish by comparative EST analysis. Anim. Genet. 34 (2003) 445-448
    • (2003) Anim. Genet. , vol.34 , pp. 445-448
    • He, C.1    Chen, L.2    Simmons, M.3    Li, P.4    Kim, S.5    Liu, Z.J.6
  • 24
    • 0033038467 scopus 로고    scopus 로고
    • An atypical iron responsive element (IRE) within crayfish ferritin mRNA and an iron regulatory protein 1 (IRP1)-like protein from crayfish hepatopancreas
    • Huang T.S., Melefors O., Lind M., and Soderhall K. An atypical iron responsive element (IRE) within crayfish ferritin mRNA and an iron regulatory protein 1 (IRP1)-like protein from crayfish hepatopancreas. Insect Biochem. Mol. Biol. 29 (1999) 1-9
    • (1999) Insect Biochem. Mol. Biol. , vol.29 , pp. 1-9
    • Huang, T.S.1    Melefors, O.2    Lind, M.3    Soderhall, K.4
  • 25
    • 17644366913 scopus 로고    scopus 로고
    • NOD-LRR proteins: role in host-microbial interactions and inflammatory disease
    • Inohara C., McDonald C., and Nunez G. NOD-LRR proteins: role in host-microbial interactions and inflammatory disease. Annu. Rev. Biochem. 74 (2005) 355-383
    • (2005) Annu. Rev. Biochem. , vol.74 , pp. 355-383
    • Inohara, C.1    McDonald, C.2    Nunez, G.3
  • 26
    • 0036570143 scopus 로고    scopus 로고
    • The major yolk protein in sea urchins is a transferrin-like, iron binding protein
    • Jacqueline M.B., and Gary M.W. The major yolk protein in sea urchins is a transferrin-like, iron binding protein. Dev. Biol. 245 (2002) 1-12
    • (2002) Dev. Biol. , vol.245 , pp. 1-12
    • Jacqueline, M.B.1    Gary, M.W.2
  • 27
    • 34247524096 scopus 로고    scopus 로고
    • Human TRP14 gene homolog from amphioxus Branchiostoma belcheri: identification, evolution, expression and functional characterization
    • Jiang S.J., Zhang S.C., Vuthiphandchai V., and Nimrat S. Human TRP14 gene homolog from amphioxus Branchiostoma belcheri: identification, evolution, expression and functional characterization. J. Anat. 210 (2007) 555-564
    • (2007) J. Anat. , vol.210 , pp. 555-564
    • Jiang, S.J.1    Zhang, S.C.2    Vuthiphandchai, V.3    Nimrat, S.4
  • 28
    • 0028963594 scopus 로고
    • Iron: Mammalian defense systems, mechanisms of disease, and chelation therapy approaches
    • Kontoghiorghes G.J., and Weinberg E.D. Iron: Mammalian defense systems, mechanisms of disease, and chelation therapy approaches. Blood Rev. 9 (1995) 33-45
    • (1995) Blood Rev. , vol.9 , pp. 33-45
    • Kontoghiorghes, G.J.1    Weinberg, E.D.2
  • 29
    • 23044452084 scopus 로고    scopus 로고
    • NACHT-LRR proteins (NLRs) in bacterial infection and immunity
    • Kufer T.A., Fritz J.H., and Philpott D.J. NACHT-LRR proteins (NLRs) in bacterial infection and immunity. Trends Microbiol. 13 (2005) 381-388
    • (2005) Trends Microbiol. , vol.13 , pp. 381-388
    • Kufer, T.A.1    Fritz, J.H.2    Philpott, D.J.3
  • 30
    • 14744280589 scopus 로고    scopus 로고
    • Expression profiling of immune-related genes from Japanese flounder Paralichthys olivaceus kidney cells using cDNA microarrays
    • Kurobe T., Yasuike M., Kimura T., Hirono I., and Aoki T. Expression profiling of immune-related genes from Japanese flounder Paralichthys olivaceus kidney cells using cDNA microarrays. Dev. Comp. Immunol. 29 (2005) 515-523
    • (2005) Dev. Comp. Immunol. , vol.29 , pp. 515-523
    • Kurobe, T.1    Yasuike, M.2    Kimura, T.3    Hirono, I.4    Aoki, T.5
  • 31
    • 33750516305 scopus 로고    scopus 로고
    • Analysis of expressed sequence tags from the harmful alga, Prymnesium parvum (Prymnesiophyceae, Haptophyta)
    • La Claire J.W. Analysis of expressed sequence tags from the harmful alga, Prymnesium parvum (Prymnesiophyceae, Haptophyta). Mar. Biotechnol. 8 (2006) 534-546
    • (2006) Mar. Biotechnol. , vol.8 , pp. 534-546
    • La Claire, J.W.1
  • 33
    • 0028108632 scopus 로고
    • Chromosomal assignments of 3′-directed partial cDNA sequences representing novel genes expressed in granulocytoid cells
    • Murakawa K., Matsubara K., Fukushima A., Yoshii J., and Okubo K. Chromosomal assignments of 3′-directed partial cDNA sequences representing novel genes expressed in granulocytoid cells. Genomics 23 (1994) 379-389
    • (1994) Genomics , vol.23 , pp. 379-389
    • Murakawa, K.1    Matsubara, K.2    Fukushima, A.3    Yoshii, J.4    Okubo, K.5
  • 35
    • 27644444230 scopus 로고    scopus 로고
    • The response of ferritin to LPS and acute phase of Pseudomonas infection
    • Ong D.S., Wang L., Zhu Y., Ho B., and Ding J.L. The response of ferritin to LPS and acute phase of Pseudomonas infection. J. Endotoxin Res. 5 (2005) 267-280
    • (2005) J. Endotoxin Res. , vol.5 , pp. 267-280
    • Ong, D.S.1    Wang, L.2    Zhu, Y.3    Ho, B.4    Ding, J.L.5
  • 37
    • 0033976674 scopus 로고    scopus 로고
    • New approaches towards an understanding of deuterostome immunity
    • Rast J.P., Pancer Z., and Davidson E.H. New approaches towards an understanding of deuterostome immunity. Curr. Top. Microbiol. Immunol. 248 (2000) 3-16
    • (2000) Curr. Top. Microbiol. Immunol. , vol.248 , pp. 3-16
    • Rast, J.P.1    Pancer, Z.2    Davidson, E.H.3
  • 41
    • 42149158792 scopus 로고    scopus 로고
    • Linking the genomes of nonmodel teleosts through comparative genomics
    • Sarropoulou E., Nousdili D., Magoulas A., and Kotoulas G. Linking the genomes of nonmodel teleosts through comparative genomics. Mar. Biotechnol. 10 (2008) 227-233
    • (2008) Mar. Biotechnol. , vol.10 , pp. 227-233
    • Sarropoulou, E.1    Nousdili, D.2    Magoulas, A.3    Kotoulas, G.4
  • 42
    • 0032056292 scopus 로고    scopus 로고
    • The oligomeric integrity of toposome is essential for its morphogenetic function
    • Scaturro G., Zito F., and Matranga V. The oligomeric integrity of toposome is essential for its morphogenetic function. Cell Biol. Int. 22 (1998) 321-326
    • (1998) Cell Biol. Int. , vol.22 , pp. 321-326
    • Scaturro, G.1    Zito, F.2    Matranga, V.3
  • 43
    • 0028344541 scopus 로고
    • Distinct effects of thioredoxin and antioxidants on the activation of transcription factors NF-kappa B and AP-1
    • Schenk H., Klein M., Erdbrugger W., Droge W., and Schulze-Osthoff K. Distinct effects of thioredoxin and antioxidants on the activation of transcription factors NF-kappa B and AP-1. Proc. Natl. Acad. Sci. U. S. A. 91 (1994) 1672-1676
    • (1994) Proc. Natl. Acad. Sci. U. S. A. , vol.91 , pp. 1672-1676
    • Schenk, H.1    Klein, M.2    Erdbrugger, W.3    Droge, W.4    Schulze-Osthoff, K.5
  • 44
    • 0030028797 scopus 로고    scopus 로고
    • Sea urchin genes expressed in activated coelomocytes are identified by expressed sequence tags. Complement homologues and other putative immune response genes suggest immune system homology within the deuterostomes
    • Smith L.C., Chang L., Britten R.J., and Davidson E.H. Sea urchin genes expressed in activated coelomocytes are identified by expressed sequence tags. Complement homologues and other putative immune response genes suggest immune system homology within the deuterostomes. J. Immunol. 156 (1996) 593-602
    • (1996) J. Immunol. , vol.156 , pp. 593-602
    • Smith, L.C.1    Chang, L.2    Britten, R.J.3    Davidson, E.H.4
  • 45
    • 33646476745 scopus 로고    scopus 로고
    • Development of expressed sequence tags from the bay scallop, Argopecten irradians
    • Song L.S., Xu W., Li C.H., Li H.L., Wu L.T., Xiang J.H., and Guo X.M. Development of expressed sequence tags from the bay scallop, Argopecten irradians. Mar. Biotechnol. 8 (2006) 161-169
    • (2006) Mar. Biotechnol. , vol.8 , pp. 161-169
    • Song, L.S.1    Xu, W.2    Li, C.H.3    Li, H.L.4    Wu, L.T.5    Xiang, J.H.6    Guo, X.M.7
  • 46
    • 0034507642 scopus 로고    scopus 로고
    • Expression and characterization of nonmammalian selenoprotein P in the zebrafish, Danio rerio
    • Tujebajeva R.M., Ransom D.G., Harney J.W., and Berry M.J. Expression and characterization of nonmammalian selenoprotein P in the zebrafish, Danio rerio. Genes Cells 5 (2000) 897-903
    • (2000) Genes Cells , vol.5 , pp. 897-903
    • Tujebajeva, R.M.1    Ransom, D.G.2    Harney, J.W.3    Berry, M.J.4
  • 48
    • 34848917832 scopus 로고    scopus 로고
    • Development and characterization of EST-SSR markers in the eastern oyster Crassostrea virginica
    • Wang Y., and Guo X. Development and characterization of EST-SSR markers in the eastern oyster Crassostrea virginica. Mar. Biotechnol. 9 (2007) 500-511
    • (2007) Mar. Biotechnol. , vol.9 , pp. 500-511
    • Wang, Y.1    Guo, X.2
  • 49
    • 0025230414 scopus 로고
    • Presence of a vertebrate fibrinogen-like sequence in an echinoderm
    • Xu X., and Doolittle R.F. Presence of a vertebrate fibrinogen-like sequence in an echinoderm. Proc. Natl. Acad. Sci. 87 (1990) 2097-2101
    • (1990) Proc. Natl. Acad. Sci. , vol.87 , pp. 2097-2101
    • Xu, X.1    Doolittle, R.F.2
  • 51
    • 0035217804 scopus 로고    scopus 로고
    • Parasite responsive IgSF members in the snail Biomphalaria glabrata: characterization of novel genes with tandemly arranged IgSF domains and a fibrinogen domain
    • Zhang S.M., Leonard P.M., Adema C.M., and Loker E.S. Parasite responsive IgSF members in the snail Biomphalaria glabrata: characterization of novel genes with tandemly arranged IgSF domains and a fibrinogen domain. Immunogenetics 53 (2001) 684-694
    • (2001) Immunogenetics , vol.53 , pp. 684-694
    • Zhang, S.M.1    Leonard, P.M.2    Adema, C.M.3    Loker, E.S.4
  • 52
    • 35349006401 scopus 로고    scopus 로고
    • Fosmid library construction and initial analysis of end sequences in Zhikong scallop (Chlamys farreri)
    • Zhang L., Bao Z., Cheng J., Li H., Huang X., Wang S., Zhang C., and Hu J. Fosmid library construction and initial analysis of end sequences in Zhikong scallop (Chlamys farreri). Mar. Biotechnol. 9 (2007) 606-612
    • (2007) Mar. Biotechnol. , vol.9 , pp. 606-612
    • Zhang, L.1    Bao, Z.2    Cheng, J.3    Li, H.4    Huang, X.5    Wang, S.6    Zhang, C.7    Hu, J.8
  • 53
    • 33748912159 scopus 로고    scopus 로고
    • Comparative analysis of genes expressed in regenerating intestine and non-eviscerated intestine of Apostichopus japonicus Selenka (Aspidochirotida: Stichopodidae) and cloning of ependymin gene
    • Zheng F.X., Sun X.Q., Fang B.H., Hong X.G., and Zhang J.X. Comparative analysis of genes expressed in regenerating intestine and non-eviscerated intestine of Apostichopus japonicus Selenka (Aspidochirotida: Stichopodidae) and cloning of ependymin gene. Aquaculture 571 (2006) 109-122
    • (2006) Aquaculture , vol.571 , pp. 109-122
    • Zheng, F.X.1    Sun, X.Q.2    Fang, B.H.3    Hong, X.G.4    Zhang, J.X.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.