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Volumn 10, Issue 6, 2012, Pages 1192-1202

Diversity of nonribosomal peptide synthetase genes in the microbial metagenomes of marine sponges

Author keywords

Marine sponge; Metagenomics; Nonribosomal peptide synthetase; NRPS; Porifera

Indexed keywords

NONRIBOSOMAL PEPTIDE SYNTHETASE;

EID: 84863482770     PISSN: None     EISSN: 16603397     Source Type: Journal    
DOI: 10.3390/md10061192     Document Type: Article
Times cited : (17)

References (34)
  • 2
    • 34250733462 scopus 로고    scopus 로고
    • Sponge-associated microorganisms: Evolution, ecology, and biotechnological potential
    • DOI 10.1128/MMBR.00040-06
    • Taylor, M.W.; Radax, R.; Steger, D.; Wagner, M. Sponge-associated microorganisms: Evolution, ecology, and biotechnological potential. Microbiol. Mol. Biol. Rev. 2007, 71, 295-347. (Pubitemid 46954308)
    • (2007) Microbiology and Molecular Biology Reviews , vol.71 , Issue.2 , pp. 295-347
    • Taylor, M.W.1    Radax, R.2    Steger, D.3    Wagner, M.4
  • 3
    • 61449113023 scopus 로고    scopus 로고
    • Metabolites from symbiotic bacteria
    • Piel, J. Metabolites from symbiotic bacteria. Nat. Prod. Rep. 2009, 26, 338-362.
    • (2009) Nat. Prod. Rep. , vol.26 , pp. 338-362
    • Piel, J.1
  • 4
    • 80053243567 scopus 로고    scopus 로고
    • Approaches to capturing and designing biologically active small molecules produced by uncultured microbes
    • Piel, J. Approaches to capturing and designing biologically active small molecules produced by uncultured microbes. Ann. Rev. Microbiol. 2011, 65, 431-453.
    • (2011) Ann. Rev. Microbiol. , vol.65 , pp. 431-453
    • Piel, J.1
  • 5
    • 0036905773 scopus 로고    scopus 로고
    • Ways of assembling complex natural products on modular nonribosomal peptide synthetases
    • Mootz, H.D.; Schwarzer, D.; Marahiel, M.A. Ways of assembling complex natural products on modular nonribosomal peptide synthetases. ChemBioChem 2001, 3, 490-504.
    • (2001) ChemBioChem , vol.3 , pp. 490-504
    • Mootz, H.D.1    Schwarzer, D.2    Marahiel, M.A.3
  • 6
    • 0037524493 scopus 로고    scopus 로고
    • Nonribosomal peptides: From genes to products
    • DOI 10.1039/b111145k
    • Schwarzer, D.; Finking, R.; Marahiel M.A. Nonribosomal peptides: From genes to products. Nat. Prod. Rep. 2003, 20, 275-287. (Pubitemid 36770356)
    • (2003) Natural Product Reports , vol.20 , Issue.3 , pp. 275-287
    • Schwarzer, D.1    Finking, R.2    Marahiel, M.A.3
  • 7
    • 0032475992 scopus 로고    scopus 로고
    • Harnessing the biosynthetic code: Combinations, permutations, and mutations
    • DOI 10.1126/science.282.5386.63
    • Cane, D.E.; Walsh, C.T.; Khosla, C. Harnessing the biosynthetic code: Combinations, permutations, and mutations. Science 1998, 282, 63-68. (Pubitemid 28471127)
    • (1998) Science , vol.282 , Issue.5386 , pp. 63-68
    • Cane, D.E.1    Walsh, C.T.2    Khosla, C.3
  • 8
    • 80053337515 scopus 로고    scopus 로고
    • Production of bioactive secondary metabolites by marine vibrionaceae
    • Mansson, M.; Gram, L.; Larsen, T.O. Production of bioactive secondary metabolites by marine vibrionaceae. Mar. Drugs 2011, 9, 1440-1468.
    • (2011) Mar. Drugs , vol.9 , pp. 1440-1468
    • Mansson, M.1    Gram, L.2    Larsen, T.O.3
  • 9
    • 0036280341 scopus 로고    scopus 로고
    • Genetics and assembly line enzymology of siderophore biosynthesis in bacteria
    • DOI 10.1128/MMBR.66.2.223-249.2002
    • Crosa, J.H.; Walsh, C.T. Genetics and assembly line enzymology of siderophore biosynthesis in bacteria. Microbiol. Mol. Biol. Rev. 2002, 66, 223-249. (Pubitemid 34625709)
    • (2002) Microbiology and Molecular Biology Reviews , vol.66 , Issue.2 , pp. 223-249
    • Crosa, J.H.1    Walsh, C.T.2
  • 10
    • 0033485280 scopus 로고    scopus 로고
    • The parallel and convergent universes of polyketide synthases and nonribosomal peptide synthetases
    • Cane, D.E.; Walsh, C.T. The parallel and convergent universes of polyketide synthases and nonribosomal peptide synthetases. Chem. Biol. 1999, 6, 319-325.
    • (1999) Chem. Biol. , vol.6 , pp. 319-325
    • Cane, D.E.1    Walsh, C.T.2
  • 11
    • 77954290013 scopus 로고    scopus 로고
    • Biosynthetic potential of phylogenetically unique endophytic actinomycetes from tropical plants
    • Janso, J.E.; Carter, G.T. Biosynthetic potential of phylogenetically unique endophytic actinomycetes from tropical plants. Appl. Environ. Microbiol. 2010, 76, 4377-4386.
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 4377-4386
    • Janso, J.E.1    Carter, G.T.2
  • 12
    • 34948881163 scopus 로고    scopus 로고
    • Distribution of NRPS gene families within the Neotyphodium/Epichloe complex
    • DOI 10.1016/j.fgb.2007.04.009, PII S1087184507000916
    • Johnson, R.; Voisey, C.; Johnson, L.; Pratt, J.; Fleetwood, D.; Khan, A.; Bryan, G. Distribution of NRPS gene families within the Neotyphodium/Epichloe complex. Fungal Genet. Biol. 2007, 44, 1180-1190. (Pubitemid 47532772)
    • (2007) Fungal Genetics and Biology , vol.44 , Issue.11 , pp. 1180-1190
    • Johnson, R.1    Voisey, C.2    Johnson, L.3    Pratt, J.4    Fleetwood, D.5    Khan, A.6    Bryan, G.7
  • 13
    • 77953075776 scopus 로고    scopus 로고
    • Comprehensive investigation of marine Actinobacteria associated with the sponge Halichondria panicea
    • Schneemann, I.; Nagel; K.; Kajahn, I.; Labes, A.; Wiese, J.; Imhoff, J.F. Comprehensive investigation of marine Actinobacteria associated with the sponge Halichondria panicea. Appl. Environ. Microbiol. 2010, 76, 3702-3714.
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 3702-3714
    • Schneemann, I.1    Nagel, K.2    Kajahn, I.3    Labes, A.4    Wiese, J.5    Imhoff, J.F.6
  • 15
    • 63449139007 scopus 로고    scopus 로고
    • The screening of antimicrobial bacteria with diverse novel nonribosomal peptide synthetase (NRPS) genes from South China Sea sponges
    • Zhang, W.; Li, Z.; Miao, X.; Zhang, F. The screening of antimicrobial bacteria with diverse novel nonribosomal peptide synthetase (NRPS) genes from South China Sea sponges. Mar. Biotechnol. 2009, 11, 346-355.
    • (2009) Mar. Biotechnol. , vol.11 , pp. 346-355
    • Zhang, W.1    Li, Z.2    Miao, X.3    Zhang, F.4
  • 16
    • 80052879324 scopus 로고    scopus 로고
    • Phylogenetically diverse cultivable fungal community and polyketide synthase (PKS), non-ribosomal peptide synthase (NRPS) genes associated with the South China Sea sponges
    • Zhou, K.; Zhang, X.; Zhang, F.; Li, Z. Phylogenetically diverse cultivable fungal community and polyketide synthase (PKS), non-ribosomal peptide synthase (NRPS) genes associated with the South China Sea sponges. Microb. Ecol. 2011, 62, 644-654.
    • (2011) Microb. Ecol. , vol.62 , pp. 644-654
    • Zhou, K.1    Zhang, X.2    Zhang, F.3    Li, Z.4
  • 17
    • 32044458813 scopus 로고    scopus 로고
    • Distribution and diversity of natural product genes in marine and freshwater cyanobacterial cultures and genomes
    • DOI 10.1128/AEM.71.11.7401-7413.2005
    • Ehrenreich, I.M.; Waterbury, J.B.; Webb, E.A. Distribution and diversity of natural product genes in marine and freshwater cyanobacterial cultures and genomes. Appl. Environ. Microbiol. 2005, 71, 7401-7413. (Pubitemid 43194234)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.11 , pp. 7401-7413
    • Ehrenreich, I.M.1    Waterbury, J.B.2    Webb, E.A.3
  • 18
    • 77950553761 scopus 로고    scopus 로고
    • Sequence-based analysis of secondary-metabolite biosynthesis in marine actinobacteria
    • Gontang, E.A.; Gaudêncio, S.P.; Fenical, W.; Jensen, P.R. Sequence-based analysis of secondary-metabolite biosynthesis in marine actinobacteria. Appl. Environ. Microbiol. 2010, 76, 2487-2499.
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 2487-2499
    • Gontang, E.A.1    Gaudêncio, S.P.2    Fenical, W.3    Jensen, P.R.4
  • 19
    • 84859424184 scopus 로고    scopus 로고
    • Unique actinomycetes from marine caves and coral reef sediments provide novel PKS and NRPS biosynthetic gene clusters
    • Hodges, T.W.; Slattery, M.; Olson, J.B. Unique actinomycetes from marine caves and coral reef sediments provide novel PKS and NRPS biosynthetic gene clusters. Mar. Biotechnol. 2012, 14, 270-280.
    • (2012) Mar. Biotechnol. , vol.14 , pp. 270-280
    • Hodges, T.W.1    Slattery, M.2    Olson, J.B.3
  • 20
    • 23744472955 scopus 로고    scopus 로고
    • Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta
    • DOI 10.1128/AEM.71.8.4840-4849.2005
    • Schirmer, A.; Gadkari, R.; Reeves, C.D.; Ibrahim, F.; DeLong, E.F.; Hutchinson, C.R. Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta. Appl. Environ. Microbiol. 2005, 71, 4840-4849. (Pubitemid 41129543)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.8 , pp. 4840-4849
    • Schirmer, A.1    Gadkari, R.2    Reeves, C.D.3    Ibrahim, F.4    DeLong, E.F.5    Hutchinson, C.R.6
  • 21
    • 78649723307 scopus 로고    scopus 로고
    • PKS and NRPS gene clusters from microbial symbiont cells of marine sponges by whole genome amplification
    • Siegl, A.M.; Hentschel, U. PKS and NRPS gene clusters from microbial symbiont cells of marine sponges by whole genome amplification. Environ. Microbiol. Rep. 2010, 2, 507-513.
    • (2010) Environ. Microbiol. Rep. , vol.2 , pp. 507-513
    • Siegl, A.M.1    Hentschel, U.2
  • 23
    • 78650019762 scopus 로고    scopus 로고
    • Linking chemical and microbial diversity in marine sponges: Possible role for Poribacteria as producers of methyl-branched fatty acids
    • Hochmuth, T.; Niederkrüger, H.; Gernert, C.; Siegl, A.; Taudien, S.; Platzer, M.; Crews, P.; Hentschel, U.; Piel, J. Linking chemical and microbial diversity in marine sponges: Possible role for Poribacteria as producers of methyl-branched fatty acids. ChemBioChem. 2010, 11, 2572-2578.
    • (2010) ChemBioChem. , vol.11 , pp. 2572-2578
    • Hochmuth, T.1    Niederkrüger, H.2    Gernert, C.3    Siegl, A.4    Taudien, S.5    Platzer, M.6    Crews, P.7    Hentschel, U.8    Piel, J.9
  • 24
    • 84871649308 scopus 로고    scopus 로고
    • Genomic mining for novel FADH2-dependent halogenases in marine sponge-associated microbial consortia
    • doi:10.1007/s10126-012-9455-2
    • Bayer, K.; Scheuermayer, M.; Fieseler, L.; Hentschel, U. Genomic mining for novel FADH2-dependent halogenases in marine sponge-associated microbial consortia. Mar. Biotechnol. 2012, doi:10.1007/s10126-012-9455-2.
    • (2012) Mar. Biotechnol.
    • Bayer, K.1    Scheuermayer, M.2    Fieseler, L.3    Hentschel, U.4
  • 25
    • 19944362206 scopus 로고    scopus 로고
    • New PCR primers for the screening of NRPS and PKS-I systems in actinomycetes: Detection and distribution of these biosynthetic gene sequences in major taxonomic groups
    • DOI 10.1007/s00248-004-0249-6
    • Ayuso-Sacido, A.; Genilloud, O. New PCR primers for the screening of NRPS and PKS-I systems in actinomycetes: Detection and distribution of these biosynthetic gene sequences in major taxonomic groups. Microb. Ecol. 2005, 49, 10-24. (Pubitemid 40747800)
    • (2005) Microbial Ecology , vol.49 , Issue.1 , pp. 10-24
    • Ayuso-Sacido, A.1    Genilloud, O.2
  • 26
    • 3442896886 scopus 로고    scopus 로고
    • NRPS-PKS: A knowledge-based resource for analysis of NRPS/PKS megasynthases
    • Ansari, M.Z.; Yadav, G.; Gokhale, R.S.; Mohanty, D. NRPS-PKS: A knowledge-based resource for analysis of NRPS/PKS megasynthases. Nucleic Acids Res. 2004, 1, 405-413.
    • (2004) Nucleic Acids Res. , vol.1 , pp. 405-413
    • Ansari, M.Z.1    Yadav, G.2    Gokhale, R.S.3    Mohanty, D.4
  • 27
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • Tamura, K.; Dudley, J.; Nei, M.; Kumar, S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24, 1596-1599. (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 29
    • 84855270968 scopus 로고    scopus 로고
    • Iron transporters in marine prokaryotic genomes and metagenomes
    • Hopkinson, B.M.; Barbeau, K.A. Iron transporters in marine prokaryotic genomes and metagenomes. Environ. Microbiol. 2012, 14, 114-128.
    • (2012) Environ. Microbiol. , vol.14 , pp. 114-128
    • Hopkinson, B.M.1    Barbeau, K.A.2
  • 30
    • 0036795821 scopus 로고    scopus 로고
    • Widespread and persistent populations of a major new marine actinomycete taxon in ocean sediments
    • DOI 10.1128/AEM.68.10.5005-5011.2002
    • Mincer, T.J.; Jensen, P.R.; Kauffman, C.A.; Fenical, W. Widespread and persistent populations of a major new marine actinomycete taxon in ocean sediments. Appl. Environ. Microbiol. 2002, 68, 5005-5011. (Pubitemid 35154811)
    • (2002) Applied and Environmental Microbiology , vol.68 , Issue.10 , pp. 5005-5011
    • Mincer, T.J.1    Jensen, P.R.2    Kauffman, C.A.3    Fenical, W.4
  • 31
    • 0035062712 scopus 로고    scopus 로고
    • Isolation and phylogenetic analysis of bacteria with antimicrobial activities from the Mediterranean sponges Aplysina aerophoba and Aplysina cavernicola
    • DOI 10.1016/S0168-6496(01)00110-6, PII S0168649601001106
    • Hentschel, U.; Schmid, M.; Wagner, M.; Fieseler, L.; Gernert, C.; Hacker, J. Isolation and phylogenetic analysis of bacteria with antimicrobial activities from the Mediterranean sponges Aplysina aerophoba and Aplysina cavernicola. FEMS Microbiol. Ecol. 2001, 35, 305-312. (Pubitemid 32320007)
    • (2001) FEMS Microbiology Ecology , vol.35 , Issue.3 , pp. 305-312
    • Hentschel, U.1    Schmid, M.2    Wagner, M.3    Fieseler, L.4    Gernert, C.5    Hacker, J.6
  • 32
    • 0036753178 scopus 로고    scopus 로고
    • A gene cluster from a marine Streptomyces encoding the biosynthesis of the aromatic spiroketal polyketide griseorhodin A
    • DOI 10.1016/S1074-5521(02)00223-5, PII S1074552102002235
    • Li, A.; Piel, J. A gene cluster from a marine Streptomyces encoding the biosynthesis of the aromatic spiroketal polyketide griseorhodin A. Chem. Biol. 2002, 9, 1017-1026. (Pubitemid 35273722)
    • (2002) Chemistry and Biology , vol.9 , Issue.9 , pp. 1017-1026
    • Li, A.1    Piel, J.2


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