-
1
-
-
26444483354
-
Transcriptional program of early sporulation and stationary-phase events in clostridium acetobutylicum
-
Alsaker KV, Papoutsakis ET (2005) Transcriptional program of early sporulation and stationary-phase events in Clostridium acetobutylicum. J Bacteriol 187:7103
-
(2005)
J Bacteriol
, vol.187
, pp. 7103
-
-
Alsaker, K.V.1
Papoutsakis, E.T.2
-
2
-
-
9144232912
-
Uniprot: The universal protein knowledgebase
-
Apweiler R, Bairoch A, Wu C, Barker W, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M (2004) UniProt: the universal protein knowledgebase. Nucleic Acids Res 32:D115
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Apweiler, R.1
Bairoch, A.2
Wu, C.3
Barker, W.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.8
Lopez, R.9
Magrane, M.10
-
3
-
-
48249119082
-
Patternlab for proteomics: A tool for differential shotgun proteomics
-
Carvalho P, Fischer J, Chen E, Yates J, Barbosa V (2008) PatternLab for proteomics: a tool for differential shotgun proteomics. BMC Bioinformatics 9:316
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 316
-
-
Carvalho, P.1
Fischer, J.2
Chen, E.3
Yates, J.4
Barbosa, V.5
-
4
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng J, McCormack A, Yates J (1994) An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J Am Soc Mass Spectrom 5:976-989
-
(1994)
J Am Soc Mass Spectrom
, vol.5
, pp. 976-989
-
-
Eng, J.1
McCormack, A.2
Yates, J.3
-
5
-
-
33750699996
-
Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors
-
DOI 10.1016/j.ymeth.2006.07.028, PII S1046202306002076
-
Florens L, Carozza MJ, Swanson SK, Fournier M, Coleman MK, Workman JL, Washburn MP (2006) Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors. Methods 40:303-311 (Pubitemid 44709624)
-
(2006)
Methods
, vol.40
, Issue.4
, pp. 303-311
-
-
Florens, L.1
Carozza, M.J.2
Swanson, S.K.3
Fournier, M.4
Coleman, M.K.5
Workman, J.L.6
Washburn, M.P.7
-
7
-
-
78149464840
-
Transcriptional analysis of catabolite repression in clostridium acetobutylicum growing on mixtures of d-glucose and d-xylose
-
Grimmler C, Held C, Liebl W, Ehrenreich A (2010) Transcriptional analysis of catabolite repression in Clostridium acetobutylicum growing on mixtures of D-glucose and D-xylose. J Biotechnol 150:315-323
-
(2010)
J Biotechnol
, vol.150
, pp. 315-323
-
-
Grimmler, C.1
Held, C.2
Liebl, W.3
Ehrenreich, A.4
-
8
-
-
78650924319
-
Genome-wide gene expression analysis of the switch between acidogenesis and solventogenesis in continuous cultures of clostridium acetobutylicum
-
Grimmler C, Janssen H, Kraube D, Fischer RJ, Bahl H, Dürre P, Liebl W, Ehrenreich A (2011) Genome-wide gene expression analysis of the switch between acidogenesis and solventogenesis in continuous cultures of Clostridium acetobutylicum. J Mol Microbiol Biotechnol 20:1-15
-
(2011)
J Mol Microbiol Biotechnol
, vol.20
, pp. 1-15
-
-
Grimmler, C.1
Janssen, H.2
Kraube, D.3
Fischer, R.J.4
Bahl, H.5
Dürre, P.6
Liebl, W.7
Ehrenreich, A.8
-
9
-
-
70249106057
-
Improvement of xylose utilization in clostridium acetobutylicum via expression of the tala gene encoding transaldolase from escherichia coli
-
Gu Y, Li J, Zhang L, Chen J, Niu L, Yang Y, Yang S, Jiang W (2009) Improvement of xylose utilization in Clostridium acetobutylicum via expression of the talA gene encoding transaldolase from Escherichia coli. J Biotechnol 143:284-287
-
(2009)
J Biotechnol
, vol.143
, pp. 284-287
-
-
Gu, Y.1
Li, J.2
Zhang, L.3
Chen, J.4
Niu, L.5
Yang, Y.6
Yang, S.7
Jiang, W.8
-
10
-
-
0021261020
-
Intermediary metabolism in clostridium acetobutylicum: Levels of enzymes involved in the formation of acetate and butyrate
-
Hartmanis MGN, Gatenbeck S (1984) Intermediary metabolism in Clostridium acetobutylicum: levels of enzymes involved in the formation of acetate and butyrate. Appl Environ Microbiol 47:1277
-
(1984)
Appl Environ Microbiol
, vol.47
, pp. 1277
-
-
Hartmanis, M.G.N.1
Gatenbeck, S.2
-
11
-
-
0000857282
-
Methods for the growth and enumeration of anaerobic spore-formers from cheese, with observations on the effect of nisin
-
Hibsch A, Grinsted E (1954) Methods for the growth and enumeration of anaerobic spore-formers from cheese, with observations on the effect of nisin. J Dairy Res 21:101-110
-
(1954)
J Dairy Res
, vol.21
, pp. 101-110
-
-
Hibsch, A.1
Grinsted, E.2
-
12
-
-
0343022865
-
Enzymes limiting butanol and acetone formation in continuous and batch cultures of clostridium acetobutylicum
-
Hüsemann MHW, Papoutsakis ET (1989) Enzymes limiting butanol and acetone formation in continuous and batch cultures of Clostridium acetobutylicum. Appl Microb Biotechnol 31:435-444
-
(1989)
Appl Microb Biotechnol
, vol.31
, pp. 435-444
-
-
Hüsemann, M.H.W.1
Papoutsakis, E.T.2
-
13
-
-
77955559194
-
A proteomic and transcriptional view of acidogenic and solventogenic steady-state cells of clostridium acetobutylicum in a chemostat culture
-
Janssen H, Döring C, Ehrenreich A, Voigt B, Hecker M, Bahl H, Fischer RJ (2010) A proteomic and transcriptional view of acidogenic and solventogenic steady-state cells of Clostridium acetobutylicum in a chemostat culture. Appl Microb Biotechnol 1-18
-
(2010)
Appl Microb Biotechnol
, pp. 1-18
-
-
Janssen, H.1
Döring, C.2
Ehrenreich, A.3
Voigt, B.4
Hecker, M.5
Bahl, H.6
Fischer, R.J.7
-
14
-
-
33744914986
-
Engineering yeasts for xylose metabolism
-
DOI 10.1016/j.copbio.2006.05.008, PII S0958166906000668, Environmental Biotechnology/Energy Biotechnology
-
Jeffries TW (2006) Engineering yeasts for xylose metabolism. Curr Opin Biotechnol 17:320-326 (Pubitemid 43850265)
-
(2006)
Current Opinion in Biotechnology
, vol.17
, Issue.3
, pp. 320-326
-
-
Jeffries, T.W.1
-
15
-
-
0033982936
-
Kegg: Kyoto encyclopedia of genes and genomes
-
Kanehisa M, Goto S (2000) KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28:27
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27
-
-
Kanehisa, M.1
Goto, S.2
-
16
-
-
34047169728
-
Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria
-
DOI 10.1038/nature05624, PII NATURE05624
-
Lo I, Denef V, VerBerkmoes N, Shah M, Goltsman D, DiBartolo G, Tyson G, Allen E, Ram R, Detter J (2007) Strain-resolvedcommunity proteomics reveals recombining genomes of acidophilic bacteria. Nature 446:537-541 (Pubitemid 46514723)
-
(2007)
Nature
, vol.446
, Issue.7135
, pp. 537-541
-
-
Lo, I.1
Denef, V.J.2
VerBerkmoes, N.C.3
Shah, M.B.4
Goltsman, D.5
DiBartolo, G.6
Tyson, G.W.7
Allen, E.E.8
Ram, R.J.9
Detter, J.C.10
Richardson, P.11
Thelen, M.P.12
Hettich, R.L.13
Banfield, J.F.14
-
17
-
-
77954604280
-
Proteome reference map and comparative proteomic analysis between a wild type clostridium acetobutylicum dsm 1731 and its mutant with enhanced butanol tolerance and butanol yield
-
Mao S, Luo Y, Zhang T, Li J, Bao G, Zhu Y, Chen Z, Zhang Y, Li Y, Ma Y (2010) Proteome reference map and comparative proteomic analysis between a wild type Clostridium acetobutylicum DSM 1731 and its mutant with enhanced butanol tolerance and butanol yield. J Proteome Res 9:3046-3061
-
(2010)
J Proteome Res
, vol.9
, pp. 3046-3061
-
-
Mao, S.1
Luo, Y.2
Zhang, T.3
Li, J.4
Bao, G.5
Zhu, Y.6
Chen, Z.7
Zhang, Y.8
Li, Y.9
Ma, Y.10
-
18
-
-
60649087511
-
A label-free quantitative proteomic analysis of the saccharomyces cerevisiae nucleus
-
Mosley AL, Florens L, Wen Z, Washburn MP (2009) A label-free quantitative proteomic analysis of the Saccharomyces cerevisiae nucleus. J Proteomics 72:110-120
-
(2009)
J Proteomics
, vol.72
, pp. 110-120
-
-
Mosley, A.L.1
Florens, L.2
Wen, Z.3
Washburn, M.P.4
-
19
-
-
0034902930
-
Genome sequence and comparative analysis of the solvent-producing bacterium clostridium acetobutylicum
-
Nolling J, Breton G, Omelchenko M, Makarova K, Zeng Q, Gibson R, Lee H, Dubois J, Qiu D, Hitti J (2001) Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum. J Bacteriol 183:4823
-
(2001)
J Bacteriol
, vol.183
, pp. 4823
-
-
Nolling, J.1
Breton, G.2
Omelchenko, M.3
Makarova, K.4
Zeng, Q.5
Gibson, R.6
Lee, H.7
Dubois, J.8
Qiu, D.9
Hitti, J.10
-
20
-
-
0021034718
-
Acetone-butanol production from pentoses by Clostridium acetobutylicum
-
Ounine K, Petitdemange H, Raval G, Gay R (1983) Acetonebutanol production from pentoses by Clostridium acetobutylicum. Biotechnol Lett 5:605-610 (Pubitemid 14226819)
-
(1983)
Biotechnology Letters
, vol.5
, Issue.9
, pp. 605-610
-
-
Ounine, K.1
Petitdemange, H.2
Raval, G.3
Gay, R.4
-
21
-
-
0027343044
-
Cloning, structure, and expression of acid and solvent pathway genes of clostridium acetobutylicum
-
Papoutsakis E, Bennett G (1993) Cloning, structure, and expression of acid and solvent pathway genes of Clostridium acetobutylicum. Biotechnology (Reading, Mass) 25:157
-
(1993)
Biotechnology (Reading, Mass)
, vol.25
, pp. 157
-
-
Papoutsakis, E.1
Bennett, G.2
-
22
-
-
0037277179
-
Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: The yeast proteome
-
DOI 10.1021/pr025556v
-
Peng J, Elias J, Thoreen C, Licklider L, Gygi S (2003) Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome. J Proteome Res 2:43-50 (Pubitemid 36207189)
-
(2003)
Journal of Proteome Research
, vol.2
, Issue.1
, pp. 43-50
-
-
Peng, J.1
Elias, J.E.2
Thoreen, C.C.3
Licklider, L.J.4
Gygi, S.P.5
-
23
-
-
0025107215
-
Purification of acetoacetate decarboxylase from clostridium acetobutylicum atcc 824 and cloning of the acetoacetate decarboxylase gene in escherichia coli
-
Petersen DJ, Bennett GN (1990) Purification of acetoacetate decarboxylase from Clostridium acetobutylicum ATCC 824 and cloning of the acetoacetate decarboxylase gene in Escherichia coli. Appl Environ Microbiol 56:3491
-
(1990)
Appl Environ Microbiol
, vol.56
, pp. 3491
-
-
Petersen, D.J.1
Bennett, G.N.2
-
24
-
-
0026090064
-
Molecular cloning of an alcohol (butanol) dehydrogenase gene cluster from clostridium acetobutylicum atcc 824
-
Petersen DJ, Welch RW, Rudolph FB, Bennett GN (1991) Molecular cloning of an alcohol (butanol) dehydrogenase gene cluster from Clostridium acetobutylicum ATCC 824. J Bacteriol 173:1831
-
(1991)
J Bacteriol
, vol.173
, pp. 1831
-
-
Petersen, D.J.1
Welch, R.W.2
Rudolph, F.B.3
Bennett, G.N.4
-
25
-
-
0035877070
-
Acetone butanol ethanol (ABE) recovery by pervaporation using silicalite-silicone composite membrane from fed-batch reactor of Clostridium acetobutylicum
-
DOI 10.1016/S0376-7388(00)00667-0, PII S0376738800006670
-
Qureshi N, Meagher M, Huang J, Hutkins R (2001) Acetone butanol ethanol (ABE) recovery by pervaporation using silicalite-silicone composite membrane from fed-batch reactor of Clostridium acetobutylicum. J Membr Sci 187:93-102 (Pubitemid 32457934)
-
(2001)
Journal of Membrane Science
, vol.187
, Issue.1-2
, pp. 93-102
-
-
Qureshi, N.1
Meagher, M.M.2
Huang, J.3
Hutkins, R.W.4
-
26
-
-
21344465408
-
Community proteomics of a natural microbial biofilm
-
Ram R, VerBerkmoes N, Thelen M, Tyson G, Baker B, Blake R, Shah M, Hettich R, Banfield J (2005) Community proteomics of a natural microbial biofilm. Science 308:1915
-
(2005)
Science
, vol.308
, pp. 1915
-
-
Ram, R.1
VerBerkmoes, N.2
Thelen, M.3
Tyson, G.4
Baker, B.5
Blake, R.6
Shah, M.7
Hettich, R.8
Banfield, J.9
-
27
-
-
78049495584
-
Genetic organization and regulation of hexose and pentose utilization in the clostridia
-
CRC Press, Boca Raton
-
Reid SJ (2005) Genetic organization and regulation of hexose and pentose utilization in the Clostridia. Handbook on Clostridia. CRC Press, Boca Raton, pp 133-153
-
(2005)
Handbook on Clostridia
, pp. 133-153
-
-
Reid, S.J.1
-
28
-
-
0036146379
-
Changes in protein synthesis and identification of proteins specifically induced during solventogenesis in clostridium acetobutylicum
-
Schaffer S, Isci N, Zickner B, Dürre P (2002) Changes in protein synthesis and identification of proteins specifically induced during solventogenesis in Clostridium acetobutylicum. Electrophoresis 23:110
-
(2002)
Electrophoresis
, vol.23
, pp. 110
-
-
Schaffer, S.1
Isci, N.2
Zickner, B.3
Dürre, P.4
-
29
-
-
80054111671
-
Comparative shotgun proteomic analysis of clostridium acetobutylicum from butanol fermentation using glucose and xylose
-
Sivagnanam K, Raghavan VGS, Shah M, Hettich RL, Verberkmoes NC, Lefsrud MG (2011) Comparative shotgun proteomic analysis of Clostridium acetobutylicum from butanol fermentation using glucose and xylose. Proteome Sci 9:66
-
(2011)
Proteome Sci
, vol.9
, pp. 66
-
-
Sivagnanam, K.1
Raghavan, V.G.S.2
Shah, M.3
Hettich, R.L.4
Verberkmoes, N.C.5
Lefsrud, M.G.6
-
30
-
-
0028855657
-
Characterization of an acetyl-coa c-acetyltransferase (thiolase) gene from clostridium acetobutylicum atcc 824
-
Stim-Herndon KP, Petersen DJ, Bennett GN (1995) Characterization of an acetyl-CoA C-acetyltransferase (thiolase) gene from Clostridium acetobutylicum ATCC 824. Gene 154:81-85
-
(1995)
Gene
, vol.154
, pp. 81-85
-
-
Stim-Herndon, K.P.1
Petersen, D.J.2
Bennett, G.N.3
-
31
-
-
33644765063
-
Proteome analysis and comparison of Clostridium acetobutylicum ATCC 824 and Spo0A strain variants
-
DOI 10.1007/s10295-005-0050-7
-
Sullivan L, Bennett GN (2006) Proteome analysis and comparison of Clostridium acetobutylicum ATCC 824 and Spo0A strain variants. J Ind Microbiol Biotechnol 33:298-308 (Pubitemid 43345195)
-
(2006)
Journal of Industrial Microbiology and Biotechnology
, vol.33
, Issue.4
, pp. 298-308
-
-
Sullivan, L.1
Bennett, G.N.2
-
32
-
-
0036393898
-
Dtaselect and contrast: Tools for assembling and comparing protein identifications from shotgun proteomics
-
Tabb D, McDonald W, Yates J III (2002) DTASelect and contrast: tools for assembling and comparing protein identifications from shotgun proteomics. J Proteome Res 1:21-26
-
(2002)
J Proteome Res
, vol.1
, pp. 21-26
-
-
Tabb, D.1
McDonald, W.2
Yates III, J.3
-
33
-
-
58549089276
-
Shotgun metaproteomics of the human distal gut microbiota
-
Verberkmoes N, Russell A, Shah M, Godzik A, Rosenquist M, Halfvarson J, Lefsrud M, Apajalahti J, Tysk C, Hettich R (2008) Shotgun metaproteomics of the human distal gut microbiota. ISME J 3:179-189
-
(2008)
ISME J
, vol.3
, pp. 179-189
-
-
Verberkmoes, N.1
Russell, A.2
Shah, M.3
Godzik, A.4
Rosenquist, M.5
Halfvarson, J.6
Lefsrud, M.7
Apajalahti, J.8
Tysk, C.9
Hettich, R.10
-
34
-
-
0020528485
-
Enhanced acetone-butanol fermentation by Clostridium acetobutylicum grown on D-xylose in the presence of acetic or butyric acid
-
Yu E, Saddler J (1983) Enhanced acetone butanol fermentation by Clostridium acetobutylicum grown on D xylose in the presence of acetic or butyric acid. FEMS Microbiol Lett 18:103-107 (Pubitemid 13053199)
-
(1983)
FEMS Microbiology Letters
, vol.18
, Issue.1-2
, pp. 103-107
-
-
Yu, E.K.C.1
Saddler, J.N.2
-
35
-
-
69249217800
-
Problems with the microbial production of butanol
-
Zheng YN, Li LZ, Xian M, Ma YJ, Yang JM, Xu X, He DZ (2009) Problems with the microbial production of butanol. J Ind Microbiol Biotechnol 36:1127-1138
-
(2009)
J Ind Microbiol Biotechnol
, vol.36
, pp. 1127-1138
-
-
Zheng, Y.N.1
Li, L.Z.2
Xian, M.3
Ma, Y.J.4
Yang, J.M.5
Xu, X.6
He, D.Z.7
-
36
-
-
34247614401
-
Quantitative shotgun proteomics using a protease with broad specificity and normalized spectral abundance factors
-
DOI 10.1039/b701483j
-
Zybailov BL, Florens L, Washburn MP (2007) Quantitative shotgun proteomics using a protease with broad specificity and normalized spectral abundance factors. Mol BioSyst 3:354-360 (Pubitemid 46674865)
-
(2007)
Molecular BioSystems
, vol.3
, Issue.5
, pp. 354-360
-
-
Zybailov, B.L.1
Florens, L.2
Washburn, M.P.3
|