메뉴 건너뛰기




Volumn 12, Issue 5, 2012, Pages 1010-1019

Biological characterization and phylogenetic analysis of a novel genetic group of Newcastle disease virus isolated from outbreaks in commercial poultry and from backyard poultry flocks in Pakistan

Author keywords

Newcastle disease; Pakistan; Phylogenetic analysis; Poultry; Sequencing

Indexed keywords

EPITOPE; SIALIDASE; VIRUS FUSION PROTEIN; VIRUS HEMAGGLUTININ;

EID: 84863411320     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2012.02.015     Document Type: Article
Times cited : (78)

References (45)
  • 1
    • 0037632146 scopus 로고    scopus 로고
    • A molecular epidemiological study of avian paramyxovirus type 1 (Newcastle disease virus) isolates by phylogenetic analysis of a partial nucleotide sequence of the fusion protein gene
    • Aldous E.W., Mynn J.K., Banks J., Alexander D.J. A molecular epidemiological study of avian paramyxovirus type 1 (Newcastle disease virus) isolates by phylogenetic analysis of a partial nucleotide sequence of the fusion protein gene. Avian Pathol. 2003, 32:239-256.
    • (2003) Avian Pathol. , vol.32 , pp. 239-256
    • Aldous, E.W.1    Mynn, J.K.2    Banks, J.3    Alexander, D.J.4
  • 2
    • 33845381928 scopus 로고    scopus 로고
    • The posterior and the prior in Bayesian phylogenetics
    • Alfaro M.E., Holder M.T. The posterior and the prior in Bayesian phylogenetics. Annu. Rev. Ecol. Evol. Syst. 2006, 37:19-42.
    • (2006) Annu. Rev. Ecol. Evol. Syst. , vol.37 , pp. 19-42
    • Alfaro, M.E.1    Holder, M.T.2
  • 4
    • 0031427808 scopus 로고    scopus 로고
    • Antigenic diversity and similarities detected in avian paramyxovirus type 1 (Newcastle disease virus) isolates using monoclonal antibodies
    • Alexander D.J., Manvell R.J., Lowings J.P., Frost K.M., Collins M.S., Russell P.H., Smith J.E. Antigenic diversity and similarities detected in avian paramyxovirus type 1 (Newcastle disease virus) isolates using monoclonal antibodies. Avian Pathol. 1997, 26:399-418.
    • (1997) Avian Pathol. , vol.26 , pp. 399-418
    • Alexander, D.J.1    Manvell, R.J.2    Lowings, J.P.3    Frost, K.M.4    Collins, M.S.5    Russell, P.H.6    Smith, J.E.7
  • 5
    • 70749131626 scopus 로고    scopus 로고
    • Virus classification by pairwise sequence comparison (PASC)
    • Elsevier, Oxford, B.W.J. Mahy, M.H.V. Van Regenmortel (Eds.)
    • Bao Y., Kapustin Y., Tatusova T. Virus classification by pairwise sequence comparison (PASC). "Encyclopedia of Virology", vol. 5 2008, Elsevier, Oxford. B.W.J. Mahy, M.H.V. Van Regenmortel (Eds.).
    • (2008) "Encyclopedia of Virology", vol. 5
    • Bao, Y.1    Kapustin, Y.2    Tatusova, T.3
  • 9
    • 0036883360 scopus 로고    scopus 로고
    • The occurrence of five major Newcastle disease virus genotypes (II, IV, V, VI and VIIb) in Bulgaria between 1959 and 1996
    • Czegledi A., Herczeg J., Hadjiev G., Doumanova L., Wehmann E., Lomniczi B. The occurrence of five major Newcastle disease virus genotypes (II, IV, V, VI and VIIb) in Bulgaria between 1959 and 1996. Epidemiol. Infect. 2002, 129:679-688.
    • (2002) Epidemiol. Infect. , vol.129 , pp. 679-688
    • Czegledi, A.1    Herczeg, J.2    Hadjiev, G.3    Doumanova, L.4    Wehmann, E.5    Lomniczi, B.6
  • 10
    • 33745352888 scopus 로고    scopus 로고
    • Third genome size category of avian paramyxovirus serotype 1 (Newcastle disease virus) and evolutionary implications
    • Czegledi A., Ujvari D., Somogyi E., Wehmann E., Werner O., Lomniczi B. Third genome size category of avian paramyxovirus serotype 1 (Newcastle disease virus) and evolutionary implications. Virus Res. 2006, 120:36-48.
    • (2006) Virus Res. , vol.120 , pp. 36-48
    • Czegledi, A.1    Ujvari, D.2    Somogyi, E.3    Wehmann, E.4    Werner, O.5    Lomniczi, B.6
  • 11
    • 20044375021 scopus 로고    scopus 로고
    • Virulence of Newcastle disease virus is determined by the cleavage site of the fusion protein and by both the stem region and globular head of the haemagglutinin-neuraminidase protein
    • de Leeuw O.S., Koch G., Hartog L., Ravenshorst N., Peeters B.P. Virulence of Newcastle disease virus is determined by the cleavage site of the fusion protein and by both the stem region and globular head of the haemagglutinin-neuraminidase protein. J. Gen. Virol. 2005, 86:1759-1769.
    • (2005) J. Gen. Virol. , vol.86 , pp. 1759-1769
    • de Leeuw, O.S.1    Koch, G.2    Hartog, L.3    Ravenshorst, N.4    Peeters, B.P.5
  • 12
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 1999, 41:95-98.
    • (1999) Nucleic Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.1
  • 13
    • 0032729372 scopus 로고    scopus 로고
    • Two novel genetic groups (VIIb and VIII) responsible for recent Newcastle disease outbreaks in Southern Africa, one (VIIb) of which reached Southern Europe
    • Herczeg J., Wehmann E., Bragg R.R., Travassos Dias P.M., Hadjiev G., Werner O., Lomniczi B. Two novel genetic groups (VIIb and VIII) responsible for recent Newcastle disease outbreaks in Southern Africa, one (VIIb) of which reached Southern Europe. Arch. Virol. 1999, 144:2087-2099.
    • (1999) Arch. Virol. , vol.144 , pp. 2087-2099
    • Herczeg, J.1    Wehmann, E.2    Bragg, R.R.3    Travassos Dias, P.M.4    Hadjiev, G.5    Werner, O.6    Lomniczi, B.7
  • 14
    • 84863409717 scopus 로고    scopus 로고
    • ICTV. International Committee on Taxonomy of Viruses, Virus Taxonomy.
    • ICTV, 2009. International Committee on Taxonomy of Viruses, Virus Taxonomy.
    • (2009)
  • 15
    • 33645210859 scopus 로고    scopus 로고
    • Genome sequence of the thermostable Newcastle disease virus (strain I-2) reveals a possible phenotypic locus
    • Kattenbelt J.A., Meers J., Gould A.R. Genome sequence of the thermostable Newcastle disease virus (strain I-2) reveals a possible phenotypic locus. Vet. Microbiol. 2006, 114:134-141.
    • (2006) Vet. Microbiol. , vol.114 , pp. 134-141
    • Kattenbelt, J.A.1    Meers, J.2    Gould, A.R.3
  • 17
    • 67650914917 scopus 로고    scopus 로고
    • A Y526Q mutation in the Newcastle disease virus HN protein reduces its functional activities and attenuates virus replication and pathogenicity
    • Khattar S.K., Yan Y., Panda A., Collins P.L., Samal S.K. A Y526Q mutation in the Newcastle disease virus HN protein reduces its functional activities and attenuates virus replication and pathogenicity. J. Virol. 2009, 83:7779-7782.
    • (2009) J. Virol. , vol.83 , pp. 7779-7782
    • Khattar, S.K.1    Yan, Y.2    Panda, A.3    Collins, P.L.4    Samal, S.K.5
  • 18
    • 21444456320 scopus 로고    scopus 로고
    • Paramyxovirus mRNA editing, the "rule of six" and error catastrophe: a hypothesis
    • Kolakofsky D., Roux L., Garcin D., Ruigrok R.W. Paramyxovirus mRNA editing, the "rule of six" and error catastrophe: a hypothesis. J. Gen. Virol. 2005, 86:1869-1877.
    • (2005) J. Gen. Virol. , vol.86 , pp. 1869-1877
    • Kolakofsky, D.1    Roux, L.2    Garcin, D.3    Ruigrok, R.W.4
  • 19
    • 0037593215 scopus 로고    scopus 로고
    • Pathotypical and genotypical characterization of strains of Newcastle disease virus isolated from outbreaks in chicken and goose flocks in some regions of China during 1985-2001
    • Liu X.F., Wan H.Q., Ni X.X., Wu Y.T., Liu W.B. Pathotypical and genotypical characterization of strains of Newcastle disease virus isolated from outbreaks in chicken and goose flocks in some regions of China during 1985-2001. Arch. Virol. 2003, 148:1387-1403.
    • (2003) Arch. Virol. , vol.148 , pp. 1387-1403
    • Liu, X.F.1    Wan, H.Q.2    Ni, X.X.3    Wu, Y.T.4    Liu, W.B.5
  • 23
    • 0028858321 scopus 로고
    • The role of individual oligosaccharide chains in the activities of the HN glycoprotein of Newcastle disease virus
    • McGinnes L.W., Morrison T.G. The role of individual oligosaccharide chains in the activities of the HN glycoprotein of Newcastle disease virus. Virology 1995, 212:398-410.
    • (1995) Virology , vol.212 , pp. 398-410
    • McGinnes, L.W.1    Morrison, T.G.2
  • 24
    • 72149126867 scopus 로고    scopus 로고
    • Newcastle disease: evolution of genotypes and the related diagnostic challenges
    • Miller P.J., Decanini E.L., Afonso C.L. Newcastle disease: evolution of genotypes and the related diagnostic challenges. Infect. Genet. Evol. 2010, 10:26-35.
    • (2010) Infect. Genet. Evol. , vol.10 , pp. 26-35
    • Miller, P.J.1    Decanini, E.L.2    Afonso, C.L.3
  • 25
    • 67650725425 scopus 로고    scopus 로고
    • Evolutionary dynamics of Newcastle disease virus
    • Miller P.J., Kim L.M., Ip H.S., Afonso C.L. Evolutionary dynamics of Newcastle disease virus. Virology 2009, 391:64-72.
    • (2009) Virology , vol.391 , pp. 64-72
    • Miller, P.J.1    Kim, L.M.2    Ip, H.S.3    Afonso, C.L.4
  • 26
    • 34648846704 scopus 로고    scopus 로고
    • Antigenic differences among Newcastle disease virus strains of different genotypes used in vaccine formulation affect viral shedding after a virulent challenge
    • Miller P.J., King D.J., Afonso C.L., Suarez D.L. Antigenic differences among Newcastle disease virus strains of different genotypes used in vaccine formulation affect viral shedding after a virulent challenge. Vaccine 2007, 25:7238-7246.
    • (2007) Vaccine , vol.25 , pp. 7238-7246
    • Miller, P.J.1    King, D.J.2    Afonso, C.L.3    Suarez, D.L.4
  • 27
    • 80052324920 scopus 로고    scopus 로고
    • Whole genome sequencing and characterization of a virulent Newcastle disease virus isolated from an outbreak in Sweden
    • Munir M., Linde A.M., Zohari S., Stahl K., Baule C., Engstrom B., Renstrom B., Berg M. Whole genome sequencing and characterization of a virulent Newcastle disease virus isolated from an outbreak in Sweden. Virus Genes 2011, 43:261-271.
    • (2011) Virus Genes , vol.43 , pp. 261-271
    • Munir, M.1    Linde, A.M.2    Zohari, S.3    Stahl, K.4    Baule, C.5    Engstrom, B.6    Renstrom, B.7    Berg, M.8
  • 28
    • 77953816927 scopus 로고    scopus 로고
    • Complete genome analysis of an avian paramyxovirus type 1 strain isolated in 1994 from an asymptomatic black-headed gull (Larus ridibundus) in southern Sweden
    • Munir M., Linde A.M., Zohari S., Stahl K., Baule C., Holm K., Engstrom B., Berg M. Complete genome analysis of an avian paramyxovirus type 1 strain isolated in 1994 from an asymptomatic black-headed gull (Larus ridibundus) in southern Sweden. Avian Dis. 2010, 54:923-930.
    • (2010) Avian Dis. , vol.54 , pp. 923-930
    • Munir, M.1    Linde, A.M.2    Zohari, S.3    Stahl, K.4    Baule, C.5    Holm, K.6    Engstrom, B.7    Berg, M.8
  • 29
    • 84855460135 scopus 로고    scopus 로고
    • Detection and phylogenetic analysis of Peste des petits ruminants virus isolated from outbreaks in Punjab, Pakistan
    • Munir M., Zohari S., Saeed A., Khan Q.M., Abubakar M., Leblanc N., Berg M. Detection and phylogenetic analysis of Peste des petits ruminants virus isolated from outbreaks in Punjab, Pakistan. Transbound Emerg. Dis. 2011, 59:85-93.
    • (2011) Transbound Emerg. Dis. , vol.59 , pp. 85-93
    • Munir, M.1    Zohari, S.2    Saeed, A.3    Khan, Q.M.4    Abubakar, M.5    Leblanc, N.6    Berg, M.7
  • 30
    • 77958107385 scopus 로고    scopus 로고
    • Seroligical status of Newcastle disease in broilers and layers in Faisalabad and Surronding districts
    • Numan M., Zahoor M.A., Khan H.A., Siddique M. Seroligical status of Newcastle disease in broilers and layers in Faisalabad and Surronding districts. Pak. Vet. J. 2005, 25:55-58.
    • (2005) Pak. Vet. J. , vol.25 , pp. 55-58
    • Numan, M.1    Zahoor, M.A.2    Khan, H.A.3    Siddique, M.4
  • 31
    • 84863409716 scopus 로고    scopus 로고
    • OIE. Newcastle disease. Chapter 2.1.15. OIE Manual of Standards for Diagnostic Tests and Vaccines, in Manual of Diagnostic Tests and Vaccines for Terrestrial Animals: Mammals, Birds and Bees. Office International des Epizooties, Paris
    • OIE, 2004. Newcastle disease. Chapter 2.1.15. OIE Manual of Standards for Diagnostic Tests and Vaccines, in Manual of Diagnostic Tests and Vaccines for Terrestrial Animals: Mammals, Birds and Bees. Office International des Epizooties, Paris, pp. 270-282.
    • (2004) , pp. 270-282
  • 32
    • 2342544913 scopus 로고    scopus 로고
    • Loss of N-linked glycosylation from the hemagglutinin-neuraminidase protein alters virulence of Newcastle disease virus
    • Panda A., Elankumaran S., Krishnamurthy S., Huang Z., Samal S.K. Loss of N-linked glycosylation from the hemagglutinin-neuraminidase protein alters virulence of Newcastle disease virus. J. Virol. 2004, 78:4965-4975.
    • (2004) J. Virol. , vol.78 , pp. 4965-4975
    • Panda, A.1    Elankumaran, S.2    Krishnamurthy, S.3    Huang, Z.4    Samal, S.K.5
  • 33
    • 38649119432 scopus 로고    scopus 로고
    • F gene recombination between genotype II and VII Newcastle disease virus
    • Qin Z., Sun L., Ma B., Cui Z., Zhu Y., Kitamura Y., Liu W. F gene recombination between genotype II and VII Newcastle disease virus. Virus Res. 2008, 131:299-303.
    • (2008) Virus Res. , vol.131 , pp. 299-303
    • Qin, Z.1    Sun, L.2    Ma, B.3    Cui, Z.4    Zhu, Y.5    Kitamura, Y.6    Liu, W.7
  • 34
    • 0026548159 scopus 로고
    • Population growth makes waves in the distribution of pairwise genetic differences
    • Rogers A.R., Harpending H. Population growth makes waves in the distribution of pairwise genetic differences. Mol. Biol. Evol. 1992, 9:552-569.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 552-569
    • Rogers, A.R.1    Harpending, H.2
  • 35
    • 0242288634 scopus 로고    scopus 로고
    • Contribution of the length of the HN protein and the sequence of the F protein cleavage site to Newcastle disease virus pathogenicity
    • Romer-Oberdorfer A., Werner O., Veits J., Mebatsion T., Mettenleiter T.C. Contribution of the length of the HN protein and the sequence of the F protein cleavage site to Newcastle disease virus pathogenicity. J. Gen. Virol. 2003, 84:3121-3129.
    • (2003) J. Gen. Virol. , vol.84 , pp. 3121-3129
    • Romer-Oberdorfer, A.1    Werner, O.2    Veits, J.3    Mebatsion, T.4    Mettenleiter, T.C.5
  • 36
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 37
    • 84863398793 scopus 로고    scopus 로고
    • Pakistan poultry sector still on an upward swing
    • Sadiq M. Pakistan poultry sector still on an upward swing. World Poultry 2004, 20:10-11.
    • (2004) World Poultry , vol.20 , pp. 10-11
    • Sadiq, M.1
  • 39
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 40
    • 0023235834 scopus 로고
    • Structural comparison of the cleavage-activation site of the fusion glycoprotein between virulent and avirulent strains of Newcastle disease virus
    • Toyoda T., Sakaguchi T., Imai K., Inocencio N.M., Gotoh B., Hamaguchi M., Nagai Y. Structural comparison of the cleavage-activation site of the fusion glycoprotein between virulent and avirulent strains of Newcastle disease virus. Virology 1987, 158:242-247.
    • (1987) Virology , vol.158 , pp. 242-247
    • Toyoda, T.1    Sakaguchi, T.2    Imai, K.3    Inocencio, N.M.4    Gotoh, B.5    Hamaguchi, M.6    Nagai, Y.7
  • 41
    • 18144444628 scopus 로고    scopus 로고
    • Phylogenetic analysis reveals extensive evolution of avian paramyxovirus type 1 strains of pigeons (Columba livia) and suggests multiple species transmission
    • Ujvari D., Wehmann E., Kaleta E.F., Werner O., Savic V., Nagy E., Czifra G., Lomniczi B. Phylogenetic analysis reveals extensive evolution of avian paramyxovirus type 1 strains of pigeons (Columba livia) and suggests multiple species transmission. Virus Res. 2003, 96:63-73.
    • (2003) Virus Res. , vol.96 , pp. 63-73
    • Ujvari, D.1    Wehmann, E.2    Kaleta, E.F.3    Werner, O.4    Savic, V.5    Nagy, E.6    Czifra, G.7    Lomniczi, B.8
  • 43
    • 79953058042 scopus 로고    scopus 로고
    • Molecular characterization of Newcastle disease viruses in Ostriches (Struthio camelus L.): further evidences of recombination within avian paramyxovirus type 1
    • Yin Y., Cortey M., Zhang Y., Cui S., Dolz R., Wang J., Gong Z. Molecular characterization of Newcastle disease viruses in Ostriches (Struthio camelus L.): further evidences of recombination within avian paramyxovirus type 1. Vet. Microbiol. 2011, 149:324-329.
    • (2011) Vet. Microbiol. , vol.149 , pp. 324-329
    • Yin, Y.1    Cortey, M.2    Zhang, Y.3    Cui, S.4    Dolz, R.5    Wang, J.6    Gong, Z.7
  • 44
    • 0034798139 scopus 로고    scopus 로고
    • Characterization of newly emerging Newcastle disease virus isolates from the People's Republic of China and Taiwan
    • Yu L., Wang Z., Jiang Y., Chang L., Kwang J. Characterization of newly emerging Newcastle disease virus isolates from the People's Republic of China and Taiwan. J. Clin. Microbiol. 2001, 39:3512-3519.
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 3512-3519
    • Yu, L.1    Wang, Z.2    Jiang, Y.3    Chang, L.4    Kwang, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.