First report on interferon related developmental regulator-1 from Macrobrachium rosenbergii: Bioinformatic analysis and gene expression

Fish and Shellfish Immunology

Volumn 32, Issue 5, 2012, Pages 929-933

  Arockiaraj, Jesu ^a   Easwvaran, Sarasvathi ^a   Vanaraja, Puganeshwaran ^a   Singh, Arun ^b   Othman, Rofina Yasmin ^a   Bhassu, Subha ^a  

^a UNIVERSITY OF MALAYA   (Malaysia)

^b ST XAVIER S COLLEGE AUTONOMOUS   (India)

Author keywords

Bioinformatic analysis; Gene expression; Interferon; Macrobrachium rosenbergii; Virus

Indexed keywords

INFECTIOUS HYPODERMAL AND HEMATOPOIETIC NECROSIS VIRUS; MACROBRACHIUM ROSENBERGII;

EID: 84863398776     PISSN: 10504648     EISSN: 10959947     Source Type: Journal    
DOI: 10.1016/j.fsi.2012.02.011     Document Type: Article

References (29)

1. Fensterl V., Sen G.C. Interferons and viral infections. Biofactors 2009, 35:14-20.
2. Sen G.C. Viruses and interferons. Annu Rev Microbiol 2001, 55:255-281.
3. Stark G.R., Kerr I.M., William B.R.G., Silverman R.H., Schreiber R.D. How cells respond to interferons. Annu Rev Biochem 1998, 67:227-264.
4. Bieniasz P.D. Intrinsic immunity: a front-line defense against viral attack. Nat Immunol 2004, 5:1109-1115.
5. Medzhitov R., Janeway C. Innate immunity: the virtues of a non-clonal system of recognition. Cell 1997, 91:295-298.
6. Honda K., Taniguchi T. IRFs: master regulators of signaling by Toll-like receptors and cytosolic pattern-recognition receptors. Nat Rev Immunol 2006, 6:644-658.
7. Barnes B., Lubyova B., Pitha P.M. On the role of IRF in host defense. J Interferon Cytokine Res 2002, 22:59-71.
8. Tanaka N., Ishihara M., Lamphier M.S., Nozawa H., Matsuyama T., Mak T.W., et al. Cooperation of the tumor suppressors IRF-1 and p53 in response to DNA damage. Nature 1996, 382:816-818.
9. Ohteki T., Yoshida H., Matsuyama T., Duncan G.S., Mak T.W., Ohashi P.S. The transcription factor interferon regulatory factor 1 (IRF-1) is important during the maturation of natural killer 1.1{thorn}T cell receptor-a/b{thorn} (NK1{thorn} T) cells, natural killer cells, and intestinal intraepithelial T cells. J Exp Med 1998, 187:967-972.
10. Kirchhoff S., Schaper F., Hauser H. Interferon regulatory factor (IRF-1) mediates cell growth inhibition by transactivation of downstream target genes. Nucl Acids Res 1993, 21:2881-2889.
11. Nozawa H., Oda E., Nakao K., Ishihara M., Ueda S., Yokochi T., et al. Loss of transcription factor IRF-1 affects tumor susceptibility in mice carrying the Ha-ras transgene or nullizygosity for p53. Genes Dev 1999, 13:1240-1245.
12. Tanaka N., Ishihara M., Kitagawa M., Harada H., Kimura T., Matsuyama T., et al. Cellular commitment to oncogene-induced transformation or apoptosis is dependent on the transcription factor IRF-1. Cell 1994, 77:829-839.
13. Robertsen B. The interferon system of teleost fish. Fish Shellfish Immunol 2006, 20:172-191.
14. McBeath A.J.A., Snow M., Secombes C.J., Ellis A.E., Collet B. Expression kinetics of interferon and interferon-induced genes in Atlantic salmon (Salmo salar) following infection with infectious pancreatic necrosis virus and infectious salmon anaemia virus. Fish Shellfish Immunol 2007, 22:230-241.
15. Arcierl J.M., Herman F., Lightner D.V., Redman R.M., Niari J., Bonarnil J.R. A viral disease associated with mortalities in hatchery-reared postlarvae of the giant freshwater prawn Macrobrachium rosenbergii. Dis Aqua Organ 1999, 38:177-181.
16. Arockiaraj J., Easwvaran S., Vanaraja P., Singh A., Othman R.Y., Bhassu S. Effect of infectious hypodermal and haematopoietic necrosis virus (IHHNV) infection on caspase 3c expression and activity in freshwater prawn Macrobrachium rosenbergii. Fish Shellfish Immunol 2011, 32:161-169.
17. Dhar A.K., Bowers R.M., Licon K.S., Veazey G., Read B. Validation of reference genes for quantitative measurement of immune gene expression in shrimp. Mol Immunol 2009, 46:1688-1695.
18. Livak K.J., Schmittgenm T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods 2001, 25:402-408.
19. Zhang Y.B., Jiang J., Chen Y.D., Zhu R., Shi Y., Zhang Q.Y., et al. The innate immune response to grass carp hemorrhagic virus (GCHV) in cultured Carassius auratus blastulae (CAB) cells. Dev Comp Immunol 2007, 31:232-243.
20. Miyamoto M., Fujita T., Kimura Y., Maruyama M., Harada H., Sudo Y., et al. Regulated expression of a gene encoding a nuclear factor, IRF-1, that specifically binds to IFN-b gene regulatory element. Cell 1988, 54:903-913.
21. Kimura T., Nakayama K., Penninger J., Kitagawa M., Harada H., Matsuyama T., et al. Involvement of the IRF-1 transcription factor in antiviral responses to interferons. Science 1994, 64:1921-1924.
22. Sachs A.B. Messenger RNA degradation in eukaryotes. Cell 1993, 74:413-421.
23. Escalante C.R., Yie J., Thanos D., Aggarwal A.K. Structure of IRF-1 with bound DNA reveals determinants of interferon regulation. Nature 1998, 391:103-106.
24. Eroshkin A., Mushegian A. Conserved transactivation domain shared by interferon regulatory factors and Smad morphogens. J Mol Med 1999, 77:403-405.
25. Uegaki K., Shirakawa M., Harada H., Taniguchi T., Kyogoku Y. Secondary structure and folding topology of the DNA binding domain of interferon regulatory factor 2, as revealed by NMR spectroscopy. FEBS Lett 1995, 359:184-188.
26. Buanne P., Incerti B., Guardavaccaro D., Avvantaggiato V., Simeone A., Tirone F. Cloning of the human interferon-related developmental regulator (ifrd1) gene coding for the pc4 protein, a member of a novel family of developmentally regulated genes. Genomics 1998, 51:233-242.
27. Hu G., Yin X., Xia J., Dong X., Zhang J., Liu Q. Molecular cloning and characterization of interferon regulatory factor 7 (IRF-7) in Japanese flounder, Paralichthys olivaceus. Fish Shellfish Immunol 2010, 29:963-971.
28. Hu G., Xia J., Lou H., Liu Q., Lin J., Yin X., et al. Cloning and expression analysis of interferon regulatory factor 7 (IRF-7) in turbot, Scophthalmus maximus. Dev Comp Immunol 2011, 35:416-420.
29. Paun A., Pitha P.M. The IRF family revisited. Biochimie 2007, 89:744-753.