메뉴 건너뛰기




Volumn 9, Issue 4, 2011, Pages 1420-1443

A computational model of cell polarization and motility coupling mechanics and biochemistry

Author keywords

2D eukaryotic cell motility; Deforming domain; Elastic perimeter; Immersed boundary method; Polarization; Protrusion; Reaction diffusion system; Simulation; Tension; Wave pinning

Indexed keywords

DEFORMING DOMAIN; ELASTIC PERIMETER; EUKARYOTIC CELLS; IMMERSED-BOUNDARY METHOD; PROTRUSION; REACTION DIFFUSION SYSTEMS; SIMULATION; TENSION; WAVE-PINNING;

EID: 84863393224     PISSN: 15403459     EISSN: 15403467     Source Type: Journal    
DOI: 10.1137/100815335     Document Type: Article
Times cited : (64)

References (36)
  • 1
    • 0000079636 scopus 로고    scopus 로고
    • Cytoplasm dynamics and cell motion: Two-phase flow models
    • DOI 10.1016/S0025-5564(98)10067-6, PII S0025556498100676
    • W. ALT AND M. DEMBO, Cyotplasm dynamics and cell motion: Two-phase flow models., Math. Biosci., 156 (1999), pp. 207-228. (Pubitemid 29157692)
    • (1999) Mathematical Biosciences , vol.156 , Issue.1-2 , pp. 207-228
    • Alt, W.1    Dembo, M.2
  • 2
    • 0031669602 scopus 로고    scopus 로고
    • A computational model of ameboid deformation and locomotion
    • DOI 10.1007/s002490050163
    • D. BOTTINO AND L. FAUCI, A computational model of ameboid deformation and locomotion, Eur. Biophys. J., 27 (1998), pp. 532-539. (Pubitemid 28414893)
    • (1998) European Biophysics Journal , vol.27 , Issue.5 , pp. 532-539
    • Bottino, D.C.1    Fauci, L.J.2
  • 3
    • 52149120381 scopus 로고    scopus 로고
    • Modeling robustness tradeoffs in yeast cell polarization induced by spatial gradients
    • C. CHOU, Q. NIE, AND T. YI, Modeling robustness tradeoffs in yeast cell polarization induced by spatial gradients, PLoS ONE, 3 (2008), p. 3103.
    • (2008) PLoS ONE , vol.3 , pp. 3103
    • Chou, C.1    Nie, Q.2    Yi, T.3
  • 4
    • 0036347671 scopus 로고    scopus 로고
    • The method of regularized Stokeslets
    • R. CORTEZ, The method of regularized Stokeslets, SIAM J. Sci. Comput., 23 (2001), pp. 1204-1225.
    • (2001) SIAM J. Sci. Comput , vol.23 , pp. 1204-1225
    • Cortez, R.1
  • 5
    • 15844383109 scopus 로고    scopus 로고
    • The method of regularized Stokeslets in three dimensions: Analysis, validation, and application to helical swimming
    • DOI 10.1063/1 .1830486
    • R. CORTEZ, L. FAUCI, AND A. MEDOVIKOV, The method of regularized Stokeslets in three dimensions: Analysis, validation, and application to helical swimming., Phys. Fluids, (2005), DOI 10.1063/1 .1830486.
    • (2005) Phys Fluids
    • Cortez, R.1    Fauci, L.2    Medovikov, A.3
  • 6
    • 0034775815 scopus 로고    scopus 로고
    • Immersed interface methods for Neumann and related problems in two and three dimensions
    • DOI 10.1137/S1064827597327541, PII S1064827597327541
    • A. FOGELSON AND J. KEENER, Immersed interface methods for Neumann and related problems in two and three dimensions, SIAM J. Sci. Comput., 22 (2000), pp. 1630-1654. (Pubitemid 33013419)
    • (2001) SIAM Journal of Scientific Computing , vol.22 , Issue.5 , pp. 1630-1654
    • Fogelson, A.L.1    Keener, J.P.2
  • 7
    • 0842306339 scopus 로고    scopus 로고
    • A continuum model of motility in ameboid cells
    • DOI 10.1016/j.bulm.2003.08.007
    • M. GRACHEVA AND H. OTHMER, A continuum model of motility in ameboid cells, Bull. Math. Biol., 66 (2004), pp. 167-193. (Pubitemid 38178965)
    • (2004) Bulletin of Mathematical Biology , vol.66 , Issue.1 , pp. 167-193
    • Gracheva, M.E.1    Othmer, H.G.2
  • 9
    • 33744531652 scopus 로고    scopus 로고
    • Mechanics of neurophil phagocytosis: Experiments and quantitative models
    • DOI 10.1242/jcs.02876
    • M. HERANT, V. HEINRICH, AND M. DEMBO, Mechanics of neutrophil phagocytosis: Experiments and qualitative models, J. Cell Sci., 119 (2006), pp. 1903-1913. (Pubitemid 43811015)
    • (2006) Journal of Cell Science , vol.119 , Issue.9 , pp. 1903-1913
    • Herant, M.1    Heinrich, V.2    Dembo, M.3
  • 10
    • 0038636530 scopus 로고    scopus 로고
    • The mechanics of neutrophils: Synthetic modeling of three experiments
    • M. HERANT, W. MARGANSKI, AND M. DEMBO, The mechanics of neutrophils: Synthetic modeling of three experiments, Biophys. J., 84 (2003), pp. 3389-3413. (Pubitemid 36531785)
    • (2003) Biophysical Journal , vol.84 , Issue.5 , pp. 3389-3413
    • Herant, M.1    Marganski, W.A.2    Dembo, M.3
  • 12
    • 84896693941 scopus 로고    scopus 로고
    • Numerical solution of the 2D Poisson equation on an irregular domain with Robin boundary conditions
    • Z. JOMAA AND C. MACASKILL, Numerical solution of the 2D Poisson equation on an irregular domain with Robin boundary conditions, Aust. N. Z. Indust. Appl. Math., 50 (2008), pp. C413-C428.
    • (2008) Aust. N. Z. Indust. Appl. Math , vol.50
    • Jomaa, Z.1    Macaskill, C.2
  • 13
    • 44349186015 scopus 로고    scopus 로고
    • Mechanism of shape determination in motile cells
    • DOI 10.1038/nature06952, PII NATURE06952
    • K. KEREN, Z. PINCUS, G. M. ALLEND, E. L. BARNHART, G. MARRIOTT, A. MOGILNER, AND J. THERIOT, Mechanism of shape determination in motile cells, Nature, 453 (2008), pp. 475-480. (Pubitemid 351733321)
    • (2008) Nature , vol.453 , Issue.7194 , pp. 475-480
    • Keren, K.1    Pincus, Z.2    Allen, G.M.3    Barnhart, E.L.4    Marriott, G.5    Mogilner, A.6    Theriot, J.A.7
  • 14
    • 33846815127 scopus 로고    scopus 로고
    • Receptor-mediated and intrinsic polarization and their interaction in chemotaxing cells
    • DOI 10.1529/biophysj.106.087353
    • J. KRISHNAN AND P. IGLESIAS, Receptor-mediated and intrinsic polarization and their interaction in chemotaxing cells, Biophys. J., 92 (2007), pp. 816-830. (Pubitemid 46203212)
    • (2007) Biophysical Journal , vol.92 , Issue.3 , pp. 816-830
    • Krishnan, J.1    Iglesias, P.A.2
  • 16
    • 38049013847 scopus 로고    scopus 로고
    • The immersed interface method: Numerical solutions of pdes involving interfaces and irregular domains frontiers
    • SIAM, Philadelphia
    • Z. LI AND K. ITO, The Immersed Interface Method: Numerical Solutions of PDEs Involving Interfaces and Irregular Domains, Frontiers Appl. Math. 33, SIAM, Philadelphia, 2006.
    • (2006) Appl. Math , vol.33
    • Li, Z.1    Ito, K.2
  • 17
    • 10044250005 scopus 로고    scopus 로고
    • 3 response in Dictyostelium cells
    • DOI 10.1529/biophysj.104.045484
    • L. MA, C. JANETOPOULOS, L. YANG, P. DEVREOTES, AND P. IGLESIAS, Two complementary, local excitation, global inhibition mechanisms acting in parallel can explain the chemoattractant-induced regulation of PI (3, 4, 5) P3 response in dictyostelium cells, Biophys. J., 87 (2004), pp. 3764-3774. (Pubitemid 39602884)
    • (2004) Biophysical Journal , vol.87 , Issue.6 , pp. 3764-3774
    • Ma, L.1    Janetopoulos, C.2    Yang, L.3    Devreotes, P.N.4    Iglesias, P.A.5
  • 20
    • 0032823984 scopus 로고    scopus 로고
    • Orientation of chemotactic cells and growth cones: Models and mechanisms
    • H. MEINHARDT, Orientation of chemotactic cells and growth cones: Models and mechanisms, J. Cell Sci., 112 (1999), pp. 2867-2874. (Pubitemid 29430032)
    • (1999) Journal of Cell Science , vol.112 , Issue.17 , pp. 2867-2874
    • Meinhardt, H.1
  • 21
    • 43649095122 scopus 로고    scopus 로고
    • Wave-pinning and cell polarity from a bistable reactiondiffusion system
    • Y. MORI, A. JILKINE, AND L. EDELSTEIN-KESHET, Wave-pinning and cell polarity from a bistable reactiondiffusion system, Biophys. J., 94 (2008), pp. 3684-3697.
    • (2008) Biophys. J , vol.94 , pp. 3684-3697
    • Mori, Y.1    Jilkine, A.2    Edelstein-Keshet, L.3
  • 22
    • 33847017264 scopus 로고    scopus 로고
    • Unconditionally stable discretizations of the immersed boundary equations
    • E. P. NEWREN, A. L. FOGELSON, R. D.GUY, AND R. M. KIRBY, Unconditionally stable discretizations of the immersed boundary equations, J. Comput. Phys., 222 (2007), pp. 702-719.
    • (2007) J Comput. Phys , vol.222 , pp. 702-719
    • Newren, E.P.1    Fogelson, A.L.2    Guy, R.D.3    Kirby, R.M.4
  • 24
    • 33751544551 scopus 로고    scopus 로고
    • The immersed boundary method
    • C. PESKIN, The immersed boundary method, Acta Numer., 11 (2002), pp. 479-517.
    • (2002) Acta Numer , vol.11 , pp. 479-517
    • Peskin, C.1
  • 26
    • 21844458415 scopus 로고    scopus 로고
    • Multiscale two-dimensional modeling of a motile simple-shaped cell
    • DOI 10.1137/04060370X
    • B. RUBINSTEIN, K. JACOBSON, AND A. MOGILNER, Multiscale two-dimensional modeling of a motile simpleshaped cell, Multiscale Model. Simul., 3 (2005), pp. 413-439. (Pubitemid 40951979)
    • (2005) Multiscale Modeling and Simulation , vol.3 , Issue.2 , pp. 413-439
    • Rubinstein, B.1    Jacobson, K.2    Mogilner, A.3
  • 27
    • 43649107536 scopus 로고    scopus 로고
    • Exploring the control circuit of cell migration by mathematical modeling
    • J. SATULOVSKY, R. LUI, AND Y. WANG, Exploring the control circuit of cell migration by mathematical modeling, Biophys. J., 94 (2008), pp. 3671-3683.
    • (2008) Biophys. J , vol.94 , pp. 3671-3683
    • Satulovsky, J.1    Lui, R.2    Wang, Y.3
  • 28
    • 0009001404 scopus 로고    scopus 로고
    • Analysis of stiffness in the immersed boundary method and implications for time-stepping schemes
    • J. M. STOCKIE AND B. T. R.WETTON, Analysis of stiffness in the immersed boundary method and implications for time-stepping schemes., J. Comput. Phys., 154 (1999), pp. 41-64.
    • (1999) J. Comput. Phys , vol.154 , pp. 41-64
    • Stockie, J.M.1    Wetton, B.T.R.2
  • 29
    • 78149334276 scopus 로고    scopus 로고
    • Simulating biochemical signaling networks in complex moving geometries
    • W. STRYCHALSKI, D.ADALSTEINSSON, AND T. ELSTON, Simulating biochemical signaling networks in complex moving geometries, SIAM J. Sci. Comput., 32 (2010), pp. 3039-3070.
    • (2010) SIAM J. Sci. Comput , vol.32 , pp. 3039-3070
    • Strychalski, W.1    Adalsteinsson, D.2    Elston, T.3
  • 30
    • 79957462278 scopus 로고    scopus 로고
    • Tether force constraints in Stokes flow by the immersed boundary method on a periodic domain
    • J. TERAN AND C. PESKIN, Tether force constraints in Stokes flow by the immersed boundary method on a periodic domain, SIAM J. Sci. Comput., 31 (2009), pp. 3404-3416.
    • (2009) SIAM J. Sci. Comput , vol.31 , pp. 3404-3416
    • Teran, J.1    Peskin, C.2
  • 31
    • 55549091688 scopus 로고    scopus 로고
    • Boundary integral solutions of coupled Stokes and Darcy flows
    • S. TLUPOVA AND R. CORTEZ, Boundary integral solutions of coupled Stokes and Darcy flows, J. Comput. Phys., 228 (2009), pp. 158-179.
    • (2009) J. Comput. Phys , vol.228 , pp. 158-179
    • Tlupova, S.1    Cortez, R.2
  • 32
    • 0000714458 scopus 로고
    • Stability and instability in the computation of flows with moving immersed boundaries: A comparison of three methods
    • C. TU AND C. PESKIN, Stability and instability in the computation of flows with moving immersed boundaries: A comparison of three methods, SIAM J. Sci. Statist. Comput., 13 (1992), pp. 1361-1376.
    • (1992) SIAM J. Sci. Statist. Comput , vol.13 , pp. 1361-1376
    • Tu, C.1    Peskin, C.2
  • 33
    • 3242694679 scopus 로고
    • A front-tracking method for viscous, incompressible, multi-fluid flows
    • S. O. UNVERDI AND G. TRYGGVASON, A front-tracking method for viscous, incompressible, multi-fluid flows, J. Comput. Phys., 100 (1992), pp. 25-37.
    • (1992) J. Comput. Phys , vol.100 , pp. 25-37
    • Unverdi, S.O.1    Tryggvason, G.2
  • 34
    • 0032901710 scopus 로고    scopus 로고
    • Self-polarization and directional motility of cytoplasm
    • DOI 10.1016/S0960-9822(99)80042-6
    • A. VERKHOVSKY, T. SVITKINA, AND G. BORISY, Self-polarization and directional motility of cytoplasm, Curr. Biol., 9 (1999), pp. 11-20. (Pubitemid 29045790)
    • (1999) Current Biology , vol.9 , Issue.1 , pp. 11-20
    • Verkhovsky, A.B.1    Svitkina, T.M.2    Borisy, G.G.3
  • 35
    • 77955267573 scopus 로고    scopus 로고
    • The moving boundary node method: A level set-based, finite volume algorithm with applications to cell motility
    • C. WOLGEMUTH AND M. ZAJAC, The moving boundary node method: A level set-based, finite volume algorithm with applications to cell motility, J. Comput. Phys., 229 (2010), pp. 7287-7308.
    • (2010) J. Comput. Phys , vol.229 , pp. 7287-7308
    • Wolgemuth, C.1    Zajac, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.