Evaluation of new biomarker genes for differentiating Haemophilus influenzae from Haemophilus haemolyticus

Journal of Clinical Microbiology

Volumn 50, Issue 4, 2012, Pages 1422-1424

  Theodore, M Jordan ^a   Anderson, Raydel D ^a   Wang, Xin ^a   Katz, Lee S ^c   Vuong, Jeni T ^a   Bell, Melissa E ^c   Juni, Billie A ^b   Lowther, Sara A ^a   Lynfield, Ruth ^b   MacNeil, Jessica R ^a   Mayer, Leonard W ^a  

^a CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^b MINNESOTA DEPARTMENT OF HEALTH   (United States)

^c NATIONAL CENTER FOR EMERGING AND ZOONOTIC INFECTIOUS DISEASES   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; FUCULOSE KINASE; PROTEIN D; RNA 16S; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GENE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CONTROLLED STUDY; FUCK GENE; GENOTYPE; HAEMOPHILUS; HAEMOPHILUS HAEMOLYTICUS; HAEMOPHILUS INFLUENZAE; HPD GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RNA SEQUENCE; SENSITIVITY AND SPECIFICITY; SPECIES DIFFERENTIATION;

BACTERIAL PROTEINS; CARRIER PROTEINS; GENETIC MARKERS; HAEMOPHILUS INFLUENZAE; IMMUNOGLOBULIN D; LIPOPROTEINS; MOLECULAR TYPING; PHOSPHOTRANSFERASES (ALCOHOL GROUP ACCEPTOR); PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S;

HAEMOPHILUS HAEMOLYTICUS; HAEMOPHILUS INFLUENZAE;

EID: 84863338408     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.06702-11     Document Type: Article

References (28)

1. Abdeldaim GM, et al. 2009. Detection of Haemophilus influenzae in respiratory secretions from pneumonia patients by quantitative real-time polymerase chain reaction. Diagn. Microbiol. Infect. Dis. 64:366-373.
2. Brenner DJ. 1973. Deoxyribonucleic acid reassociation in the taxonomy of enteric bacteria. Int. J. Syst. Bacteriol. 23:298-307.
3. Brenner DJ, Martin MA, Hoyer BH. 1967. Deoxyribonucleic acid homologies among some bacteria. J. Bacteriol. 94:486-487.
4. Brenner DJ, McWhorter AC, Knutson JK, Steigerwalt AG. 1982. Escherichia vulneris: a new species of Enterobacteriaceae associated with human wounds. J. Clin. Microbiol. 15:1133-1140. (Pubitemid 12070866)
5. Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797. (Pubitemid 38832724)
6. Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
7. Foxwell AR, Kyd JM, Cripps AW. 1998. Nontypeable Haemophilus influenzae: pathogenesis and prevention. Microbiol. Mol. Biol. Rev. 62:294-308. (Pubitemid 28270276)
8. Janda JM, Abbott SL. 2007. 16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfalls. J. Clin. Microbiol. 45:2761-2764. (Pubitemid 47417311)
9. Kilian M. 1991. Haemophilus, p 463-470. In Balows A, Herrmann KL, Isenberg HD, Shadomy JJ (ed), Manual of clinical microbiology. American Society for Microbiology, Washington, DC.
10. Kilian M. 1976. A taxonomic study of the genus Haemophilus, with the proposal of a new species. J. Gen. Microbiol. 93:9-62.
11. Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120. (Pubitemid 11166431)
12. Lowther SA, et al. 2012. Haemophilus influenzae type b infection, vaccination, and H. influenzae carriage in children in Minnesota, 2008-2009. Epidemiol. Infect. 140:566-574.
13. McCrea KW, et al. 2008. Relationships of nontypeable Haemophilus influenzae strains to hemolytic and nonhemolytic Haemophilus haemolyticus strains. J. Clin. Microbiol. 46:406-416. (Pubitemid 351231279)
14. Morey RE, et al. 2006. Species-specific identification of Leptospiraceae by 16S rRNA gene sequencing. J. Clin. Microbiol. 44:3510-3516. (Pubitemid 46768776)
15. Mukundan D, Ecevit Z, Patel M, Marrs CF, Gilsdorf JR. 2007. Pharyngeal colonization dynamics of Haemophilus influenzae and Haemophilus haemolyticus in healthy adult carriers. J. Clin. Microbiol. 45:3207-3217. (Pubitemid 47585641)
16. Murphy TF, et al. 2007. Haemophilus haemolyticus: a human respiratory tract commensal to be distinguished from Haemophilus influenzae. J. Infect. Dis. 195:81-89. (Pubitemid 44958229)
17. Nørskov-Lauritsen N. 2009. Detection of cryptic genospecies misidentified as Haemophilus influenzae in routine clinical samples by assessment of marker genes fucK, hap, and sodC. J. Clin. Microbiol. 47:2590-2592.
18. Nørskov-Lauritsen N, Overballe MD, Kilian M. 2009. Delineation of the species Haemophilus influenzae by phenotype, multilocus sequence phylogeny, and detection of marker genes. J. Bacteriol. 191:822-831.
19. Quentin R, Martin C, Musser JM, Pasquier-Picard N, Goudeau A. 1993. Genetic characterization of a cryptic genospecies of Haemophilus causing urogenital and neonatal infections. J. Clin. Microbiol. 31:1111-1116. (Pubitemid 23129429)
20. Quentin R, Ruimy R, Rosenau A, Musser JM, Christen R. 1996. Genetic identification of cryptic genospecies of Haemophilus causing urogenital and neonatal infections by PCR using specific primers targeting genes coding for 16S rRNA. J. Clin. Microbiol. 34:1380-1385. (Pubitemid 26163344)
21. Ridderberg W, Fenger MG, Norskov-Lauritsen N. 2010. Haemophilus influenzae may be untypable by the multilocus sequence typing scheme due to a complete deletion of the fucose operon. J. Med. Microbiol. 59:740-742.
22. Sacchi CT, et al. 2005. High level of sequence diversity in the 16S rRNA genes of Haemophilus influenzae isolates is useful for molecular subtyping. J. Clin. Microbiol. 43:3734-3742. (Pubitemid 41129653)
23. Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
24. Sandstedt SA, et al. 2008. Comparison of laboratory-based and phylogenetic methods to distinguish between Haemophilus influenzae and H. haemolyticus. J. Microbiol. Methods 75:369-371.
25. St Geme JW, III. 1993. Nontypeable Haemophilus influenzae disease: epidemiology, pathogenesis, and prospects for prevention. Infect. Agents Dis. 2:1-16.
26. Swords WE, Jones PA, Apicella MA. 2003. The lipo-oligosaccharides of Haemophilus influenzae: an interesting array of characters. J. Endotoxin Res. 9:131-144. (Pubitemid 36722593)
27. Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599. (Pubitemid 47236692)
28. Wang X, et al. 2011. Detection of bacterial pathogens in Mongolia meningitis surveillance with a new real-time PCR assay to detect Haemophilus influenzae. Int. J. Med. Microbiol. 301:303-309.