Application of deoxyribonucleic acid barcoding in Lauraceae plants

Pharmacognosy Magazine

Volumn 8, Issue 29, 2012, Pages 4-11

  Liu, Zhen ^a,b   Chen, Shi Lin ^c   Song, Jing Yuan ^c   Zhang, Shou Jun ^d   Chen, Ke Li ^b  

^a 309TH HOSPITAL OF PLA   (China)

^b HUBEI UNIVERSITY OF CHINESE MEDICINE   (China)

^c INSTITUTE OF MEDICINAL PLANT DEVELOPMENT   (China)

^d Wuhan Institute of Botany Chinese Academy of Sciences   (China)

Author keywords

Deoxyribonucleic acid barcoding; ITS2; Lauraceae; matK; psbA trnH; rbcL

Indexed keywords

PLANT DNA; PROTEIN MATK; PROTEIN PSBA TRNH; PROTEIN RBCL; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

ARTICLE; DNA BARCODING; DNA SEQUENCE; GENBANK; GENUS; INTERSPECIFIC VARIATION; INTRASPECIFIC VARIATION; LAURACEAE; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GENE; POLYMERASE CHAIN REACTION; SPECIES DIFFERENTIATION; UNINDEXED SEQUENCE;

EID: 84863298118     PISSN: 09731296     EISSN: 09764062     Source Type: Journal    
DOI: 10.4103/0973-1296.93301     Document Type: Article

References (27)

1. Drinnan AN, Crane PR, Friis EM, Pedersen KR. Lauraceous Flowers from the Potomac Group (Mid-Cretaceous) of Eastern North America. Bot Gaz 1990;151:370-84.
2. Hebert PD, Ratnasingham S, de Waard JR. Barcoding animal life: Cytochrome c oxidase subunit 1 divergences among closely related species. Proc Biol Sci 2003;270 Suppl 1:S96-9. (Pubitemid 36960325)
3. CBOL Plant Working Group. A DNA barcode for land plants. Proc Natl Acad Sci USA 2009;106:12794-7.
4. Chen SL, Yao H, Han JP, Liu C, Song JY, Shi LC, et al. Validation of the its2 region as a novel DNA barcode for identifying medicinal plant species. Plos One 2010;5:e8613.
5. Gao T, Chen SL. Authentication of the medicinal plants in Fabaceae by DNA barcoding technique. Planta Med 2009;75:417.
6. Pang XH, Chen SL. Using DNA barcodes to identify Rosaceae. Planta Med 2009;75:417.
7. Song JY, Yao H, Li Y, Li XW, Liu C, Han JP, et al. Authentication of the family polygonaceae in chinese pharmacopoeia by DNA barcoding technique. J Ethnopharmacol 2009;124:434-9.
8. Yao H, Song JY, Ma XY, Liu C, Li Y, Xu HX, et al. Identification of dendrobium species by a candidate DNA barcode sequence: the chloroplast psba-trnh intergenic region. Planta Med 2009;75:667-9.
9. Zhu YJ, Chen SL, Yao H, Tan R, Song JY, Luo K, et al. DNA barcoding for the identification plants of the genus Paris. Yao Xue Xue Bao 2010;45:376-82.
10. Meyer CP, Paulay G. DNA barcoding: error rates based on comprehensive sampling. PLoS Biol 2005;3:2229-38.
11. Meier R, Zhang GY, Ali F. The use of mean instead of smallest interspecific distances exaggerates the size of the "barcoding gap" and leads to misidentification. Syst Biol 2008;57:809-13.
12. Kress WJ, Erickson DL. A two-locus global DNA barcode for land plants: The coding rbcL gene complements the non-coding trnH-psbA spacer region. PLoS One 2007;2:e508.
13. Lahaye R, van der Bank M, Bogarin D, Warner J, Pupulin F, Gigot G, et al. DNA barcoding the floras of biodiversity hotspots. Proc Natl Acad Sci USA 2008;105:2923-8. (Pubitemid 351723645)
14. Slabbinck B, Dawyndt P, Martens M, De Vos P, De Baets B. Taxongap: A visualization tool for intra-and inter-species variation among individual biomarkers. Bioinformatics 2008;24:866-7. (Pubitemid 351386928)
15. Ross HA, Murugan S, Li WL. Testing the reliability of genetic methods of species identification via simulation. Syst Biol 2008;57:216-30. (Pubitemid 351502942)
16. Moritz C, Cicero C. DNA Barcoding: Promise and Pitfalls. PLoS Biol 2004;2:e354.
17. Fazekas AJ, Burgess KS, Kesanakurti PR, Graham SW, Newmaster SG, Husband BC, et al. Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well. PLoS One 2008;3:e2802.
18. Newmaster SG, Fazekas AJ, Steeves RA, Janovec J. Testing candidate plant barcode regions in the myristicaceae. Mol Ecol Resour 2008;8:480-90. (Pubitemid 351703576)
19. Rohwer JG. Toward a phylogenetic classification of the Lauraceae: Evidence from matK sequences. Syst Bot 2000;25:60-71. (Pubitemid 30152835)
20. Schultz J, Maisel S, Gerlach D, Müller T, Wolf M. A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the eukaryota. RNA 2005;11:361-4. (Pubitemid 40397169)
21. Miao M, Warren A, Song WB, Wang S, Shang HM, Chen ZG. Analysis of the internal transcribed spacer 2 (ITS2) region of scuticociliates and related taxa (Ciliophora, Oligohymenophorea) to infer their evolution and phylogeny. Protist 2008;159:519-33.
22. Li J, Li XW. Advances in lauraceae systematic research on the world scale. Acta Bot Yunnan 2004;26:1-11.
23. Kojoma M, Kurihara K, Yamada K, Sekita S, Satake M, Iida O. Genetic identification of cinnamon (Cinnamomum spp.) based on the trnL-trnF chloroplast DNA. Planta Med 2002;68:94-6. (Pubitemid 34113604)
24. Van der Werff H. A synopsis of Persea (Lauraceae) in Central America. Novon St. Louis Mo. 2002;12:575-86.
25. Van der Werff H. A synopsis of Ocotea (Lauraceae) in Central America and Southern Mexico. Ann Mo Bot Gard 2002;89:429-51.
26. Li J, Christophel DC, Conran JG, Li HW. Phylogenetic relationships within the 'core' Laureae (Litseacomplex, Lauraceae) inferred from sequences of the chloroplast gene matK and nuclear ribosomal DNA ITS regions. Plant Syst Evol 2004;246:19-34. (Pubitemid 38831271)
27. Wei FN, Tang SC. On the circumscription of Machilus and of Persea (Lauraceae). Acta Phytotaxon Sin 2006;44:437-42.