Differential global gene expression changes in response to low nitrogen stress in two maize inbred lines with contrasting low nitrogen tolerance

Genes and Genomics

Volumn 33, Issue 5, 2011, Pages 491-497

  Chen, Rongjun ^a   Tian, Mengliang ^a   Wu, Xun ^a   Huang, Yubi ^a  

^a SICHUAN AGRICULTURAL UNIVERSITY   (China)

Author keywords

Global gene expression; Low nitrogen stress; Maize Genome Array; Quantitative Real time PCR

Indexed keywords

EID: 84863292766     PISSN: 19769571     EISSN: 20929293     Source Type: Journal    
DOI: 10.1007/s13258-010-0163-x     Document Type: Article

References (31)

1. Agrama HAS, Zakaria AG, Said FB and Tuinstra M (1999) Identification of quantitative trait loci for nitrogen use efficiency in maize. Mol. Breed. 5: 187-195
2. Beman JM, Arrigo K and Matson PM (2005) Agricultural runoff fuels large phytoplankton blooms in vulnerable areas of the ocean. Nature 434: 211-214.
3. Benjamini Y and Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach for multiple testing. J. R. Statist. Soc B 57:289-300
4. Bertin P and Gallais A (2001) Physiological and genetic basis of nitrogen use efficiency in maize. II. QTL detection and coincidences. Maydica 46: 53-68.
5. Cao MJ, Ying Y and Ling ZC (2000) Corn Screening and Evaluation of Stress-resistant to low nitrogen. J. Maize Sci. 4: 64-49
6. Frink CR and Waggoner PE (1999) Nitrogen fertilizer: Retrospect and prospect. Proc. Natl. Acad. Sci. USA 96: 1175-1180
7. Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U and Speed TP (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4:249-64.
8. Le Gouis J, Béghin D, Heumez E and Pluchard P (2000) Genetic differences for nitrogen uptake and nitrogen utilization efficien-cies in winter wheat. Eur. J. Agron. 12:163-173.
9. Li Y, Du J, Wang TY, Shi Y, Song Y and Jia J (2002) Genetic diversity and relationships among Chinese maize inbred lines revealed by SSR markers. Maydica 47: 93-101
10. London JG (2005) Nitrogen study fertilizes fears of pollution. Nature 433: 791.
11. Lian XM, Xing YZ, Yan H, Xu CG, Li XH and Zhang QF (2005) QTLs for low nitrogen tolerance at seedling stage identified using a recombinant inbred line population derived from an elite rice hybrid. Theor. Appl. Genet. 112: 85-96
12. Laperche A, Brancourt-Hulmel M, Heumez E, Gardet O, Hanocq E, Devienne-Barret F and Gouis JL (2007) Using genotype×nitro-gen interaction variables to evaluate the QTL involved in wheat tolerance to nitrogen constraints. Theor. Appl. Genet. 115:399-415
13. Lian X, Wang S, Zhang J, Feng Q, Zhang L, Fan D, Li X, Yuan D, Han B and Zhang Q (2006) Expression profiles of 10,422 genes at early stage of low nitrogen stress in rice assayed using a cDNA microarray. Plant Mol. Biol. 60:617-631
14. Matsumura T, Sakakibara H, Nakano R, Kimata Y, Sugiyama T and Hase T (1997) A nitrate-inducible ferredoxin in maize roots-Genomic organization and differential expression of two nonphotosynthetic ferredoxin isoproteins. Plant Physiol. 114: 653-660.
15. Olivier L, Chaillou S, Merigout P, Talbotec J, and Daniel-Vedele F (2003) Quantitative Trait Loci Analysis of Nitrogen Use Efficiency in Arabidopsis. Plant Physiol. 131: 345-358
16. Pan XM, Tan J and Yang JY (2002) Study on Yield Combining Ability and Genetic Relationship Between Exotic Tropical， Subtropical Maize Inbreds and Domestic Temperate Inbreeds. Sci. Agr. Sinica 35:743-749
17. Peng MS, Bi YM, Zhu T and Rothstein SJ (2007) Genome-wide analysis of Arabidopsis responsive transcriptome to nitrogen limi-tation and its regulation by the ubiquitin ligase gene NLA. Plant Mol. Biol. 65: 775-797
18. Price J, Laxmi A, St Martin SK and Jang JC (2004) Global tran-scription profiling reveals multiple sugar signal transduction mechanisms in Arabidopsis. Plant Cell 16:2128-2150.
19. Rensink WA, Buell CR (2005) Microarray expression profiling re-sources for plant genomics. Trends Plant Sci. 10: 603-609
20. Ramos C (1995) Effect of agricultural practices on the nitrogen losses to the environment. Fertilizer Research 43:183-189
21. Ruuska SA, Lewis DC, Kennedy G, Furbank RT, Jenkins and Tabe LM (2007) Large scale transcriptome analysis of the effects of nitrogen nutrition on accumulation of stem carbohydrate reserves in reprodcutive stage wheat. Plant Mol. Biol. 66: 15-32
22. Stulen I, Perez-Soba M, De Kok LJ and Van Der Eerden L (1998) Impact of gaseous nitrogen deposition on plant functioning. New Phytol. 139:61-70.
23. Sakakibara H., Takei K., and Sugiyama T (1996) Isolation and characterization of a cDNA that encodes maize uroporphyrinogen III methyltransferase, an enzyme involved in the synthesis of siro-heme,which is a prosthetic group of nitrite reductase. Plant J. 10:883-892.
24. Scheible W.R., Lauerer M., Schulze E.D., Caboche M., and Stitt M (1997) Accumulation of nitrate in the shoot acts as a signal to regulate shoot-root allocation in tobacco. Plant J. 11: 671-691.
25. Scheible WR, Morcuende R, Czechowski T, Fritz C, Osuna D, Palacios-Rojas N, Schindelasch D, Thimm O, Udvardi MK and Stitt M (2004) Genome-wide reprogramming of primary and sec-ondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. Plant Physiol. 136: 2483-2499.
26. Stitt M (1999) Nitrate regulation of metabolism and growth. Curr. Opin. Plant Biol. 2:178-186
27. Wang R, Guegler K, LaBrie ST and Crawford NM (2000) Genomic analysis of a nutrient response in Arabidopsis reveals diverse expression patterns and novel metabolic and potential regulatory genes that are induced by nitrate. Plant Cell 12:1491-1510
28. Wang YH, Garvin DF and Kochian LV (2001) Nitrate-induced genes in tomato roots. Array analysis reveals novel genes that may play a role in nitrogen nutrition. Plant Physiol. 127: 345-359
29. Wang RC, Mamoru Okamoto, Xing XJ and Nigel M. Crawford (2003) Microarray Analysis of the Nitrate Response in Arabidopsis Roots and Shoots Reveals over 1,000 Rapidly Responding Genes and New Linkages to Glucose, Trehalose-6-Phosphate, Iron, and Sulfate Metabolism. Plant Physiol. 132: 556-567
30. Xie CX, Zhang SH, Li MS, Li XH, Hao ZF, Bai L, Zhang DG amd Liang YH (2007) Inferring Genome Ancestry and Estimating Molecular Relatedness Among 187 Chinese Maize Inbred Lines. J. Genet. Genomics 34:738-748
31. Yan XL, Wu P, Ling HQ, Xu GH, Xu FS and Zhang QF (2006) Plant Nutriomics in China: An Overview. Ann. Bot. 98:473-48