Structural variation of the superintegron in the toxigenic vibrio cholerae o1 El Tor

Biomedical and Environmental Sciences

Volumn 24, Issue 6, 2011, Pages 579-592

  Gao, Yan ^a   Pang, Bo ^a   Wang, Hai Yin ^a   Zhou, Hai Jian ^a   Cui, Zhi Gang ^a   Kan, Biao ^a  

^a CHINESE CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

Author keywords

Cassette; Superintegron; Vibrio cholerae

Indexed keywords

BACTERIAL DNA;

ARTICLE; BACTERIAL CHROMOSOME; CHOLERA; CLASSIFICATION; CLUSTER ANALYSIS; GENE DELETION; GENE EXPRESSION REGULATION; GENE FLOW; GENETIC VARIABILITY; GENETICS; HUMAN; INTEGRON; ISOLATION AND PURIFICATION; MICROBIOLOGY; OPEN READING FRAME; POLYMERASE CHAIN REACTION; PULSED FIELD GEL ELECTROPHORESIS; TANDEM REPEAT; ULTRASTRUCTURE; VIBRIO CHOLERAE;

CHOLERA; CHROMOSOMES, BACTERIAL; CLUSTER ANALYSIS; DNA, BACTERIAL; ELECTROPHORESIS, GEL, PULSED-FIELD; GENE DELETION; GENE FLOW; GENETIC VARIATION; HUMANS; INTEGRONS; MUTAGENESIS, INSERTIONAL; OPEN READING FRAMES; POLYMERASE CHAIN REACTION; TANDEM REPEAT SEQUENCES; VIBRIO CHOLERAE O1;

VIBRIO CHOLERAE; VIBRIO MIMICUS;

EID: 84863283142     PISSN: 08953988     EISSN: None     Source Type: Journal    
DOI: 10.3967/0895-3988.2011.06.001     Document Type: Article

References (33)

1. E Martinez, F de la Cruz Genetic elements involved in Tn21 site-specific integration, a novel mechanism for the dissemination of antibiotic resistance genes The EMBO journal 9 1990 1275 1281
2. HW Stokes, RM Hall A novel family of potentially mobile DNA elements encoding site-specific gene-integration functions: integrons Mol Microbiol 3 1989 1669 1683 (Pubitemid 20023246)
3. RM Hall, CM Collis Mobile gene cassettes and integrons: capture and spread of genes by site-specific recombination Mol Microbiol 15 1995 593 600
4. L Sundstrom The potential of integrons and connected programmed rearrangements for mediating horizontal gene transfer APMIS Suppl 84 1998 37 42 (Pubitemid 28531438)
5. D Mazel, B Dychinco, VA Webb et al. A distinctive class of integron in the Vibrio cholerae genome Science 280 1998 605 608 (Pubitemid 28227767)
6. A Barker, CA Clark, PA Manning Identification of VCR, a repeated sequence associated with a locus encoding a hemagglutinin in Vibrio cholerae O1 J Bacteriol 176 1994 5450 5458 (Pubitemid 24273535)
7. A Dean Rowe-Magnus MZ, and Didier Mazel. The adaptive genetic arsental of pathogenic Vibrio species: the role of integrons 2006 ASM Press Washington, DC 95 111
8. CY Chen, KM Wu, YC Chang et al. Comparative genome analysis of Vibrio vulnificus, a marine pathogen Genome Res 13 2003 2577 2587
9. D Mazel Integrons: agents of bacterial evolution Nat Rev Microbiol 4 8 2006 608 620 (Pubitemid 44317023)
10. DA Rowe-Magnus, AM Guerout, D Mazel Super-integrons Res Microbiol 150 1999 641 651 (Pubitemid 30035885)
11. A Ogawa, T Takeda The gene encoding the heat-stable enterotoxin of Vibrio cholerae is flanked by 123-base pair direct repeats Microbiol Immunol 37 1993 607 616 (Pubitemid 23288957)
12. VL Franzon, A Barker, PA Manning Nucleotide sequence encoding the mannose-fucose-resistant hemagglutinin of Vibrio cholerae O1 and construction of a mutant Infect Immun 61 1993 3032 3037 (Pubitemid 23182304)
13. JB Kaper, JG Morris Jr, MM Levine Cholera Clin Microbiol Rev 8 1995 48 86
14. T Ramamurthy, S Garg, R Sharma et al. Emergence of novel strain of Vibrio cholerae with epidemic potential in southern and eastern India Lancet 341 1993 703 704 (Pubitemid 23083297)
15. JF Heidelberg, JA Eisen, WC Nelson et al. DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae Nature 406 2000 477 483 (Pubitemid 30625724)
16. B Pang, M Yan, Z Cui et al. Genetic diversity of toxigenic and nontoxigenic Vibrio cholerae serogroups O1 and O139 revealed by array-based comparative genomic hybridization J Bacteriol 189 2007 4837 4849 (Pubitemid 47025596)
17. B Pang, X Zheng, B Diao et al. Whole genome PCR Scanning reveals the syntenic genome structure of toxigenic Vibrio cholera strains in the O1/O139 population PLoS ONE 6 2011 e24267
18. L Feng, PR Reeves, R Lan et al. A recalibrated molecular clock and independent origins for the cholera pandemic clones PLoS ONE 3 2008 e4053
19. NC Castaneda, M Pichel, B Orman et al. Genetic characterization of Vibrio cholerae isolates from Argentina by V. cholerae repeated sequences-polymerase chain reaction Diagn Microbiol Infect Dis 53 2005 175 183 (Pubitemid 41607621)
20. M Labbate, Y Boucher, MJ Joss et al. Use of chromosomal integron arrays as a phylogenetic typing system for Vibrio cholerae pandemic strains Microbiology 153 2007 1488 1498 (Pubitemid 46780005)
21. CA Clark, L Purins, P Kaewrakon et al. The Vibrio cholerae O1 chromosomal integron Microbiology 146 2000 2605 2612
22. Y Danin-Poleg, LA Cohen, H Gancz et al. Vibrio cholerae strain typing and phylogeny study based on simple sequence repeats J Clin Microbiol 45 2007 736 746 (Pubitemid 46427686)
23. KL Cooper, CK Luey, M Bird et al. Development and validation of a PulseNet standardized pulsed-field gel electrophoresis protocol for subtyping of Vibrio cholerae Foodborne Pathog Dis 3 2006 51 58
24. LR Dice Measures of the amount of ecological association between species Ecology 26 1945 6
25. CM Collis, GD Recchia, MJ Kim et al. Efficiency of recombination reactions catalyzed by class 1 integron integrase IntI1 J Bacteriol 183 2001 2535 2542 (Pubitemid 32249762)
26. K Hansson, L Sundstrom, A Pelletier et al. IntI2 integron integrase in Tn7 J Bacteriol 184 2002 1712 1721 (Pubitemid 34188223)
27. G Leon, PH Roy Excision and integration of cassettes by an integron integrase of Nitrosomonas europaea J Bacteriol 185 2003 2036 2041 (Pubitemid 36297907)
28. DA Rowe-Magnus, AM Guerout, L Biskri et al. Comparative analysis of superintegrons: engineering extensive genetic diversity in the Vibrionaceae Genome Res 13 2003 428 442 (Pubitemid 36395401)
29. D MacDonald, G Demarre, M Bouvier et al. Structural basis for broad DNA-specificity in integron recombination Nature 440 2006 1157 1162
30. AJ Holmes, MR Gillings, BS Nield et al. The gene cassette metagenome is a basic resource for bacterial genome evolution Environ Microbiol 5 2003 383 394 (Pubitemid 36572800)
31. DA Rowe-Magnus, AM Guerout, P Ploncard et al. The evolutionary history of chromosomal super-integrons provides an ancestry for multiresistant integrons Proc Natl Acad Sci USA 98 2001 652 657 (Pubitemid 32105098)
32. J Chun, CJ Grim, NA Hasan et al. Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae Proc Natl Acad Sci USA 106 2009 15442 15447
33. attention: Supplemental Table and Supplemental Figure S1, S2, and S3 can be found in the whole text on www.besjournal.com, 2011; 24(6).