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Volumn 5, Issue 5, 2003, Pages 383-394

The gene cassette metagenome is a basic resource for bacterial genome evolution

Author keywords

[No Author keywords available]

Indexed keywords

BASE SEQUENCE; EVOLUTION, MOLECULAR; GENES, BACTERIAL; GENOME, BACTERIAL; INTEGRONS; MOLECULAR SEQUENCE DATA; RECOMBINATION, GENETIC; SEQUENCE ALIGNMENT; SOIL MICROBIOLOGY;

EID: 0037737997     PISSN: 14622912     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1462-2920.2003.00429.x     Document Type: Article
Times cited : (131)

References (27)
  • 1
    • 0024081635 scopus 로고
    • Physical and genetic map of the IncW plasmid R388
    • Avila, P., and de la Cruz, F. (1988) Physical and genetic map of the IncW plasmid R388. Plasmid 20: 155-157.
    • (1988) Plasmid , vol.20 , pp. 155-157
    • Avila, P.1    De La Cruz, F.2
  • 2
    • 0017807890 scopus 로고
    • Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the p15A cryptic miniplasmid
    • Chang, A.C.Y., and Cohen, S.N. (1978) Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the p15A cryptic miniplasmid. J Bacteriol 134: 1141-1156.
    • (1978) J Bacteriol , vol.134 , pp. 1141-1156
    • Chang, A.C.Y.1    Cohen, S.N.2
  • 4
    • 0026761976 scopus 로고
    • Gene cassettes from the insert region of integrons are excised as covalently closed circles
    • Collis, C.M., and Hall, R.M. (1992) Gene cassettes from the insert region of integrons are excised as covalently closed circles. Mol Microbiol 6: 2875-2885.
    • (1992) Mol Microbiol , vol.6 , pp. 2875-2885
    • Collis, C.M.1    Hall, R.M.2
  • 5
    • 0028835869 scopus 로고
    • Expression of antibiotic resistance genes in the integrated cassettes of integrons
    • Collis, C.M., and Hall, R.M. (1995) Expression of antibiotic resistance genes in the integrated cassettes of integrons. Antimicrob Agents Chemother 39: 155-162.
    • (1995) Antimicrob Agents Chemother , vol.39 , pp. 155-162
    • Collis, C.M.1    Hall, R.M.2
  • 7
    • 0031850574 scopus 로고    scopus 로고
    • Binding of the purified integron DNA integrase Intl1 to integron- and cassette-associated recombination sites
    • Collis, C.M., Kim, M.-J., Stokes, H.W., and Hall, R.M. (1998) Binding of the purified integron DNA integrase Intl1 to integron- and cassette-associated recombination sites. Mol Microbiol 29: 477-490.
    • (1998) Mol Microbiol , vol.29 , pp. 477-490
    • Collis, C.M.1    Kim, M.-J.2    Stokes, H.W.3    Hall, R.M.4
  • 8
    • 0035091147 scopus 로고    scopus 로고
    • Efficiency of recombination reactions catalysed by the Class 1 integron integrase Intl1
    • Collis, C.M., Recchia, G.D., Kim, M.-J., Stokes, H.W., and Hall, R.M. (2001) Efficiency of recombination reactions catalysed by the Class 1 integron integrase Intl1. J Bacteriol 183: 2535-2542.
    • (2001) J Bacteriol , vol.183 , pp. 2535-2542
    • Collis, C.M.1    Recchia, G.D.2    Kim, M.-J.3    Stokes, H.W.4    Hall, R.M.5
  • 9
    • 0036097235 scopus 로고    scopus 로고
    • Characterization of the class 3 integron and the site-specific recombination system it determines
    • Collis, C.M., Kim, M.-J., Partridge, S.R., Stokes, H.W., and Hall, R.M. (2002) Characterization of the class 3 integron and the site-specific recombination system it determines. J Bacteriol 184: 3017-3026.
    • (2002) J Bacteriol , vol.184 , pp. 3017-3026
    • Collis, C.M.1    Kim, M.-J.2    Partridge, S.R.3    Stokes, H.W.4    Hall, R.M.5
  • 10
    • 0019951650 scopus 로고
    • Genetic and molecular characterization of Tn21, a multiple resistance transposon from R100.1
    • de la Cruz, F. and Grinsted, J. (1982) Genetic and molecular characterization of Tn21, a multiple resistance transposon from R100.1. J Bacteriol 151: 222-228.
    • (1982) J Bacteriol , vol.151 , pp. 222-228
    • De La Cruz, F.1    Grinsted, J.2
  • 11
    • 0032589787 scopus 로고    scopus 로고
    • The integrase family of recombinase: Organization and function of the active site
    • Grainge, I., and Jayaram, M. (1999) The integrase family of recombinase: organization and function of the active site. Mol Microbiol 33: 449-456.
    • (1999) Mol Microbiol , vol.33 , pp. 449-456
    • Grainge, I.1    Jayaram, M.2
  • 12
    • 0025915621 scopus 로고
    • Site-specific insertion of genes into integrons: Role of the 59-base element and determination of the recombination cross-over point
    • Hall, R.M., Brookes, D.E., and Stokes, H.W. (1991) Site-specific insertion of genes into integrons: role of the 59-base element and determination of the recombination cross-over point. Mol Microbiol 5: 1941-1959.
    • (1991) Mol Microbiol , vol.5 , pp. 1941-1959
    • Hall, R.M.1    Brookes, D.E.2    Stokes, H.W.3
  • 15
    • 0037309129 scopus 로고    scopus 로고
    • A distinctive and functional integron/gene cassette system present in soil bacterial communities associated with genomic diversity in Pseudomonas stutzeri
    • Holmes, A.J., Holley, M.P., Mahon, A., Nield, B.S., Gillings, M.R., and Stokes, H.W. (2003) A distinctive and functional integron/gene cassette system present in soil bacterial communities associated with genomic diversity in Pseudomonas stutzeri. J Bacteriol 185: 918-928.
    • (2003) J Bacteriol , vol.185 , pp. 918-928
    • Holmes, A.J.1    Holley, M.P.2    Mahon, A.3    Nield, B.S.4    Gillings, M.R.5    Stokes, H.W.6
  • 16
    • 0034283229 scopus 로고    scopus 로고
    • Intraspecies variation in bacterial genomes: The need for a species genome concept
    • Lan, R., and Reeves, P.R. (2000) Intraspecies variation in bacterial genomes: the need for a species genome concept. Trends Microbiol 8: 396-401.
    • (2000) Trends Microbiol , vol.8 , pp. 396-401
    • Lan, R.1    Reeves, P.R.2
  • 17
    • 0025274957 scopus 로고
    • Genetic elements involved in Tn21 site-specific integration, a novel mechanism for the dissemination of antibiotic resistance genes
    • Martinez, E., and de la Cruz, F. (1990) Genetic elements involved in Tn21 site-specific integration, a novel mechanism for the dissemination of antibiotic resistance genes. EMBO J 9: 1275-1281.
    • (1990) EMBO J , vol.9 , pp. 1275-1281
    • Martinez, E.1    De La Cruz, F.2
  • 18
    • 0032562596 scopus 로고    scopus 로고
    • A distinctive class of integron in the Vibrio cholerae genome
    • Mazel, D., Dychinco, B., Webb, B., and Davies, J. (1998) A distinctive class of integron in the Vibrio cholerae genome. Science 280: 605-608.
    • (1998) Science , vol.280 , pp. 605-608
    • Mazel, D.1    Dychinco, B.2    Webb, B.3    Davies, J.4
  • 20
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman, H., Lawrence, J.G., and Groisman, E.A. (2000) Lateral gene transfer and the nature of bacterial innovation. Nature 405: 299-304.
    • (2000) Nature , vol.405 , pp. 299-304
    • Ochman, H.1    Lawrence, J.G.2    Groisman, E.A.3
  • 21
    • 0029567996 scopus 로고
    • Gene cassettes: A new class of mobile element
    • Recchia, G.D., and Hall, R.M. (1995) Gene cassettes: a new class of mobile element. Microbiology 141: 3015-3027.
    • (1995) Microbiology , vol.141 , pp. 3015-3027
    • Recchia, G.D.1    Hall, R.M.2
  • 22
    • 0035895252 scopus 로고    scopus 로고
    • The evolutionary history of chromosomal super-integrons provides an ancestry for multiresistant integrons
    • Rowe-Magnus, D.A., Guerot, A.M., Ploncard, P., Dychinco, B., Davies, J., and Mazel, D. (2001) The evolutionary history of chromosomal super-integrons provides an ancestry for multiresistant integrons. Proc Natl Acad Sci USA 98: 652-657.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 652-657
    • Rowe-Magnus, D.A.1    Guerot, A.M.2    Ploncard, P.3    Dychinco, B.4    Davies, J.5    Mazel, D.6
  • 23
    • 0037161811 scopus 로고    scopus 로고
    • Comparison of the genomes of two Xanthomonas pathogens with differing host specificities
    • da Silva, A.C.R., Ferro, J.A., Reinach, F.C., Farah, C.S., Furlan, L.R., Quaggio, R.B. et al. (2002) Comparison of the genomes of two Xanthomonas pathogens with differing host specificities. Nature 417: 459-463
    • (2002) Nature , vol.417 , pp. 459-463
    • Da Silva, A.C.R.1    Ferro, J.A.2    Reinach, F.C.3    Farah, C.S.4    Furlan, L.R.5    Quaggio, R.B.6
  • 24
    • 0024805974 scopus 로고
    • A novel family of potentially mobile DNA elements encoding site-specific gene integration functions: Integrons
    • Stokes, H.W., and Hall, R.M. (1989) A novel family of potentially mobile DNA elements encoding site-specific gene integration functions: integrons. Mol Microbiol 3: 1669-1683.
    • (1989) Mol Microbiol , vol.3 , pp. 1669-1683
    • Stokes, H.W.1    Hall, R.M.2
  • 25
    • 0030698334 scopus 로고    scopus 로고
    • Structure and function of 59-base element recombination sites associated with mobile gene cassettes
    • Stokes, H.W., O'Gorman, D.B., Recchia, G.D., Parsekhian, M., and Hall, R.M. (1997) Structure and function of 59-base element recombination sites associated with mobile gene cassettes. Mol Microbiol 26: 731-745.
    • (1997) Mol Microbiol , vol.26 , pp. 731-745
    • Stokes, H.W.1    O'Gorman, D.B.2    Recchia, G.D.3    Parsekhian, M.4    Hall, R.M.5
  • 27
    • 0035163930 scopus 로고    scopus 로고
    • Discovery and distribution of super-integrons among Pseudomonads
    • Vaisvila, R., Morgan, R.D., Posfai, J., and Raleigh, E.A. (2001) Discovery and distribution of super-integrons among Pseudomonads. Mol Microbiol 42: 587-601.
    • (2001) Mol Microbiol , vol.42 , pp. 587-601
    • Vaisvila, R.1    Morgan, R.D.2    Posfai, J.3    Raleigh, E.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.