Loktanella tamlensis sp. nov., isolated from seawater

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue PART 3, 2012, Pages 586-590

  Lee, Soon Dong ^a  

^a Jeju National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

CARDIOLIPIN; FATTY ACID; GENOMIC DNA; HYDROXY FATTY ACID; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; SEA WATER; UBIQUINONE;

ARTICLE; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIUM COLONY; BACTERIUM ISOLATION; DNA HYBRIDIZATION; GENE SEQUENCE; GENOTYPE; GENUS; GRAM NEGATIVE AEROBIC RODS AND COCCI; KOREA; LOKTANELLA TAMLENSIS; MICROBIAL MORPHOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; TEMPERATURE;

AEROBIOSIS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; HYDROGEN-ION CONCENTRATION; LOCOMOTION; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHOSPHOLIPIDS; PHYLOGENY; REPUBLIC OF KOREA; RHODOBACTERACEAE; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; TEMPERATURE; UBIQUINONE;

BACTERIA (MICROORGANISMS); LOKTANELLA; LOKTANELLA ROSEA; MARICOLA;

EID: 84863266850     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.029462-0     Document Type: Article

References (21)

1. Brosius, J., Palmer, M. L., Kennedy, P. J. & Noller, H. F. (1978). Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci U S A 75, 4801-4805
2. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229
3. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376
4. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791
5. Fitch, W. M. (1971). Towards defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416
6. Hosoya, S. & Yokota, A. (2007). Loktanella atrilutea sp. nov., isolated from seawater in Japan. Int J Syst Evol Microbiol 57, 1966-1969
7. Ivanova, E. P., Zhukova, N. V., Lysenko, A. M., Gorshkova, N. M., Sergeev, A. F., Mikhailov, V. V. & Bowman, J. P. (2005). Loktanella agnita sp. nov. and Loktanella rosea sp. nov., from the north-west Pacific Ocean. Int J Syst Evol Microbiol 55, 2203-2207
8. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132 Edited by H. N. Munro. New York: Academic Press.
9. Kroppenstedt, R. M. (1985). Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical Methods in Bacterial Systematics, pp. 173-199 Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
10. Lau, S. C. K., Tsoi, M. M. Y., Li, X., Plakhotnikova, I., Wu, M., Wong, P.-K. & Qian, P.-Y. (2004). Loktanella hongkongensis sp. nov., a novel member of the a-Proteobacteria originating from marine biofilms in Hong Kong waters. Int J Syst Evol Microbiol 54, 2281-2284
11. Lee, S. D. (2006). Kineococcus marinus sp. nov., isolated from marine sediment of the coast of Jeju, Korea. Int J Syst Evol Microbiol 56, 1279-1283
12. MacFaddin, J. F. (1980). Biochemical Tests for Identification of Medical Bacteria, 2nd edn. Baltimore: Williams & Wilkins.
13. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167
14. Minnikin, D. E., Patel, P. V., Alshamaony, L. & Goodfellow, M. (1977). Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27, 104-117
15. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241
16. Moon, Y. G., Seo, S. H., Lee, S. D. & Heo, M. S. (2010). Loktanella pyoseonensis sp. nov., isolated from beach sand, and emended description of the genus Loktanella. Int J Syst Evol Microbiol 60, 785-789
17. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
18. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882
19. Van Trappen, S., Mergaert, J. & Swings, J. (2004). Loktanella salsilacus gen. nov., sp. nov., Loktanella fryxellensis sp. nov. and Loktanella vestfoldensis sp. nov., new members of the Rhodobacter group, isolated from microbial mats in Antarctic lakes. Int J Syst Evol Microbiol 54, 1263-1269
20. Weon, H.-Y., Kim, B.-Y., Yoo, S.-H., Kim, J.-S., Kwon, S.-W., Go, S.-J. & Stackebrandt, E. (2006). Loktanella koreensis sp. nov., isolated from sea sand in Korea. Int J Syst Evol Microbiol 56, 2199-2202
21. Yoon, J.-H., Kang, S.-J., Lee, S.-Y. & Oh, T.-K. (2007). Loktanella maricola sp. nov., isolated from seawater of the East Sea in Korea. Int J Syst Evol Microbiol 57, 1799-1802.