The sub-cellular localization of Sulfolobus DNA replication

Nucleic Acids Research

Volumn 40, Issue 12, 2012, Pages 5487-5496

  Gristwood, Tamzin ^a   Duggin, Iain G ^a,c   Wagner, Michaela ^b   Albers, Sonja V ^b   Bell, Stephen D ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b MAX PLANCK INSTITUTE FOR TERRESTRIAL MICROBIOLOGY   (Germany)

^c UNIVERSITY OF TECHNOLOGY SYDNEY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOSIDE ANALOG;

ARTICLE; CELL CYCLE PROGRESSION; CELLULAR DISTRIBUTION; CHROMOSOME; CONTROLLED STUDY; DNA REPLICATION; FLOW CYTOMETRY; GENE AMPLIFICATION; GENE EXPRESSION; GENE LOCUS; HOMOLOGOUS RECOMBINATION; IMMUNOLOCALIZATION; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; REPLISOME; SOUTHERN BLOTTING; SULFOLOBUS ACIDOCALDARIUS; SULFOLOBUS SOLFATARICUS; WESTERN BLOTTING;

BROMODEOXYURIDINE; CELL CYCLE; DEOXYURIDINE; DNA REPLICATION; DNA, ARCHAEAL; DNA-DIRECTED DNA POLYMERASE; MULTIENZYME COMPLEXES; SULFOLOBUS ACIDOCALDARIUS; SULFOLOBUS SOLFATARICUS;

ARCHAEA; SULFOLOBUS; SULFOLOBUS ACIDOCALDARIUS; SULFOLOBUS SOLFATARICUS;

EID: 84863197411     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks217     Document Type: Article

References (38)

1. Duggin,I.G. and Bell,S.D. (2006) The chromosome replication machinery of the archaeon Sulfolobus solfataricus. J. Biol. Chem., 281, 15029-15032. (Pubitemid 43855089)
2. Edgell,D.R. and Doolittle,W.F. (1997) Archaea and the origin(s) of DNA replication proteins. Cell, 89, 995-998. (Pubitemid 127678731)
3. Robinson,N.P. and Bell,S.D. (2005) Origins of DNA replication in the three domains of life. FEBS J., 272, 3757-3766. (Pubitemid 41117210)
4. Robinson,N.P. and Bell,S.D. (2007) Extrachromosomal element capture and the evolution of multiple replication origins in archaeal chromosomes. Proc. Natl Acad. Sci. USA, 104, 5806-5811. (Pubitemid 47175615)
5. Robinson,N.P., Blood,K.A., McCallum,S.A., Edwards,P.A. and Bell,S.D. (2007) Sister chromatid junctions in the hyperthermophilic archaeon Sulfolobus solfataricus. EMBO J., 26, 816-824.
6. Robinson,N.P., Dionne,I., Lundgren,M., Marsh,V.L., Bernander,R. and Bell,S.D. (2004) Identification of two origins of replication in the single chromosome of the Archaeon Sulfolobus solfataricus. Cell, 116, 25-38. (Pubitemid 38156181)
7. Lundgren,M., Andersson,A., Chen,L., Nilsson,P. and Bernander,R. (2004) Three replication origins in Sulfolobus species: synchronous initiation of chromosome replication and asynchronous termination. Proc. Natl Acad. Sci. USA, 101, 7046-7051. (Pubitemid 38596440)
8. Duggin,I.G., McCallum,S.A. and Bell,S.D. (2008) Chromosome replication dynamics in the archaeon Sulfolobus acidocaldarius. Proc. Natl Acad. Sci. USA, 105, 16737-16742.
9. Bick,M.D. and Davidson,R.L. (1974) Total substitution of bromodeoxyuridine for thymidine in dna of a bromodeoxyuridine-dependent cell line. Proc. Natl Acad. Sci. USA, 71, 2082-2086.
10. Gratzner,H.G. (1982) Monoclonal-antibody to 5-bromodeoxyuridine and 5-iododeoxyuridine - a new reagent for detection of dna-replication. Science, 218, 474-475.
11. Salic,A. and Mitchison,T.J. (2008) A chemical method for fast and sensitive detection of DNA synthesis in vivo. Proc. Natl Acad. Sci. USA, 105, 2415-2420. (Pubitemid 351520528)
12. Ellen,A.F., Rohulya,O.V., Fusetti,F., Wagner,M., Albers,S.V. and Driessen,A.J.M. (2011) The sulfolobicin genes of Sulfolobus acidocaldarius encode novel antimicrobial proteins. J. Bacteriol., 193, 4380-4387.
13. Albers,S.-V. and Driessen,A.J.M. (2008) Conditions for gene disruption by homologous recombination of exogenous DNA into the Sulfolobus solfataricus genome. Archaea, 2, 145-149.
14. Berkner,S., Grogan,D., Albers,S.-V. and Lipps,G. (2007) Small multicopy, non-integrative shuttle vectors based on the plasmid pRN1 for Sulfolobus acidocaldarius and Sulfolobus solfataricus, model organisms of the (cren-)archaea. Nucleic Acids Res., 35, e88.
15. Szabó,Z., Sani,M., Groeneveld,M., Zolghadr,B., Schelert,J., Albers,S.V., Blum,P., Boekema,E.J. and Driessen,A.J.M. (2007) Flagellar motility and structure in the hyperthermoacidophilic archaeon Sulfolobus solfataricus. J. Bacteriol., 189, 4305-4309. (Pubitemid 46847379)
16. Albers,S.V., Jonuscheit,M., Dinkelaker,S., Urich,T., Kletzin,A., Tampé,R., Driessen,A.J. and Schleper,C. (2006) Production of recombinant and tagged proteins in the hyperthermophilic archaeon Sulfolobus solfataricus. Appl. Environ. Microb., 72, 102-111.
17. Samson,R.Y., Obita,T., Freund,S.M., Williams,R.L. and Bell,S.D. (2008) A role for the ESCRT system in cell division in Archaea. Science, 322, 1710-1713.
18. Duggin,I.G., Dubarry,N. and Bell,S.D. (2011) Replication termination and chromosome dimer resolution in the archaeon Sulfolobus solfataricus. EMBO J., 30, 145-153.
19. Hediger,F., Neumann,F.R., Van Houwe,G., Dubrana,K. and Gasser,S.M. (2002) Live imaging of telomeres: yKu and Sir proteins define redundant telomere-anchoring pathways in yeast. Curr. Biol., 12, 2076-2089. (Pubitemid 36021885)
20. Sivakumar,S., Porter-Goff,M., Patel,P.K., Benoit,K. and Rhind,N. (2004) In vivo labeling of fission yeast DNA with thymidine and thymidine analogs. Methods, 33, 213-219. (Pubitemid 38648842)
21. Hodson,J.A., Bailis,J.M. and Forsburg,S.L. (2003) Efficient labeling of fission yeast Schizosaccharomyces pombe with thymidine and BUdR. Nucleic Acids Res., 31, E134.
22. Lengronne,A., Pasero,P., Bensimon,A. and Schwob,E. (2001) Monitoring S phase progression globally and locally using BrdU incorporation in TK+ yeast strains. Nucleic Acids Res., 29, 1433-1442. (Pubitemid 32288489)
23. Fitz-Gibbon,S.T., Ladner,H., Kim,U.J., Stetter,K.O., Simon,M.I. and Miller,J.H. (2002) Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum. Proc. Natl Acad. Sci. USA, 99, 984-989. (Pubitemid 34106622)
24. Lubelska,J.M., Jonuscheit,M., Schleper,C., Albers,S.-V. and Driessen,A.J.M. (2006) Regulation of expression of the arabinose and glucose transporter genes in the thermophilic archaeon Sulfolobus solfataricus. Extremophiles, 10, 383-391. (Pubitemid 44564002)
25. Worthington,P., Hoang,V., Perez-Pomares,F. and Blum,P. (2003) Targeted disruption of the alpha-amylase gene in the hyperthermophilic archaeon Sulfolobus solfataficus. J. Bacteriol., 185, 482-488. (Pubitemid 36070474)
26. Dionne,I., Nookala,R.K., Jackson,S.P., Doherty,A.J. and Bell,S.D. (2003) A heterotrimeric PCNA in the hyperthermophilic archaeon Sulfolobus solfataricus. Mol. Cell, 11, 275-282. (Pubitemid 36126608)
27. Zhang,C., Guo,L., Deng,L., Wu,Y., Liang,Y., Huang,L. and She,Q. (2010) Revealing the essentiality of multiple archaeal pcna genes using a mutant propagation assay based on an improved knockout method. Microbiology (SGM), 156, 3386-3397.
28. Diermeier-Daucher,S., Clarke,S.T., Hill,D., Vollmann-Zwerenz,A., Bradford,J.A. and Brockhoff,G. (2009) Cell type specific applicability of 5-ethynyl-2′-deoxyuridine (EdU) for dynamic proliferation assessment in flow cytometry. Cytometry A, 75, 535-546.
29. Bates,D. (2008) The bacterial replisome: back on track? Mol. Microbiol., 69, 1341-1348.
30. Wang,X., Lesterlin,C., Reyes-Lamothe,R., Ball,G. and Sherratt,D.J. (2011) Replication and segregation of an Escherichia coli chromosome with two replication origins. Proc. Natl Acad. Sci. USA, 108, E243-E250.
31. Reyes-Lamothe,R., Possoz,C., Danilova,O. and Sherratt,D.J. (2008) Independent positioning and action of Escherichia coli replisomes in live cells. Cell, 133, 90-102. (Pubitemid 351442987)
32. Kitamura,E., Blow,J.J. and Tanaka,T.U. (2006) Live-cell imaging reveals replication of individual replicons in eukaryotic replication factories. Cell, 125, 1297-1308. (Pubitemid 43929088)
33. Ebrahimi,H., Robertson,E.D., Taddei,A., Gasser,S.M., Donaldson,A.D. and Hiraga,S.-i. (2010) Early initiation of a replication origin tethered at the nuclear periphery. J. Cell Sci., 123, 1015-1019.
34. Dereeper,A., Guignon,V., Blanc,G., Audic,S., Buffet,S., Chevenet,F., Dufayard,J.-F., Guindon,S., Lefort,V., Lescot,M. et al. (2008) Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acid Res., 36, W465-W469.
35. Sherratt,D.J. (2003) Bacterial chromosome dynamics. Science, 301, 780-785.
36. Bowman,G.R., Comolli,L.R., Zhu,J., Eckart,M., Koenig,M., Downing,K.H., Moerner,W.E., Earnest,T. and Shapiro,L. (2008) A polymeric protein anchors the chromosomal origin/ParB complex at a bacterial cell pole. Cell, 134, 945-955.
37. Reno,M.L., Held,N.L., Fields,C.J., Burke,P.V. and Whitaker,R.J. (2009) Biogeography of the pan-genome of Sulfolobus islandicus. Proc. Natl Acad. Sci. USA, 106, 8605-8610.
38. Mahadevan,P. and Seto,D. (2010) Rapid pair-wise synteny analysis of large bacterial genomes using web-based GeneOrder4.0. BMC Res., 3, 41.