메뉴 건너뛰기




Volumn 7, Issue 2, 2012, Pages

Genome-wide association study identified a narrow chromosome 1 region associated with chicken growth traits

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; MESSENGER RNA; MICRORNA; MICRORNA 15A; MICRORNA 16 1; UNCLASSIFIED DRUG;

EID: 84863164792     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0030910     Document Type: Article
Times cited : (100)

References (49)
  • 1
    • 0037350268 scopus 로고    scopus 로고
    • A global search reveals epistatic interaction between QTL for early growth in the chicken
    • Carlborg O, Kerje S, Schütz K, Jacobsson L, Jensen P, et al. (2003) A global search reveals epistatic interaction between QTL for early growth in the chicken. Genome Research 13: 413.
    • (2003) Genome Research , vol.13 , pp. 413
    • Carlborg, O.1    Kerje, S.2    Schütz, K.3    Jacobsson, L.4    Jensen, P.5
  • 2
    • 46249129496 scopus 로고    scopus 로고
    • Fine-mapping quantitative trait loci for body weight and abdominal fat traits: effects of marker density and sample size
    • Liu X, Zhang H, Li H, Li N, Zhang Y, et al. (2008) Fine-mapping quantitative trait loci for body weight and abdominal fat traits: effects of marker density and sample size. Poult Sci 87: 1314-1319.
    • (2008) Poult Sci , vol.87 , pp. 1314-1319
    • Liu, X.1    Zhang, H.2    Li, H.3    Li, N.4    Zhang, Y.5
  • 4
    • 77954569149 scopus 로고    scopus 로고
    • Mapping QTL for growth and shank traits in chickens divergently selected for high or low body weight
    • Ankra-Badu GA, Le Bihan-Duval E, Mignon-Grasteau S, Pitel F, Beaumont C, et al. (2010) Mapping QTL for growth and shank traits in chickens divergently selected for high or low body weight. Anim Genet 41: 400-405.
    • (2010) Anim Genet , vol.41 , pp. 400-405
    • Ankra-Badu, G.A.1    Le Bihan-Duval, E.2    Mignon-Grasteau, S.3    Pitel, F.4    Beaumont, C.5
  • 5
    • 0036984812 scopus 로고    scopus 로고
    • Mapping of quantitative trait loci for body weight at three, six, and nine weeks of age in a broiler layer cross
    • Sewalem A, Morrice DM, Law A, Windsor D, Haley CS, et al. (2002) Mapping of quantitative trait loci for body weight at three, six, and nine weeks of age in a broiler layer cross. Poult Sci 81: 1775-1781.
    • (2002) Poult Sci , vol.81 , pp. 1775-1781
    • Sewalem, A.1    Morrice, D.M.2    Law, A.3    Windsor, D.4    Haley, C.S.5
  • 6
    • 0041488856 scopus 로고    scopus 로고
    • The twofold difference in adult size between the red junglefowl and White Leghorn chickens is largely explained by a limited number of QTLs
    • Kerje S, Carlborg O, Jacobsson L, Schutz K, Hartmann C, et al. (2003) The twofold difference in adult size between the red junglefowl and White Leghorn chickens is largely explained by a limited number of QTLs. Anim Genet 34: 264-274.
    • (2003) Anim Genet , vol.34 , pp. 264-274
    • Kerje, S.1    Carlborg, O.2    Jacobsson, L.3    Schutz, K.4    Hartmann, C.5
  • 7
    • 30444447089 scopus 로고    scopus 로고
    • Mapping quantitative trait loci affecting fatness and breast muscle weight in meat-type chicken lines divergently selected on abdominal fatness
    • Lagarrigue S, Pitel F, Carre W, Abasht B, Le Roy P, et al. (2006) Mapping quantitative trait loci affecting fatness and breast muscle weight in meat-type chicken lines divergently selected on abdominal fatness. Genet Sel Evol 38: 85-97.
    • (2006) Genet Sel Evol , vol.38 , pp. 85-97
    • Lagarrigue, S.1    Pitel, F.2    Carre, W.3    Abasht, B.4    Le Roy, P.5
  • 8
    • 33746265409 scopus 로고    scopus 로고
    • QTLs associated with growth traits and abdominal fat weight and their interactions with gender and hatch in commercial meat-type chickens
    • Atzmon G, Ronin YI, Korol A, Yonash N, Cheng H, et al. (2006) QTLs associated with growth traits and abdominal fat weight and their interactions with gender and hatch in commercial meat-type chickens. Anim Genet 37: 352-358.
    • (2006) Anim Genet , vol.37 , pp. 352-358
    • Atzmon, G.1    Ronin, Y.I.2    Korol, A.3    Yonash, N.4    Cheng, H.5
  • 9
    • 33744491277 scopus 로고    scopus 로고
    • A genome scan for quantitative trait loci associated with body weight at different developmental stages in chickens
    • Gao Y, Hu XX, Du Z, Deng XM, Huang YH, et al. (2006) A genome scan for quantitative trait loci associated with body weight at different developmental stages in chickens. Anim Genet 37: 276-278.
    • (2006) Anim Genet , vol.37 , pp. 276-278
    • Gao, Y.1    Hu, X.X.2    Du, Z.3    Deng, X.M.4    Huang, Y.H.5
  • 10
    • 70449380498 scopus 로고    scopus 로고
    • Mapping quantitative trait loci regulating chicken body composition traits
    • Gao Y, Du ZQ, Wei WH, Yu XJ, Deng XM, et al. (2009) Mapping quantitative trait loci regulating chicken body composition traits. Anim Genet 40 (6): 952-954.
    • (2009) Anim Genet , vol.40 , Issue.6 , pp. 952-954
    • Gao, Y.1    Du, Z.Q.2    Wei, W.H.3    Yu, X.J.4    Deng, X.M.5
  • 11
    • 34547682306 scopus 로고    scopus 로고
    • Mapping quantitative trait loci affecting body weight and abdominal fat weight on chicken chromosome one
    • Liu X, Li H, Wang S, Hu X, Gao Y, et al. (2007) Mapping quantitative trait loci affecting body weight and abdominal fat weight on chicken chromosome one. Poult Sci 86: 1084-1089.
    • (2007) Poult Sci , vol.86 , pp. 1084-1089
    • Liu, X.1    Li, H.2    Wang, S.3    Hu, X.4    Gao, Y.5
  • 12
    • 33947546599 scopus 로고    scopus 로고
    • Genome-wide linkage analysis to identify chromosomal regions affecting phenotypic traits in the chicken. III. Skeletal integrity
    • Zhou H, Deeb N, Evock-Clover CM, Mitchell AD, Ashwell CM, et al. (2007) Genome-wide linkage analysis to identify chromosomal regions affecting phenotypic traits in the chicken. III. Skeletal integrity. Poult Sci 86: 255.
    • (2007) Poult Sci , vol.86 , pp. 255
    • Zhou, H.1    Deeb, N.2    Evock-Clover, C.M.3    Mitchell, A.D.4    Ashwell, C.M.5
  • 13
    • 35848946380 scopus 로고    scopus 로고
    • SNP mapping of QTL affecting growth and fatness on chicken GGA1
    • Rao Y, Shen X, Xia M, Luo C, Nie Q, et al. (2007) SNP mapping of QTL affecting growth and fatness on chicken GGA1. Genet Sel Evol 39: 569-582.
    • (2007) Genet Sel Evol , vol.39 , pp. 569-582
    • Rao, Y.1    Shen, X.2    Xia, M.3    Luo, C.4    Nie, Q.5
  • 14
    • 62949091511 scopus 로고    scopus 로고
    • Quantitative trait loci for performance traits in a broiler×layer cross
    • Ambo M, Moura AS, Ledur MC, Pinto LF, Baron EE, et al. (2009) Quantitative trait loci for performance traits in a broiler×layer cross. Anim Genet 40: 200-208.
    • (2009) Anim Genet , vol.40 , pp. 200-208
    • Ambo, M.1    Moura, A.S.2    Ledur, M.C.3    Pinto, L.F.4    Baron, E.E.5
  • 15
    • 52049106813 scopus 로고    scopus 로고
    • Dissection of the genetic architecture of body weight in chicken reveals the impact of epistasis on domestication traits
    • Le Rouzic A, Alvarez-Castro JM, Carlborg O, (2008) Dissection of the genetic architecture of body weight in chicken reveals the impact of epistasis on domestication traits. Genetics 179: 1591-1599.
    • (2008) Genetics , vol.179 , pp. 1591-1599
    • Le Rouzic, A.1    Alvarez-Castro, J.M.2    Carlborg, O.3
  • 16
    • 67649116325 scopus 로고    scopus 로고
    • Genetic analysis of an F(2) intercross between two chicken lines divergently selected for body-weight
    • Wahlberg P, Carlborg O, Foglio M, Tordoir X, Syvanen AC, et al. (2009) Genetic analysis of an F(2) intercross between two chicken lines divergently selected for body-weight. BMC Genomics 10: 248.
    • (2009) BMC Genomics , vol.10 , pp. 248
    • Wahlberg, P.1    Carlborg, O.2    Foglio, M.3    Tordoir, X.4    Syvanen, A.C.5
  • 17
    • 63849331330 scopus 로고    scopus 로고
    • Genetic mapping of quantitative trait loci affecting growth and carcass traits in F2 intercross chickens
    • Uemoto Y, Sato S, Odawara S, Nokata H, Oyamada Y, et al. (2009) Genetic mapping of quantitative trait loci affecting growth and carcass traits in F2 intercross chickens. Poult Sci 88: 477-482.
    • (2009) Poult Sci , vol.88 , pp. 477-482
    • Uemoto, Y.1    Sato, S.2    Odawara, S.3    Nokata, H.4    Oyamada, Y.5
  • 18
    • 66249122107 scopus 로고    scopus 로고
    • Mapping genes for complex traits in domestic animals and their use in breeding programmes
    • Goddard ME, Hayes BJ, (2009) Mapping genes for complex traits in domestic animals and their use in breeding programmes. Nat Rev Genet 10: 381-391.
    • (2009) Nat Rev Genet , vol.10 , pp. 381-391
    • Goddard, M.E.1    Hayes, B.J.2
  • 19
    • 78149436393 scopus 로고    scopus 로고
    • Genome wide association studies for milk production traits in Chinese Holstein population
    • Jiang L, Liu J, Sun D, Ma P, Ding X, et al. (2010) Genome wide association studies for milk production traits in Chinese Holstein population. PLoS One 5: e13661.
    • (2010) PLoS One , vol.5
    • Jiang, L.1    Liu, J.2    Sun, D.3    Ma, P.4    Ding, X.5
  • 20
    • 13144306071 scopus 로고    scopus 로고
    • Genome-wide association studies for common diseases and complex traits
    • Hirschhorn JN, Daly MJ, (2005) Genome-wide association studies for common diseases and complex traits. Nat Rev Genet 6: 95-108.
    • (2005) Nat Rev Genet , vol.6 , pp. 95-108
    • Hirschhorn, J.N.1    Daly, M.J.2
  • 21
    • 4544358547 scopus 로고    scopus 로고
    • Skeletal muscle FOXO1 (FKHR) transgenic mice have less skeletal muscle mass, down-regulated Type I (slow twitch/red muscle) fiber genes, and impaired glycemic control
    • Kamei Y, Miura S, Suzuki M, Kai Y, Mizukami J, et al. (2004) Skeletal muscle FOXO1 (FKHR) transgenic mice have less skeletal muscle mass, down-regulated Type I (slow twitch/red muscle) fiber genes, and impaired glycemic control. J Biol Chem 279: 41114-41123.
    • (2004) J Biol Chem , vol.279 , pp. 41114-41123
    • Kamei, Y.1    Miura, S.2    Suzuki, M.3    Kai, Y.4    Mizukami, J.5
  • 22
    • 73949116424 scopus 로고    scopus 로고
    • Time course expression of Foxo transcription factors in skeletal muscle following corticosteroid administration
    • Cho JE, Fournier M, Da X, Lewis MI, (2010) Time course expression of Foxo transcription factors in skeletal muscle following corticosteroid administration. J Appl Physiol 108: 137.
    • (2010) J Appl Physiol , vol.108 , pp. 137
    • Cho, J.E.1    Fournier, M.2    Da, X.3    Lewis, M.I.4
  • 23
    • 34848838902 scopus 로고    scopus 로고
    • A Foxo/Notch pathway controls myogenic differentiation and fiber type specification
    • Kitamura T, Kitamura YI, Funahashi Y, Shawber CJ, Castrillon DH, et al. (2007) A Foxo/Notch pathway controls myogenic differentiation and fiber type specification. J Clin Invest 117: 2477-2485.
    • (2007) J Clin Invest , vol.117 , pp. 2477-2485
    • Kitamura, T.1    Kitamura, Y.I.2    Funahashi, Y.3    Shawber, C.J.4    Castrillon, D.H.5
  • 24
    • 33750400410 scopus 로고    scopus 로고
    • Akt signalling through GSK-3b, mTOR and Foxo1 is involved in human skeletal muscle hypertrophy and atrophy
    • Leger B, Cartoni R, Praz M, Lamon S, Deriaz O, et al. (2006) Akt signalling through GSK-3b, mTOR and Foxo1 is involved in human skeletal muscle hypertrophy and atrophy. J Physiol 576: 923-933.
    • (2006) J Physiol , vol.576 , pp. 923-933
    • Leger, B.1    Cartoni, R.2    Praz, M.3    Lamon, S.4    Deriaz, O.5
  • 25
    • 34547101264 scopus 로고    scopus 로고
    • FOXO1 regulates the expression of 4E-BP1 and inhibits mTOR signaling in mammalian skeletal muscle
    • Southgate RJ, Neill B, Prelovsek O, El-Osta A, Kamei Y, et al. (2007) FOXO1 regulates the expression of 4E-BP1 and inhibits mTOR signaling in mammalian skeletal muscle. J Biol Chem 282: 21176-21186.
    • (2007) J Biol Chem , vol.282 , pp. 21176-21186
    • Southgate, R.J.1    Neill, B.2    Prelovsek, O.3    El-Osta, A.4    Kamei, Y.5
  • 26
    • 78651321594 scopus 로고    scopus 로고
    • FoxO1 regulates muscle fiber-type specification and inhibits calcineurin signaling during C2C12 myoblast differentiation
    • Yuan Y, Shi X, Liu Y, Yang G, (2011) FoxO1 regulates muscle fiber-type specification and inhibits calcineurin signaling during C2C12 myoblast differentiation. Mol Cell Biochem 348: 77-87.
    • (2011) Mol Cell Biochem , vol.348 , pp. 77-87
    • Yuan, Y.1    Shi, X.2    Liu, Y.3    Yang, G.4
  • 28
    • 84863119402 scopus 로고    scopus 로고
    • National Center for Biotechnology Information, Available:. Accessed 06 July 2011
    • National Center for Biotechnology Information (2011) Entrez gene. Available: http://www.ncbi.nlm.nih.gov. Accessed 06 July 2011.
    • (2011) Entrez gene
  • 29
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs: target recognition and regulatory functions
    • Bartel DP, (2009) MicroRNAs: target recognition and regulatory functions. Cell 136: 215-233.
    • (2009) Cell , vol.136 , pp. 215-233
    • Bartel, D.P.1
  • 30
    • 74249084440 scopus 로고    scopus 로고
    • miR-15a and miR-16-1 in cancer: discovery, function and future perspectives
    • Aqeilan RI, Calin GA, Croce CM, (2010) miR-15a and miR-16-1 in cancer: discovery, function and future perspectives. Cell Death Differ 17: 215-220.
    • (2010) Cell Death Differ , vol.17 , pp. 215-220
    • Aqeilan, R.I.1    Calin, G.A.2    Croce, C.M.3
  • 32
    • 34250805982 scopus 로고    scopus 로고
    • MicroRNA targeting specificity in mammals: determinants beyond seed pairing
    • Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, et al. (2007) MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol Cell 27: 91-105.
    • (2007) Mol Cell , vol.27 , pp. 91-105
    • Grimson, A.1    Farh, K.K.2    Johnston, W.K.3    Garrett-Engele, P.4    Lim, L.P.5
  • 33
    • 77957866076 scopus 로고    scopus 로고
    • Profiling and functional analyses of microRNAs and their target gene products in human uterine leiomyomas
    • Zavadil J, Ye H, Liu Z, Wu J, Lee P, et al. (2010) Profiling and functional analyses of microRNAs and their target gene products in human uterine leiomyomas. PloS ONE 5: e12362.
    • (2010) PloS ONE , vol.5
    • Zavadil, J.1    Ye, H.2    Liu, Z.3    Wu, J.4    Lee, P.5
  • 34
    • 33747849920 scopus 로고    scopus 로고
    • RNAhybrid: microRNA target prediction easy, fast and flexible
    • Kruger J, Rehmsmeier M, (2006) RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Res 34: W451-454.
    • (2006) Nucleic Acids Res , vol.34
    • Kruger, J.1    Rehmsmeier, M.2
  • 35
    • 79955007478 scopus 로고    scopus 로고
    • Fine mapping and replication of QTL in outbred chicken advanced intercross lines
    • Besnier F, Wahlberg P, Ronnegard L, Ek W, Andersson L, et al. (2011) Fine mapping and replication of QTL in outbred chicken advanced intercross lines. Genet Sel Evol 43: 33.
    • (2011) Genet Sel Evol , vol.43 , pp. 33
    • Besnier, F.1    Wahlberg, P.2    Ronnegard, L.3    Ek, W.4    Andersson, L.5
  • 36
    • 79960301737 scopus 로고    scopus 로고
    • Genome-wide association study of body weight in chicken F2 resource population
    • doi:10.1371/journal.pone.0021872
    • Gu X, Feng C, Ma L, Song C, Wang Y, et al. (2011) Genome-wide association study of body weight in chicken F2 resource population. PLoS ONE 6 (7): e21872 doi:10.1371/journal.pone.0021872.
    • (2011) PLoS ONE , vol.6 , Issue.7
    • Gu, X.1    Feng, C.2    Ma, L.3    Song, C.4    Wang, Y.5
  • 37
    • 25444517940 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms of the chicken insulin-like factor binding protein 2 gene associated with chicken growth and carcass traits
    • Lei MM, Nie QH, Peng X, Zhang DX, Zhang XQ, (2005) Single nucleotide polymorphisms of the chicken insulin-like factor binding protein 2 gene associated with chicken growth and carcass traits. Poult Sci 84: 1191.
    • (2005) Poult Sci , vol.84 , pp. 1191
    • Lei, M.M.1    Nie, Q.H.2    Peng, X.3    Zhang, D.X.4    Zhang, X.Q.5
  • 38
    • 78649330039 scopus 로고    scopus 로고
    • SNP detection and prediction of variability between chicken lines using genome resequencing of DNA pools
    • Marklund S, Carlborg O, (2010) SNP detection and prediction of variability between chicken lines using genome resequencing of DNA pools. BMC Genomics 11: 665.
    • (2010) BMC Genomics , vol.11 , pp. 665
    • Marklund, S.1    Carlborg, O.2
  • 39
    • 84863140486 scopus 로고    scopus 로고
    • Design Of A 60 K Illumina Iselect™ Beadchip Covering All Chicken Chromosomes
    • Town & Country Convention Center, San Diego, CA, USA
    • Groenen M, Hillier L, Crooijmans R, Warren W, Muir W, et al. (2009) Design Of A 60 K Illumina Iselect™ Beadchip Covering All Chicken Chromosomes. Plant & Animal Genomes XVII Conference. Town & Country Convention Center, San Diego, CA, USA.
    • (2009) Plant & Animal Genomes XVII Conference
    • Groenen, M.1    Hillier, L.2    Crooijmans, R.3    Warren, W.4    Muir, W.5
  • 40
    • 49049108362 scopus 로고    scopus 로고
    • Parallel and serial computing tools for testing single-locus and epistatic SNP effects of quantitative traits in genome-wide association studies
    • Ma L, Runesha HB, Dvorkin D, Garbe JR, Da Y, (2008) Parallel and serial computing tools for testing single-locus and epistatic SNP effects of quantitative traits in genome-wide association studies. BMC Bioinformatics 9: 315.
    • (2008) BMC Bioinformatics , vol.9 , pp. 315
    • Ma, L.1    Runesha, H.B.2    Dvorkin, D.3    Garbe, J.R.4    Da, Y.5
  • 41
    • 34247848075 scopus 로고    scopus 로고
    • Detection of SNP epistasis effects of quantitative traits using an extended Kempthorne model
    • Mao Y, London NR, Ma L, Dvorkin D, Da Y, (2006) Detection of SNP epistasis effects of quantitative traits using an extended Kempthorne model. Physiol Genomics 28: 46-52.
    • (2006) Physiol Genomics , vol.28 , pp. 46-52
    • Mao, Y.1    London, N.R.2    Ma, L.3    Dvorkin, D.4    Da, Y.5
  • 42
    • 84863130100 scopus 로고    scopus 로고
    • Minitab Inc., Available:. Accessed 30 June 2011
    • Minitab Inc. (2011) Minitab® 16. Available: http://www.minitab.com. Accessed 30 June 2011.
    • (2011) Minitab® 16
  • 43
    • 58249124501 scopus 로고    scopus 로고
    • Establishing an adjusted p-value threshold to control the family-wide type 1 error in genome wide association studies
    • Duggal P, Gillanders EM, Holmes TN, Bailey-Wilson JE, (2008) Establishing an adjusted p-value threshold to control the family-wide type 1 error in genome wide association studies. BMC Genomics 9: 516.
    • (2008) BMC Genomics , vol.9 , pp. 516
    • Duggal, P.1    Gillanders, E.M.2    Holmes, T.N.3    Bailey-Wilson, J.E.4
  • 44
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: analysis and visualization of LD and haplotype maps
    • Barrett JC, Fry B, Maller J, Daly MJ, (2005) Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21: 263-265.
    • (2005) Bioinformatics , vol.21 , pp. 263-265
    • Barrett, J.C.1    Fry, B.2    Maller, J.3    Daly, M.J.4
  • 46
    • 84863140489 scopus 로고    scopus 로고
    • IBM Research, Available:. Accessed 18 May 2001
    • IBM Research (2001) RNA22 microRNA target detection. Available: http://cbcsrv.watson.ibm.com/rna22.html. Accessed 18 May 2001.
    • (2001) RNA22 microRNA target detection
  • 48
    • 84863132177 scopus 로고    scopus 로고
    • Whitehead Institute for Biomedical Research, Available:. Accessed 30 June 2011
    • Whitehead Institute for Biomedical Research (2011) TargetScan release 5.2. Available: http://www.targetscan.org. Accessed 30 June 2011.
    • (2011) TargetScan release 5.2
  • 49
    • 84863173986 scopus 로고    scopus 로고
    • Ensembl Genome Browser, Available:. Accessed 30 June 2011
    • Ensembl Genome Browser (2011) Ensembl release 63. Available: http://useast.ensembl.org/index.html. Accessed 30 June 2011.
    • (2011) Ensembl release , vol.63


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.