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Volumn 190, Issue 2, 2012, Pages 449-458

Imputation of single-nucleotide polymorphisms in inbred mice using local phylogeny

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL EXPERIMENT; ARTICLE; CONTROLLED STUDY; GENE SEQUENCE; GENOTYPE; MOUSE; NONHUMAN; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84863150047     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.111.132381     Document Type: Article
Times cited : (40)

References (19)
  • 2
    • 66249148986 scopus 로고    scopus 로고
    • Lineage-specific biology revealed by a finished genome assembly of the mouse
    • Church, D. M., L. Goodstadt, L. W. Hillier, M. C. Zody, S. Goldstein et al., 2009 Lineage-specific biology revealed by a finished genome assembly of the mouse. PLoS Biol. 7: e1000112.
    • (2009) PLoS Biol , vol.7
    • Church, D.M.1    Goodstadt, L.2    Hillier, L.W.3    Zody, M.C.4    Goldstein, S.5
  • 3
    • 84863115856 scopus 로고    scopus 로고
    • The genome architecture of the Collaborative Cross mouse genetic reference population
    • Collaborative Cross Consortium
    • Collaborative Cross Consortium, 2012 The genome architecture of the Collaborative Cross mouse genetic reference population. Genetics 190: 389-401.
    • (2012) Genetics , vol.190 , pp. 389-401
  • 4
    • 77951139631 scopus 로고    scopus 로고
    • Genome remodelling in a basal-like breast cancer metastasis and xenograft
    • Ding, L., M. J. Ellis, S. Li, D. E. Larson, K. Chen et al., 2010 Genome remodelling in a basal-like breast cancer metastasis and xenograft. Nature 464: 999-1005.
    • (2010) Nature , vol.464 , pp. 999-1005
    • Ding, L.1    Ellis, M.J.2    Li, S.3    Larson, D.E.4    Chen, K.5
  • 5
    • 34548295740 scopus 로고    scopus 로고
    • A sequence-based variation map of 8.27 million SNPs in inbred mouse strain
    • Frazer, K. A., E. Eskin, H. M. Kang, M. A. Bogue, D. A. Hinds et al., 2007 A sequence-based variation map of 8.27 million SNPs in inbred mouse strain. Nature 448: 1050-1053.
    • (2007) Nature , vol.448 , pp. 1050-1053
    • Frazer, K.A.1    Eskin, E.2    Kang, H.M.3    Bogue, M.A.4    Hinds, D.A.5
  • 6
    • 0022211482 scopus 로고
    • Statistical properties of the number of recombination events in the history of a sample of DNA sequences
    • Hudson, R. R., and N. L. Kaplan, 1985 Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111: 147-164.
    • (1985) Genetics , vol.111 , pp. 147-164
    • Hudson, R.R.1    Kaplan, N.L.2
  • 7
    • 77950790709 scopus 로고    scopus 로고
    • EMINIM: An adaptive and memory-efficient algorithm for genotype imputation
    • Kang, H. M., N. A. Zaitlen, and E. Eskin, 2010 EMINIM: an adaptive and memory-efficient algorithm for genotype imputation. J. Comput. Biol. 17: 547-560.
    • (2010) J. Comput. Biol , vol.17 , pp. 547-560
    • Kang, H.M.1    Zaitlen, N.A.2    Eskin, E.3
  • 8
    • 80052851950 scopus 로고    scopus 로고
    • Mouse genomic variation and its effect on phenotypes and gene regulation
    • Keane, T. M., L. Goodstadt, P. Danecek, M. A. White, K. Wong et al., 2011 Mouse genomic variation and its effect on phenotypes and gene regulation. Nature 477: 289-294.
    • (2011) Nature , vol.477 , pp. 289-294
    • Keane, T.M.1    Goodstadt, L.2    Danecek, P.3    White, M.A.4    Wong, K.5
  • 9
    • 78349254248 scopus 로고    scopus 로고
    • Fine mapping in 94 inbred mouse strains using a highdensity haplotype resource
    • Kirby, A., H. M. Kang, C. M. Wade, C. Cotsapas, E. Kostem et al., 2010 Fine mapping in 94 inbred mouse strains using a highdensity haplotype resource. Genetics 185: 1081-1095.
    • (2010) Genetics , vol.185 , pp. 1081-1095
    • Kirby, A.1    Kang, H.M.2    Wade, C.M.3    Cotsapas, C.4    Kostem, E.5
  • 10
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li, H., J. Ruan, and R. Durbin, 2008 Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res. 18: 1851-1858.
    • (2008) Genome Res , vol.18 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 12
    • 70149093912 scopus 로고    scopus 로고
    • Recurring mutations found by sequencing an acute myeloid leukemia genome
    • Mardis, E. R., L. Ding, D. J. Dooling, D. E. Larson, M. D. McLellan et al., 2009 Recurring mutations found by sequencing an acute myeloid leukemia genome. N. Engl. J. Med. 361: 1058-1066.
    • (2009) N. Engl. J. Med , vol.361 , pp. 1058-1066
    • Mardis, E.R.1    Ding, L.2    Dooling, D.J.3    Larson, D.E.4    McLellan, M.D.5
  • 15
    • 77958056825 scopus 로고    scopus 로고
    • Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology. Association for Computing Machinery, Niagara Falls, NY
    • Wang, J., K. J. Moore, Q. Zhang, F. Pardo-Manuel de Villena, W. Wang et al. 2010 Genome-wide compatible SNP intervals and their properties. Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology. Association for Computing Machinery, Niagara Falls, NY.
    • (2010) Genome-wide Compatible SNP Intervals and Their Properties
    • Wang, J.1    Moore, K.J.2    Zhang, Q.3    De Villena, P.-M.F.4    Wang, W.5
  • 16
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • Waterston, R. H., K. Lindblad-Toh, E. Birney, J. Rogers, J. F. Abril et al., 2002 Initial sequencing and comparative analysis of the mouse genome. Nature 420: 520-562.
    • (2002) Nature , vol.420 , pp. 520-562
    • Waterston, R.H.1    Lindblad-Toh, K.2    Birney, E.3    Rogers, J.4    Abril, J.F.5
  • 17
    • 34548348147 scopus 로고    scopus 로고
    • On the subspecific origin of the laboratory mouse
    • Yang, H., T. A. Bell, G. A. Churchill, and F. Pardo-Manuel de Villena, 2007 On the subspecific origin of the laboratory mouse. Nat. Genet. 39: 1100-1107.
    • (2007) Nat. Genet , vol.39 , pp. 1100-1107
    • Yang, H.1    Bell, T.A.2    Churchill, G.A.3    De Villena, P.-M.F.4
  • 18
    • 69549102945 scopus 로고    scopus 로고
    • A customized and versatile high-density genotyping array for the mouse
    • Yang, H., Y. Ding, L. N. Hutchins, J. Szatkiewicz, T. A. Bell et al., 2009 A customized and versatile high-density genotyping array for the mouse. Nat. Methods 6: 663-666.
    • (2009) Nat. Methods , vol.6 , pp. 663-666
    • Yang, H.1    Ding, Y.2    Hutchins, L.N.3    Szatkiewicz, J.4    Bell, T.A.5
  • 19
    • 79959735506 scopus 로고    scopus 로고
    • Subspecific origin and haplotype diversity in the laboratory mouse
    • Yang, H., J. Wang, J. Didion, R. J. Buus, T. A. Bell et al., 2011 Subspecific origin and haplotype diversity in the laboratory mouse. Nat. Genet. 43(648): 655.
    • (2011) Nat. Genet , vol.43 , Issue.648 , pp. 655
    • Yang, H.1    Wang, J.2    Didion, J.3    Buus, R.J.4    Bell, T.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.