Detection of hypermethylated vimentin in urine of patients with colorectal cancer

Journal of Molecular Diagnostics

Volumn 14, Issue 2, 2012, Pages 112-119

  Song, Benjamin P ^a   Jain, Surbhi ^a   Lin, Selena Y ^a   Chen, Quan ^a   Block, Timothy M ^a   Song, Wei ^b   Brenner, Dean E ^c   Su, Ying Hsiu ^a  

^a DREXEL UNIVERSITY COLLEGE OF MEDICINE   (United States)

^b JBS Science Inc   (United States)

^c UNIVERSITY OF MICHIGAN HEALTH SYSTEM   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; VIMENTIN;

ADULT; AGED; ARTICLE; CANCER PATIENT; CLINICAL ARTICLE; COLORECTAL CANCER; CONTROLLED STUDY; DNA DETERMINATION; DNA SEQUENCE; EPIGENETICS; FEMALE; HUMAN; MALE; MOLECULAR WEIGHT; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; URINALYSIS;

ADULT; AGED; AGED, 80 AND OVER; COLORECTAL NEOPLASMS; DNA METHYLATION; DNA, NEOPLASM; EPIGENOMICS; FEMALE; HUMANS; MALE; MIDDLE AGED; NEOPLASTIC CELLS, CIRCULATING; REAL-TIME POLYMERASE CHAIN REACTION; TUMOR MARKERS, BIOLOGICAL; VIMENTIN;

EID: 84863115484     PISSN: 15251578     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmoldx.2011.12.003     Document Type: Article

References (59)

1. R. Siegel, E. Ward, O. Brawley, A. Jemal Cancer statistics, 2011: the impact of eliminating socioeconomic and racial disparities on premature cancer deaths CA Cancer J Clin 61 2011 212 236
2. S.M. Dong, G. Traverso, C. Johnson, L. Geng, R. Favis, K. Boynton, K. Hibi, S.N. Goodman, M. D'Allessio, P. Paty, S.R. Hamilton, D. Sidransky, F. Barany, B. Levin, A. Shuber, K.W. Kinzler, B. Vogelstein, J. Jen Detecting colorectal cancer in stool with the use of multiple genetic targets J Natl Cancer Inst 93 2001 858 865 (Pubitemid 32586613)
3. N.K. Osborn, D.A. Ahlquist Stool screening for colorectal cancer: molecular approaches Gastroenterology 128 2005 192 206 (Pubitemid 40039970)
4. S. Syngal, E. Stoffel, D. Chung, C. Willett, D. Schoetz, P. Schroy, D. Jagadeesh, K. Morel, M. Ross Detection of stool DNA mutations before and after treatment of colorectal neoplasia Cancer 106 2006 277 283 (Pubitemid 43100434)
5. D.A. Ahlquist, J.E. Skoletsky, K. Boynton, J.J. Harrington, D.W. Mahoney, W.E. Pierceall, S.N. Thibodeau, A.P. Shuber Colorectal cancer screening by detection of altered human DNA in stool: feasibility of a multitarget assay panel Gastroenterology 119 2000 1219 1227
6. G. Traverso, A. Shuber, B. Levin, C. Johnson, L. Olsson, D.J. Schoetz Jr., S.R. Hamilton, K. Boynton, K.W. Kinzler, B. Vogelstein Detection of APC mutations in fecal DNA from patients with colorectal tumors N Engl J Med 346 2002 311 320 (Pubitemid 34438838)
7. T.F. Imperiale, D.F. Ransohoff, S.H. Itzkowitz, B.A. Turnbull, M.E. Ross Colorectal Cancer Study Group Fecal DNA versus fecal occult blood for colorectal-cancer screening in an average-risk population N Engl J Med 351 2004 2704 2714 (Pubitemid 39665324)
8. D.A. Ahlquist, D.J. Sargent, C.L. Loprinzi, T.R. Levin, D.K. Rex, D.J. Ahnen, K. Knigge, M.P. Lance, L.J. Burgart, S.R. Hamilton, J.E. Allison, M.J. Lawson, M.E. Devens, J.J. Harrington, S.L. Hillman Stool DNA and occult blood testing for screen detection of colorectal neoplasia Ann Intern Med 149 2008 441 450
9. E. Bonanno, F. Rulli, G. Galat, S. Pucci, F. Sesti, A.M. Farinon, L.G. Spagnoli Stool test for colorectal cancer screening: what is going on Surg Oncol 16 Suppl 1 2007 43 45 (Pubitemid 350198920)
10. B. Levin, D.A. Lieberman, B. McFarland, K.S. Andrews, D. Brooks, J. Bond, C. Dash, F.M. Giardiello, S. Glick, D. Johnson, C.D. Johnson, T.R. Levin, P.J. Pickhardt, D.K. Rex, R.A. Smith, A. Thorson, S.J. Winawer American Cancer Society Colorectal Cancer Advisory Group; US Multi-Society Task Force; American College of Radiology Colon Cancer Committee Screening and surveillance for the early detection of colorectal cancer and adenomatous polyps, 2008: a joint guideline from the American Cancer Society, the US Multi-Society Task Force on Colorectal Cancer, and the American College of Radiology Gastroenterology 134 2008 1570 1595 (Pubitemid 351615355)
11. C.H.W. Klaassen, M.A.F. Jeunink, C.F.M. Prinsen, T.J.M. Ruers, A.C.I.T.L. Tan, L.J.A. Strobbe, F.B.J.M. Thunnissen Quantification of human DNA in feces as a diagnostic test for the presence of colorectal cancer Clin Chem 49 2003 1185 1187 (Pubitemid 36751108)
12. F. Diehl, K. Schmidt, K.H. Durkee, K.J. Moore, S.N. Goodman, A.P. Shuber, K.W. Kinzler, B. Vogelstein Analysis of mutations in DNA isolated from plasma and stool of colorectal cancer patients Gastroenterology 135 2008 489 498
13. P. Anker Quantitative aspects of plasma/serum DNA in cancer patients Ann N Y Acad Sci 906 2000 5 7 (Pubitemid 30255448)
14. P. Anker, H. Mulcahy, X.Q. Chen, M. Stroun Detection of circulating tumour DNA in the blood (plasma/serum) of cancer patients Cancer Metastasis Rev 18 1999 65 73 (Pubitemid 29411092)
15. F. Diehl, K. Schmidt, M.A. Choti, K. Romans, S. Goodman, M. Li, K. Thornton, N. Agrawal, L. Sokoll, S.A. Szabo, K.W. Kinzler, B. Vogelstein, L.A. Diaz Jr Circulating mutant DNA to assess tumor dynamics Nat Med 14 2008 985 990
16. O. Gautschi, C. Bigosch, B. Huegli, M. Jermann, A. Marx, E. Chass, D. Ratschiller, W. Weder, M. Joerger, D.C. Betticher, R.A. Stahel, A. Ziegler Circulating deoxyribonucleic acid as prognostic marker in non-small-cell lung cancer patients undergoing chemotherapy J Clin Oncol 22 2004 4157 4164 (Pubitemid 41185186)
17. J.G. Herman Circulating methylated DNA Ann N Y Acad Sci 1022 2004 33 39 (Pubitemid 38951578)
18. H.E. Mulcahy, J. Lyautey, C. Lederrey, X.Q. Chen, F. Lefort, V. Vasioukhin, P. Anker, E.M. Alstead, M.J. Farthing, M. Stroun Plasma DNA k-ras mutations in patients with gastrointestinal malignancies Ann N Y Acad Sci 906 2000 25 28 (Pubitemid 30255453)
19. B.M. Ryan, F. Lefort, R. McManus, J. Daly, P.W.N. Keeling, D.G. Weir, D. Kelleher A prospective study of circulating mutant kras2 in the serum of patients with colorectal neoplasia: strong prognostic indicator in postoperative follow up Gut 52 2003 101 108 (Pubitemid 36020774)
20. A. Shirahata, K. Sakuraba, T. Goto, M. Saito, K. Ishibashi, G. Kigawa, H. Nemoto, K. Hibi Detection of vimentin (vim) methylation in the serum of colorectal cancer patients Anticancer Res 30 2010 5015 5018
21. R. Grutzmann, B. Molnar, C. Pilarsky, J.K. Habermann, P.M. Schlag, H.D. Saeger, S. Miehlke, T. Stolz, F. Model, U.J. Roblick, H.P. Bruch, R. Koch, V. Liebenberg, T. Devos, X. Song, R.H. Day, A.Z. Sledziewski, C. Lofton-Day Sensitive detection of colorectal cancer in peripheral blood by septin 9 DNA methylation assay PLoS One 3 2008 e3759
22. C. Lofton-Day, F. Model, T. DeVos, R. Tetzner, J. Distler, M. Schuster, X. Song, R. Lesche, V. Liebenberg, M. Ebert, B. Molnar, R. Grtzmann, C. Pilarsky, A. Sledziewski DNA methylation biomarkers for blood-based colorectal cancer screening Clin Chem 54 2008 414 423 (Pubitemid 351302625)
23. A.V. Lichtenstein, H.S. Melkonyan, D. Tomei, S.R. Umansky Circulating nucleic acids and apoptosis Ann N Y Acad Sci 945 2001 239 249 (Pubitemid 33022460)
24. Y.H. Su, M. Wang, D.E. Brenner, A. Ng, H. Melkonyan, S. Umansky, S. Syngal, T.M. Block Human urine contains small, 150 to 250 nucleotide-sized, soluble DNA derived from the circulation and may be useful in the detection of colorectal cancer J Mol Diagn 6 2004 101 107 (Pubitemid 38578985)
25. A.K.C. Chan, R.W.K. Chiu, Y.M.D. Lo Cell-free nucleic acids in plasma, serum and urine: a new tool in molecular diagnosis Ann Clin Biochem 40 2003 122 130 (Pubitemid 36359862)
26. A.K. Pathak, M. Bhutani, S. Kumar, A. Mohan, R. Guleria Circulating cell-free DNA in plasma/serum of lung cancer patients as a potential screening and prognostic tool Clin Chem 52 2006 1833 1842 (Pubitemid 44470688)
27. P. Anker, J. Lyautey, C. Lederrey, M. Stroun Circulating nucleic acids in plasma or serum Clin Chim Acta 313 2001 143 146 (Pubitemid 33016704)
28. S. Jahr, H. Hentze, S. Englisch, D. Hardt, F.O. Fackelmayer, R. Hesch, R. Knippers DNA fragments in the blood plasma of cancer patients: quantitations and evidence for their origin from apoptotic and necrotic cells Cancer Res 61 2001 1659 1665 (Pubitemid 34292602)
29. M. Stroun, P. Maurice, V. Vasioukhin, J. Lyautey, C. Lederrey, F. Lefort, A. Rossier, X.Q. Chen, P. Anker The origin and mechanism of circulating DNA Ann N Y Acad Sci 906 2000 161 168 (Pubitemid 30255476)
30. Y.-H. Su, J. Song, Z. Wang, X. Wang, M. Wang, D.E. Brenner, T.M. Block Removal of high molecular weight DNA by carboxylated magnetic beads enhances the detection of mutated k-ras DNA in urine Ann N Y Acad Sci 1137 2008 82 91
31. M. Wang, T.M. Block, L. Steel, D.E. Brenner, Y.H. Su Preferential isolation of fragmented DNA enhances the detection of circulating mutated k-ras DNA Clin Chem 50 2004 211 213 (Pubitemid 38125723)
32. K.C.A. Chan, S.F. Leung, S.W. Yeung, A.T.C. Chan, Y.M.D. Lo Quantitative analysis of the transrenal excretion of circulating EBV DNA in nasopharyngeal carcinoma patients Clin Cancer Res 14 2008 4809 4813
33. H.S. Melkonyan, W.J. Feaver, E. Meyer, V. Scheinker, E.M. Shekhtman, Z. Xin, S.R. Umansky Transrenal nucleic acids: from proof of principle to clinical tests; problems and solutions Ann N Y Acad Sci 1137 2008 73 81
34. E.M. Shekhtman, K. Anne, H.S. Melkonyan, D.J. Robbins, S.L. Warsof, S.R. Umansky Optimization of transrenal DNA analysis: detection of fetal DNA in maternal urine Clin Chem 55 2009 723 729
35. A. Sikora, G. Zimmermann, C. Rusterholz, D. Birri, V. Kolla, O. Lapaire, I. Hoesli, V. Kiefer, L. Jackson, S. Hahn Detection of increased amounts of cell-free fetal DNA with short PCR amplicons Clin Chem 56 2010 136 138
36. Y.-H. Su, M. Wang, P.A. Norton, D.E. Brenner, T.M. Block Detection of mutated k-ras DNA in urine, plasma and serum from patients with colorectal carcinoma or adenomatous polyps Ann N Y Acad Sci 1137 2008 197 201
37. D.A. Ahlquist Molecular detection of colorectal neoplasia Gastroenterology 138 2010 2127 2139
38. H. Zou, J.J. Harrington, A.M. Shire, R.L. Rego, L. Wang, M.E. Campbell, A.L. Oberg, D.A. Ahlquist Highly methylated genes in colorectal neoplasia: implications for screening Cancer Epidemiol Biomarkers Prev 16 2007 2686 2696 (Pubitemid 351196325)
39. S.H. Itzkowitz, L. Jandorf, R. Brand, L. Rabeneck, P.C. Schroy Iii, S. Sontag, D. Johnson, J. Skoletsky, K. Durkee, S. Markowitz, A. Shuber Improved fecal DNA test for colorectal cancer screening Clin Gastroenterol Hepatol 5 2007 111 117 (Pubitemid 46096834)
40. N. Kimura, T. Nagasaka, J. Murakami, H. Sasamoto, M. Murakami, N. Tanaka, N. Matsubara Methylation profiles of genes utilizing newly developed CpG island methylation microarray on colorectal cancer patients Nucleic Acids Res 33 2005 e46
41. W.M. Grady, J.M. Carethers Genomic and epigenetic instability in colorectal cancer pathogenesis Gastroenterology 135 2008 1079 1099
42. C.A. Iacobuzio-Donahue Epigenetic changes in cancer Annu Rev Pathol 4 2009 229 249
43. M. Kim, J. Lee, D. Sidransky DNA methylation markers in colorectal cancer Cancer Metastasis Rev 29 2010 181 206
44. S.D. Markowitz, M.M. Bertagnolli Molecular basis of colorectal cancer N Engl J Med 361 2009 2449 2460
45. W.D. Chen, Z.J. Han, J. Skoletsky, J. Olson, J. Sah, L. Myeroff, P. Platzer, S. Lu, D. Dawson, J. Willis, T.P. Pretlow, J. Lutterbaugh, L. Kasturi, J.K.V. Willson, J.S. Rao, A. Shuber, S.D. Markowitz Detection in fecal DNA of colon cancer-specific methylation of the nonexpressed vimentin gene J Natl Cancer Inst 97 2005 1124 1132 (Pubitemid 41511211)
46. H. Zou, J. Harrington, R.L. Rego, D.A. Ahlquist A novel method to capture methylated human DNA from stool: implications for colorectal cancer screening Clin Chem 53 2007 1646 1651 (Pubitemid 47340061)
47. H. Zou, W.R. Taylor, J.J. Harrington, F.T.N. Hussain, X. Cao, C.L. Loprinzi, T.R. Levine, D.K. Rex, D. Ahnen, K.L. Knigge, P. Lance, X. Jiang, D.I. Smith, D.A. Ahlquist High detection rates of colorectal neoplasia by stool DNA testing with a novel digital melt curve assay Gastroenterology 136 2009 459 470
48. K. Tanaka, A. Okamoto Degradation of DNA by bisulfite treatment Bioorg Med Chem Lett 17 2007 1912 1915 (Pubitemid 46367676)
49. A.M. Raizis, F. Schmitt, J.P. Jost A bisulfite method of 5-methylcytosine mapping that minimizes template degradation Anal Biochem 226 1995 161 166
50. S.Y. Lin, V. Dhillon, S. Jain, T.T. Chang, C.T. Hu, Y.J. Lin, S.H. Chen, K.C. Chang, W. Song, L. Yu, T.M. Block, Y.H. Su A locked nucleic acid clamp-mediated PCR assay for detection of a p53 codon 249 hotspot mutation in urine J Mol Diagn 13 2011 474 484
51. X.D. Ren, S.Y. Lin, X. Wang, T. Zhou, T.M. Block, Y.H. Su Rapid and sensitive detection of hepatitis b virus 1762T/1764A double mutation from hepatocellular carcinomas using LNA-mediated PCR clamping and hybridization probes J Virol Methods 158 2009 24 29
52. Y.H. Su, M. Wang, T.M. Block, O. Landt, I. Botezatu, O. Serdyuk, A. Lichtenstein, H. Melkonyan, L.D. Tomei, S. Umansky Transrenal DNA as a diagnostic tool: important technical notes Ann N Y Acad Sci 1022 2004 81 89 (Pubitemid 38951586)
53. K.N. Ballantyne, R.A.H. van Oorschot, R.J. Mitchell Locked nucleic acids in PCR primers increase sensitivity and performance Genomics 91 2008 301 305
54. K.S. Gustafson Locked nucleic acids can enhance the analytical performance of quantitative methylation-specific polymerase chain reaction J Mol Diagn 10 2008 33 42 (Pubitemid 351184833)
55. D. Latorra, K. Arar, J.M. Hurley Design considerations and effects of LNA in PCR primers Mol Cell Probes 17 2003 253 259 (Pubitemid 37346175)
56. O. Maertens, E. Legius, F. Speleman, L. Messiaen, J. Vandesompele Real-time quantitative allele discrimination assay using 3′ locked nucleic acid primers for detection of low-percentage mosaic mutations Anal Biochem 359 2006 144 146 (Pubitemid 44693514)
57. M. Collado, O. Landt, E. Barragan, U. Lass, J. Cervera, M.A. Sanz, P. Bolufer Locked nucleic acid-enhanced detection of 1100delc (*)chek2 germ-line mutation in Spanish patients with hematologic malignancies Clin Chem 50 2004 2201 2204 (Pubitemid 39425875)
58. R.P. Oldenburg, M.S. Liu, M.S. Kolodney Selective amplification of rare mutations using locked nucleic acid oligonucleotides that competitively inhibit primer binding to wild-type DNA J Invest Dermatol 128 2009 398 402
59. L.A. Ugozzoli, D. Latorra, R. Pucket, K. Arar, K. Hamby Real-time genotyping with oligonucleotide probes containing locked nucleic acids Anal Biochem 324 2004 143 152 (Pubitemid 37491135)