Identification and characterization of two functionally unknown genes involved in butanol tolerance of clostridium acetobutylicum

PLoS ONE

Volumn 7, Issue 6, 2012, Pages

  Jia, Kaizhi ^a   Zhang, Yanping ^a   Li, Yin ^a  

^a INSTITUTE OF MICROBIOLOGY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; BUTANOL; HAG PROTEIN; PYRUVATE SYNTHASE; SMB G1518 PROTEIN; SMB G1519 PROTEIN; UNCLASSIFIED DRUG;

ALCOHOL TOLERANCE; ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL STRAIN; CELL MOTILITY; CLOSTRIDIUM ACETOBUTYLICUM; CONTROLLED STUDY; FERMENTATION; GENE IDENTIFICATION; NONHUMAN; PROTEOMICS; SMB G1518 GENE; SMB G1519 GENE;

ADAPTATION, PHYSIOLOGICAL; BACTERIAL PROTEINS; BUTANOLS; CLOSTRIDIUM ACETOBUTYLICUM; FERMENTATION; GENE SILENCING; GENES, BACTERIAL; MOVEMENT; MUTATION; PROTEOMICS;

CLOSTRIDIUM ACETOBUTYLICUM;

EID: 84863087495     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0038815     Document Type: Article

References (38)

1. Isken S, de Bont JA, (1998) Bacteria tolerant to organic solvents. Extremophiles 2: 229-238.
2. Bowles LK, Ellefson WL, (1985) Effects of butanol on Clostridium acetobutylicum. Appl Environ Microbiol 50: 1165-1170.
3. Nicolaou SA, Gaida SM, Papoutsakis ET, (2010) A comparative view of metabolite and substrate stress and tolerance in microbial bioprocessing: From biofuels and chemicals, to biocatalysis and bioremediation. Metab Eng 12: 307-331.
4. Richards CD, Martin K, Gregory S, Keightley CA, Hesketh TR, et al. (1978) Degenerate perturbations of protein structure as the mechanism of anaesthetic action. Nature 276: 775-779.
5. Slater SJ, Cox KJA, Lombardi JV, Ho C, Kelly MB, et al. (1993) Inhibition of protein-kinase-c by alcohols and anesthetics. Nature 364: 82-84.
6. Ingram LO, (1986) Microbial tolerance to alcohols- role of the cell-membrane. Trends Biotechnol 4: 40-44.
7. Franks NP, Lieb WR, (1982) Molecular mechanisms of general anaesthesia. Nature 300: 487-493.
8. Das J, Zhou XJ, Miller KW, (2006) Identification of an alcohol binding site in the first cysteine-rich domain of protein kinase C delta. Protein Sci 15: 2107-2119.
9. Slater SJ, Kelly MB, Larkin JD, Ho CJ, Mazurek A, et al. (1997) Interaction of alcohols and anesthetics with protein kinase C alpha. J Biol Chem 272: 6167-6173.
10. Sengupta S, Nagaraja V, (2008) YacG from Escherichia coli is a specific endogenous inhibitor of DNA gyrase. Nucleic Acids Res 36: 4310-4316.
11. Bouhouche N, Syvanen M, Kado CI, (2000) The origin of prokaryotic C2H2 zinc finger regulators. Trends Microbiol 8: 77-81.
12. Tomas CA, Welker NE, Papoutsakis ET, (2003) Overexpression of groESL in Clostridium acetobutylicum results in increased solvent production and tolerance, prolonged metabolism, and changes in the cell's transcriptional program. Appl Environ Microbiol 69: 4951-4965.
13. Lee SY, Park JH, Jang SH, Nielsen LK, Kim J, et al. (2008) Fermentative butanol production by Clostridia. Biotechnol Bioeng 101: 209-228.
14. Ezeji TC, Karcher PM, Qureshi N, Blaschek HP, (2005) Improving performance of a gas stripping-based recovery system to remove butanol from Clostridium beijerinckii fermentation. Bioprocess Biosyst Eng 27: 207-214.
15. Shi Z, Blaschek HP, (2008) Transcriptional analysis of Clostridium beijerinckii NCIMB 8052 and the hyper-butanol-producing mutant BA101 during the shift from acidogenesis to solventogenesis. Appl Environ Microbiol 74: 7709-7714.
16. Jia KZ, Li Y, Zhang YP, (2010) Systematic engineering of microorganisms to improve alcohol tolerance. Eng Life Sci 10: 422-429.
17. Borden JR, Papoutsakis ET, (2007) Dynamics of genomic-library enrichment and identification of solvent tolerance genes for Clostridium acetobutylicum. Appl Environ Microbiol 73: 3061-3068.
18. Zhao Y, Hindorff LA, Chuang A, Monroe-Augustus M, Lyristis M, et al. (2003) Expression of a cloned cyclopropane fatty acid synthase gene reduces solvent formation in Clostridium acetobutylicum ATCC 824. Appl Environ Microbiol 69: 2831-2841.
19. Alsaker KV, Spitzer TR, Papoutsakis ET, (2004) Transcriptional analysis of spo0A overexpression in Clostridium acetobutylicum and its effect on the cell's response to butanol stress. J Bacteriol 186: 1959-1971.
20. Stahelin RV, Digman MA, Medkova M, Ananthanarayanan B, Rafter JD, et al. (2004) Mechanism of diacylglycerol-induced membrane targeting and activation of protein kinase Cdelta. J Biol Chem 279: 29501-29512.
21. Bao G, Wang R, Zhu Y, Dong H, Mao S, et al. (2011) Complete genome sequence of Clostridium acetobutylicum DSM 1731, a solvent-producing strain with multireplicon genome architecture. J Bacteriol 193: 5007-5008.
22. Jia K, Zhu Y, Zhang Y, Li Y, (2011) Group II intron-anchored gene deletion in Clostridium. PLoS One 6: e16693.
23. Tomas CA, Beamish J, Papoutsakis ET, (2004) Transcriptional analysis of butanol stress and tolerance in Clostridium acetobutylicum. J Bacteriol 186: 2006-2018.
24. Wong J, Bennett GN, (1996) Recombination-induced variants of Clostridium acetobutylicum ATCC 824 with increased solvent production. Curr Microbiol 32: 349-356.
25. Mendez M, Huang IH, Ohtani K, Grau R, Shimizu T, et al. (2008) Carbon catabolite repression of type IV pilus-dependent gliding motility in the anaerobic pathogen Clostridium perfringens. J Bacteriol 190: 48-60.
26. Ezeji TC, Qureshi N, Blaschek HP, (2007) Bioproduction of butanol from biomass: from genes to bioreactors. Curr Opin Biotechnol 18: 220-227.
27. Ezeji T, Milne C, Price ND, Blaschek HP, (2010) Achievements and perspectives to overcome the poor solvent resistance in acetone and butanol-producing microorganisms. Appl Microbiol Biotechnol 85: 1697-1712.
28. Lin YL, Blaschek HP, (1983) Butanol production by a butanol-tolerant strain of Clostridium acetobutylicum in extruded corn broth. Appl Environ Microbiol 45: 966-973.
29. Faulds-Pain A, Birchall C, Aldridge C, Smith WD, Grimaldi G, et al. (2011) Flagellin redundancy in Caulobacter crescentus and its implications for flagellar filament assembly. J Bacteriol 193: 2695-2707.
30. Tang Y, Guest JR, Artymiuk PJ, Read RC, Green J, (2004) Post-transcriptional regulation of bacterial motility by aconitase proteins. Mol Microbiol 51: 1817-1826.
31. Yakhnin H, Pandit P, Petty TJ, Baker CS, Romeo T, et al. (2007) CsrA of Bacillus subtilis regulates translation initiation of the gene encoding the flagellin protein (hag) by blocking ribosome binding. Mol Microbiol 64: 1605-1620.
32. Lai S, Tremblay J, Deziel E, (2009) Swarming motility: a multicellular behaviour conferring antimicrobial resistance. Environ Microbiol 11: 126-136.
33. Butler MT, Wang Q, Harshey RM, (2010) Cell density and mobility protect swarming bacteria against antibiotics. Proc Natl Acad Sci U S A 107: 3776-3781.
34. Diaz Ricci JC, Hernandez ME, (2000) Plasmid effects on Escherichia coli metabolism. Crit Rev Biotechnol 20: 79-108.
35. Dong H, Zhang Y, Dai Z, Li Y, (2010) Engineering Clostridium strain to accept unmethylated DNA. PLoS One 5: e9038.
36. Heap JT, Pennington OJ, Cartman ST, Carter GP, Minton NP, (2007) The ClosTron: A universal gene knock-out system for the genus Clostridium. J Microbiol Meth 70: 452-464.
37. Mermelstein LD, Welker NE, Bennett GN, Papoutsakis ET, (1992) Expression of cloned homologous fermentative genes in Clostridium acetobutylicum ATCC 824. Biotechnol (N Y) 10: 190-195.
38. Mao S, Luo Y, Zhang T, Li J, Bao G, et al. (2010) Proteome reference map and comparative proteomic analysis between a wild type Clostridium acetobutylicum DSM 1731 and its mutant with enhanced butanol tolerance and butanol yield. J Proteome Res 9: 3046-3061.