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Volumn 7, Issue 2, 2012, Pages

Mass homozygotes accumulation in the NCI-60 cancer cell lines as compared to HapMap trios, and relation to fragile site location

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CANCER CELL; CANCER CELL CULTURE; CELL CYCLE G1 PHASE; CELL CYCLE S PHASE; CHROMOSOME FRAGILE SITE; CONTROLLED STUDY; COPY NUMBER VARIATION; CYTOGENETICS; GENETIC ASSOCIATION; GENOME; HAPLOTYPE MAP; HEMIZYGOSITY; HOMOZYGOSITY; HUMAN; HUMAN CELL; NATIONAL HEALTH ORGANIZATION; NUCLEOTIDE SEQUENCE; SINGLE NUCLEOTIDE POLYMORPHISM; GENETICS; HOMOZYGOTE; HUMAN GENOME; NEOPLASM; PATHOLOGY; TUMOR CELL LINE; UNITED STATES;

EID: 84863062015     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0031628     Document Type: Article
Times cited : (14)

References (46)
  • 1
    • 0015043748 scopus 로고
    • Mutation and cancer: statistical study of retinoblastoma
    • Knudson AG, (1971) Mutation and cancer: statistical study of retinoblastoma. Proc Natl Acad Sci U S A 68: 820-823.
    • (1971) Proc Natl Acad Sci U S A , vol.68 , pp. 820-823
    • Knudson, A.G.1
  • 2
    • 0035522894 scopus 로고    scopus 로고
    • Two genetic hits (more or less) to cancer
    • Knudson AG, (2001) Two genetic hits (more or less) to cancer. Nat Rev Cancer 1: 157-162.
    • (2001) Nat Rev Cancer , vol.1 , pp. 157-162
    • Knudson, A.G.1
  • 3
    • 0022689021 scopus 로고
    • Homologous recombination in Escherichia coli: dependence on substrate length and homology
    • Shen P, Huang HV, (1986) Homologous recombination in Escherichia coli: dependence on substrate length and homology. Genetics 112: 441-457.
    • (1986) Genetics , vol.112 , pp. 441-457
    • Shen, P.1    Huang, H.V.2
  • 4
    • 34250863858 scopus 로고    scopus 로고
    • Trypanosoma brucei homologous recombination is dependent on substrate length and homology, though displays a differential dependence on mismatch repair as substrate length decreases
    • Barnes RL, McCulloch R, (2007) Trypanosoma brucei homologous recombination is dependent on substrate length and homology, though displays a differential dependence on mismatch repair as substrate length decreases. Nucleic Acids Res 35: 3478-3493.
    • (2007) Nucleic Acids Res , vol.35 , pp. 3478-3493
    • Barnes, R.L.1    McCulloch, R.2
  • 5
    • 0034975493 scopus 로고    scopus 로고
    • Mitotic recombination is suppressed by chromosomal divergence in hybrids of distantly related mouse strains
    • Shao C, Stambrook PJ, Tischfield JA, (2001) Mitotic recombination is suppressed by chromosomal divergence in hybrids of distantly related mouse strains. Nat Genet 28: 169-172.
    • (2001) Nat Genet , vol.28 , pp. 169-172
    • Shao, C.1    Stambrook, P.J.2    Tischfield, J.A.3
  • 6
    • 3442875564 scopus 로고    scopus 로고
    • Loss of heterozygosity occurs via mitotic recombination in Trp53+/- mice and associates with mammary tumor susceptibility of the BALB/c strain
    • Blackburn AC, McLary SC, Naeem R, Luszcz J, Stockton DW, et al. (2004) Loss of heterozygosity occurs via mitotic recombination in Trp53+/- mice and associates with mammary tumor susceptibility of the BALB/c strain. Cancer Res 64: 5140-5147.
    • (2004) Cancer Res , vol.64 , pp. 5140-5147
    • Blackburn, A.C.1    McLary, S.C.2    Naeem, R.3    Luszcz, J.4    Stockton, D.W.5
  • 7
    • 53549122238 scopus 로고    scopus 로고
    • RTEL1 maintains genomic stability by suppressing homologous recombination
    • Barber LJ, Youds JL, Ward JD, McIlwraith MJ, O'Neil NJ, et al. (2008) RTEL1 maintains genomic stability by suppressing homologous recombination. Cell 135: 261-271.
    • (2008) Cell , vol.135 , pp. 261-271
    • Barber, L.J.1    Youds, J.L.2    Ward, J.D.3    McIlwraith, M.J.4    O'Neil, N.J.5
  • 8
    • 77649131406 scopus 로고    scopus 로고
    • Mitotic homologous recombination maintains genomic stability and suppresses tumorigenesis
    • Moynahan ME, Jasin M, (2010) Mitotic homologous recombination maintains genomic stability and suppresses tumorigenesis. Nat Rev Mol Cell Biol 11: 196-207.
    • (2010) Nat Rev Mol Cell Biol , vol.11 , pp. 196-207
    • Moynahan, M.E.1    Jasin, M.2
  • 10
    • 59149099298 scopus 로고    scopus 로고
    • Emerging paradigms in cancer genetics: some important findings from high-density single nucleotide polymorphism array studies
    • Bacolod MD, Schemmann GS, Giardina SF, Paty P, Notterman DA, et al. (2009) Emerging paradigms in cancer genetics: some important findings from high-density single nucleotide polymorphism array studies. Cancer Res 69: 723-727.
    • (2009) Cancer Res , vol.69 , pp. 723-727
    • Bacolod, M.D.1    Schemmann, G.S.2    Giardina, S.F.3    Paty, P.4    Notterman, D.A.5
  • 11
    • 41149122075 scopus 로고    scopus 로고
    • Frequency of germline genomic homozygosity associated with cancer cases
    • Assie G, LaFramboise T, Platzer P, Eng C, (2008) Frequency of germline genomic homozygosity associated with cancer cases. JAMA 299: 1437-1445.
    • (2008) JAMA , vol.299 , pp. 1437-1445
    • Assie, G.1    LaFramboise, T.2    Platzer, P.3    Eng, C.4
  • 12
    • 12144290519 scopus 로고    scopus 로고
    • Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancers
    • Calin GA, Sevignani C, Dumitru CD, Hyslop T, Noch E, et al. (2004) Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancers. Proc Natl Acad Sci U S A 101: 2999-3004.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 2999-3004
    • Calin, G.A.1    Sevignani, C.2    Dumitru, C.D.3    Hyslop, T.4    Noch, E.5
  • 13
    • 33749011163 scopus 로고    scopus 로고
    • The NCI60 human tumour cell line anticancer drug screen
    • Shoemaker RH, (2006) The NCI60 human tumour cell line anticancer drug screen. Nat Rev Cancer 6: 813-823.
    • (2006) Nat Rev Cancer , vol.6 , pp. 813-823
    • Shoemaker, R.H.1
  • 14
    • 34147115178 scopus 로고    scopus 로고
    • Transcript and protein expression profiles of the NCI-60 cancer cell panel: an integromic microarray study
    • Shankavaram UT, Reinhold WC, Nishizuka S, Major S, Morita D, et al. (2007) Transcript and protein expression profiles of the NCI-60 cancer cell panel: an integromic microarray study. Mol Cancer Ther 6: 820-832.
    • (2007) Mol Cancer Ther , vol.6 , pp. 820-832
    • Shankavaram, U.T.1    Reinhold, W.C.2    Nishizuka, S.3    Major, S.4    Morita, D.5
  • 15
    • 78651228788 scopus 로고    scopus 로고
    • Regions of homozygosity and their impact on complex diseases and traits
    • Ku CS, Naidoo N, Teo SM, Pawitan Y, (2011) Regions of homozygosity and their impact on complex diseases and traits. Hum Genet 129: 1-15.
    • (2011) Hum Genet , vol.129 , pp. 1-15
    • Ku, C.S.1    Naidoo, N.2    Teo, S.M.3    Pawitan, Y.4
  • 16
    • 33646911907 scopus 로고    scopus 로고
    • Inferring loss-of-heterozygosity from unpaired tumors using high-density oligonucleotide SNP arrays
    • Beroukhim R, Lin M, Park Y, Hao K, Zhao X, et al. (2006) Inferring loss-of-heterozygosity from unpaired tumors using high-density oligonucleotide SNP arrays. PLoS Comput Biol 2: e41.
    • (2006) PLoS Comput Biol , vol.2
    • Beroukhim, R.1    Lin, M.2    Park, Y.3    Hao, K.4    Zhao, X.5
  • 17
    • 2342634096 scopus 로고    scopus 로고
    • DNA-Chip Analyzer (dChip)
    • In: Parmigiani Giovanni, Garrett Elizabeth, Irizarry Rafael, Zeger Scott, editors, Springer London
    • Cheng Li, Wing W, (2006) DNA-Chip Analyzer (dChip). In: Parmigiani Giovanni, Garrett Elizabeth, Irizarry Rafael, Zeger Scott, editors. The Analysis of Gene Expression Data Methods and Software Springer London pp. 120-141.
    • (2006) The Analysis of Gene Expression Data Methods and Software , pp. 120-141
    • Cheng, L.1    Wing, W.2
  • 18
    • 34548292504 scopus 로고    scopus 로고
    • PLINK: a tool set for whole-genome association and population-based linkage analyses
    • Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MA, et al. (2007) PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 81: 559-575.
    • (2007) Am J Hum Genet , vol.81 , pp. 559-575
    • Purcell, S.1    Neale, B.2    Todd-Brown, K.3    Thomas, L.4    Ferreira, M.A.5
  • 19
    • 35948984173 scopus 로고    scopus 로고
    • PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data
    • Wang K, Li M, Hadley D, Liu R, Glessner J, et al. (2007) PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data. Genome Res 17: 1665-1674.
    • (2007) Genome Res , vol.17 , pp. 1665-1674
    • Wang, K.1    Li, M.2    Hadley, D.3    Liu, R.4    Glessner, J.5
  • 21
    • 17444440946 scopus 로고    scopus 로고
    • Common chromosomal fragile site FRA16D sequence: identification of the FOR gene spanning FRA16D and homozygous deletions and translocation breakpoints in cancer cells
    • Ried K, Finnis M, Hobson L, Mangelsdorf M, Dayan S, et al. (2000) Common chromosomal fragile site FRA16D sequence: identification of the FOR gene spanning FRA16D and homozygous deletions and translocation breakpoints in cancer cells. Hum Mol Genet 9: 1651-1663.
    • (2000) Hum Mol Genet , vol.9 , pp. 1651-1663
    • Ried, K.1    Finnis, M.2    Hobson, L.3    Mangelsdorf, M.4    Dayan, S.5
  • 23
    • 0032889647 scopus 로고    scopus 로고
    • Frequent deletions within FRA7G at 7q31.2 in invasive epithelial ovarian cancer
    • Huang H, Reed CP, Mordi A, Lomberk G, Wang L, et al. (1999) Frequent deletions within FRA7G at 7q31.2 in invasive epithelial ovarian cancer. Genes Chromosomes Cancer 24: 48-55.
    • (1999) Genes Chromosomes Cancer , vol.24 , pp. 48-55
    • Huang, H.1    Reed, C.P.2    Mordi, A.3    Lomberk, G.4    Wang, L.5
  • 24
    • 0033559942 scopus 로고    scopus 로고
    • Loss of heterozygosity at 3p14.2 in clear cell renal cell carcinoma is an early event and is highly localized to the FHIT gene locus
    • Velickovic M, Delahunt B, Grebe SK, (1999) Loss of heterozygosity at 3p14.2 in clear cell renal cell carcinoma is an early event and is highly localized to the FHIT gene locus. Cancer Res 59: 1323-1326.
    • (1999) Cancer Res , vol.59 , pp. 1323-1326
    • Velickovic, M.1    Delahunt, B.2    Grebe, S.K.3
  • 25
    • 0042522482 scopus 로고    scopus 로고
    • Characterization of FRA6E and its potential role in autosomal recessive juvenile parkinsonism and ovarian cancer
    • Denison SR, Callahan G, Becker NA, Phillips LA, Smith DI, (2003) Characterization of FRA6E and its potential role in autosomal recessive juvenile parkinsonism and ovarian cancer. Genes Chromosomes Cancer 38: 40-52.
    • (2003) Genes Chromosomes Cancer , vol.38 , pp. 40-52
    • Denison, S.R.1    Callahan, G.2    Becker, N.A.3    Phillips, L.A.4    Smith, D.I.5
  • 27
    • 77950651133 scopus 로고    scopus 로고
    • High-resolution DNA analysis of human embryonic stem cell lines reveals culture-induced copy number changes and loss of heterozygosity
    • Narva E, Autio R, Rahkonen N, Kong L, Harrison N, et al. (2010) High-resolution DNA analysis of human embryonic stem cell lines reveals culture-induced copy number changes and loss of heterozygosity. Nat Biotechnol 28: 371-377.
    • (2010) Nat Biotechnol , vol.28 , pp. 371-377
    • Narva, E.1    Autio, R.2    Rahkonen, N.3    Kong, L.4    Harrison, N.5
  • 28
    • 38949110294 scopus 로고    scopus 로고
    • Does age influence loss of heterozygosity?
    • Carr LL, Gottschling DE, (2008) Does age influence loss of heterozygosity? Exp Gerontol 43: 123-29.
    • (2008) Exp Gerontol , vol.43 , pp. 123-129
    • Carr, L.L.1    Gottschling, D.E.2
  • 30
    • 0036131979 scopus 로고    scopus 로고
    • Molecular characterization of FRAXB and comparative common fragile site instability in cancer cells
    • Arlt MF, Miller DE, Beer DG, Glover TW, (2002) Molecular characterization of FRAXB and comparative common fragile site instability in cancer cells. Genes Chromosomes Cancer 33: 82-92.
    • (2002) Genes Chromosomes Cancer , vol.33 , pp. 82-92
    • Arlt, M.F.1    Miller, D.E.2    Beer, D.G.3    Glover, T.W.4
  • 31
    • 0037294118 scopus 로고    scopus 로고
    • Characterization of the human common fragile site FRA2G
    • Limongi MZ, Pelliccia F, Rocchi A, (2003) Characterization of the human common fragile site FRA2G. Genomics 81: 93-97.
    • (2003) Genomics , vol.81 , pp. 93-97
    • Limongi, M.Z.1    Pelliccia, F.2    Rocchi, A.3
  • 32
    • 0141864371 scopus 로고    scopus 로고
    • Molecular basis for expression of common and rare fragile sites
    • Zlotorynski E, Rahat A, Skaug J, Ben-Porat N, Ozeri E, et al. (2003) Molecular basis for expression of common and rare fragile sites. Mol Cell Biol 23: 7143-7151.
    • (2003) Mol Cell Biol , vol.23 , pp. 7143-7151
    • Zlotorynski, E.1    Rahat, A.2    Skaug, J.3    Ben-Porat, N.4    Ozeri, E.5
  • 33
    • 28444472417 scopus 로고    scopus 로고
    • The great escape: when cancer cells hijack the genes for chemotaxis and motility
    • Condeelis J, Singer RH, Segall JE, (2005) The great escape: when cancer cells hijack the genes for chemotaxis and motility. Annu Rev Cell Dev Biol 21: 695-718.
    • (2005) Annu Rev Cell Dev Biol , vol.21 , pp. 695-718
    • Condeelis, J.1    Singer, R.H.2    Segall, J.E.3
  • 34
    • 4944229701 scopus 로고    scopus 로고
    • A paracrine loop between tumor cells and macrophages is required for tumor cell migration in mammary tumors
    • Wyckoff J, Wang W, Lin EY, Wang Y, Pixley F, et al. (2004) A paracrine loop between tumor cells and macrophages is required for tumor cell migration in mammary tumors. Cancer Res 64: 7022-7029.
    • (2004) Cancer Res , vol.64 , pp. 7022-7029
    • Wyckoff, J.1    Wang, W.2    Lin, E.Y.3    Wang, Y.4    Pixley, F.5
  • 35
    • 0034194578 scopus 로고    scopus 로고
    • A critical step in metastasis: in vivo analysis of intravasation at the primary tumor
    • Wyckoff JB, Jones JG, Condeelis JS, Segall JE, (2000) A critical step in metastasis: in vivo analysis of intravasation at the primary tumor. Cancer Res 60: 2504-2511.
    • (2000) Cancer Res , vol.60 , pp. 2504-2511
    • Wyckoff, J.B.1    Jones, J.G.2    Condeelis, J.S.3    Segall, J.E.4
  • 36
    • 77955640339 scopus 로고    scopus 로고
    • Inactivation of chemokine (C-C motif) receptor 1 (CCR1) suppresses colon cancer liver metastasis by blocking accumulation of immature myeloid cells in a mouse model
    • Kitamura T, Fujishita T, Loetscher P, Revesz L, Hashida H, et al. (2010) Inactivation of chemokine (C-C motif) receptor 1 (CCR1) suppresses colon cancer liver metastasis by blocking accumulation of immature myeloid cells in a mouse model. Proc Natl Acad Sci U S A 107: 13063-68.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 13063-13068
    • Kitamura, T.1    Fujishita, T.2    Loetscher, P.3    Revesz, L.4    Hashida, H.5
  • 37
    • 34247855834 scopus 로고    scopus 로고
    • CCR2 expression correlates with prostate cancer progression
    • Lu Y, Cai Z, Xiao G, Liu Y, Keller ET, et al. (2007) CCR2 expression correlates with prostate cancer progression. J Cell Biochem 101: 676-685.
    • (2007) J Cell Biochem , vol.101 , pp. 676-685
    • Lu, Y.1    Cai, Z.2    Xiao, G.3    Liu, Y.4    Keller, E.T.5
  • 38
    • 20244381116 scopus 로고    scopus 로고
    • Up-regulation of functional chemokine receptor CCR3 in human renal cell carcinoma
    • Johrer K, Zelle-Rieser C, Perathoner A, Moser P, Hager M, et al. (2005) Up-regulation of functional chemokine receptor CCR3 in human renal cell carcinoma. Clin Cancer Res 11: 2459-2465.
    • (2005) Clin Cancer Res , vol.11 , pp. 2459-2465
    • Johrer, K.1    Zelle-Rieser, C.2    Perathoner, A.3    Moser, P.4    Hager, M.5
  • 39
    • 17744406409 scopus 로고    scopus 로고
    • Epithelial-neutrophil activating peptide (ENA-78) is an important angiogenic factor in non-small cell lung cancer
    • Arenberg DA, Keane MP, DiGiovine B, Kunkel SL, Morris SB, et al. (1998) Epithelial-neutrophil activating peptide (ENA-78) is an important angiogenic factor in non-small cell lung cancer. J Clin Invest 102: 465-472.
    • (1998) J Clin Invest , vol.102 , pp. 465-472
    • Arenberg, D.A.1    Keane, M.P.2    DiGiovine, B.3    Kunkel, S.L.4    Morris, S.B.5
  • 40
    • 33846474121 scopus 로고    scopus 로고
    • G-protein-coupled receptors and cancer
    • Dorsam RT, Gutkind JS, (2007) G-protein-coupled receptors and cancer. Nat Rev Cancer 7: 79-94.
    • (2007) Nat Rev Cancer , vol.7 , pp. 79-94
    • Dorsam, R.T.1    Gutkind, J.S.2
  • 41
    • 66449112610 scopus 로고    scopus 로고
    • Identification of GRO1 as a critical determinant for mutant p53 gain of function
    • Yan W, Chen X, (2009) Identification of GRO1 as a critical determinant for mutant p53 gain of function. J Biol Chem 284: 12178-12187.
    • (2009) J Biol Chem , vol.284 , pp. 12178-12187
    • Yan, W.1    Chen, X.2
  • 42
    • 77953288700 scopus 로고    scopus 로고
    • Differential expression of the chemokines GRO-2, GRO-3, and interleukin-8 in colon cancer and their impact on metastatic disease and survival
    • Doll D, Keller L, Maak M, Boulesteix AL, Siewert JR, et al. (2010) Differential expression of the chemokines GRO-2, GRO-3, and interleukin-8 in colon cancer and their impact on metastatic disease and survival. Int J Colorectal Dis 25: 573-581.
    • (2010) Int J Colorectal Dis , vol.25 , pp. 573-581
    • Doll, D.1    Keller, L.2    Maak, M.3    Boulesteix, A.L.4    Siewert, J.R.5
  • 43
    • 34249781407 scopus 로고    scopus 로고
    • Expression of IP-10 related to angiogenesis in uterine cervical cancers
    • Sato E, Fujimoto J, Toyoki H, Sakaguchi H, Alam SM, et al. (2007) Expression of IP-10 related to angiogenesis in uterine cervical cancers. Br J Cancer 96: 1735-1739.
    • (2007) Br J Cancer , vol.96 , pp. 1735-1739
    • Sato, E.1    Fujimoto, J.2    Toyoki, H.3    Sakaguchi, H.4    Alam, S.M.5
  • 44
    • 33644807285 scopus 로고    scopus 로고
    • The role of interleukin-8 in cancer cells and microenvironment interaction
    • Yuan A, Chen JJ, Yao PL, Yang PC, (2005) The role of interleukin-8 in cancer cells and microenvironment interaction. Front Biosci 10: 853-865.
    • (2005) Front Biosci , vol.10 , pp. 853-865
    • Yuan, A.1    Chen, J.J.2    Yao, P.L.3    Yang, P.C.4
  • 45
    • 41549099650 scopus 로고    scopus 로고
    • Detection and identification of NAP-2 as a biomarker in hepatitis B-related hepatocellular carcinoma by proteomic approach
    • He M, Qin J, Zhai R, Wei X, Wang Q, et al. (2008) Detection and identification of NAP-2 as a biomarker in hepatitis B-related hepatocellular carcinoma by proteomic approach. Proteome Sci 6: 10.
    • (2008) Proteome Sci , vol.6 , pp. 10
    • He, M.1    Qin, J.2    Zhai, R.3    Wei, X.4    Wang, Q.5
  • 46
    • 38949086547 scopus 로고    scopus 로고
    • Platelet-associated PF-4 as a biomarker of early tumor growth
    • Cervi D, Yip TT, Bhattacharya N, Podust VN, Peterson J, et al. (2008) Platelet-associated PF-4 as a biomarker of early tumor growth. Blood 111: 1201-1207.
    • (2008) Blood , vol.111 , pp. 1201-1207
    • Cervi, D.1    Yip, T.T.2    Bhattacharya, N.3    Podust, V.N.4    Peterson, J.5


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