SUMA

NeuroImage

Volumn 62, Issue 2, 2012, Pages 768-773

  Saad, Ziad S ^a   Reynolds, Richard C ^a  

^a NATIONAL INSTITUTE OF MENTAL HEALTH   (United States)

Author keywords

Cortical surface models; Cortical thickness; FMRI retinotopy; Interactive FMRI resting state analysis; Surface ROI drawing; Surface based group analysis; Surface based smoothing

Indexed keywords

BRAIN MAPPING; BRAIN SIZE; COMPUTER INTERFACE; COMPUTER PROGRAM; CORTICAL THICKNESS; FUNCTIONAL MAGNETIC RESONANCE IMAGING; HUMAN; IMAGE ANALYSIS; NEUROIMAGING; NUCLEAR MAGNETIC RESONANCE IMAGING; PRIORITY JOURNAL; RETROSPECTIVE STUDY; REVIEW; STANDARDIZATION; STATISTICAL ANALYSIS; THICKNESS;

BRAIN MAPPING; CEREBRAL CORTEX; HISTORY, 20TH CENTURY; HISTORY, 21ST CENTURY; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; MAGNETIC RESONANCE IMAGING; SOFTWARE;

EID: 84862982840     PISSN: 10538119     EISSN: 10959572     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2011.09.016     Document Type: Review

References (19)

1. Anticevic A., Dierker D.L., Gillespie S.K., Repovs G., Csernansky J.G., Van Essen D.C., Barch D.M. Comparing surface-based and volume-based analyses of functional neuroimaging data in patients with schizophrenia. NeuroImage 2008, 41:835-848.
2. Argall B.D., Saad Z.S., Beauchamp M.S. Simplified intersubject averaging on the cortical surface using SUMA. Hum. Brain Mapp. 2006, 27:14-27.
3. Ashburner J. A fast diffeomorphic image registration algorithm. NeuroImage 2007, 38:95-113.
4. Biswal B.B., Mennes M., Zuo X.N., Gohel S., Kelly C., Smith S.M., Beckmann C.F., Adelstein J.S., Buckner R.L., Colcombe S., Dogonowski A.M., Ernst M., Fair D., Hampson M., Hoptman M.J., Hyde J.S., Kiviniemi V.J., Kotter R., Li S.J., Lin C.P., Lowe M.J., Mackay C., Madden D.J., Madsen K.H., Margulies D.S., Mayberg H.S., McMahon K., Monk C.S., Mostofsky S.H., Nagel B.J., Pekar J.J., Peltier S.J., Petersen S.E., Riedl V., Rombouts S.A., Rypma B., Schlaggar B.L., Schmidt S., Seidler R.D., Siegle G.J., Sorg C., Teng G.J., Veijola J., Villringer A., Walter M., Wang L., Weng X.C., Whitfield-Gabrieli S., Williamson P., Windischberger C., Zang Y.F., Zhang H.Y., Castellanos F.X., Milham M.P. Toward discovery science of human brain function. Proc Natl Acad Sci U S A 2010, 107:4734-4739.
5. Cheyne D., Bakhtazad L., Gaetz W. Spatiotemporal mapping of cortical activity accompanying voluntary movements using an event-related beamforming approach. Hum. Brain Mapp. 2006, 27:213-229.
6. Cohen A.L., Fair D.A., Dosenbach N.U., Miezin F.M., Dierker D., Van Essen D.C., Schlaggar B.L., Petersen S.E. Defining functional areas in individual human brains using resting functional connectivity MRI. NeuroImage 2008, 41:45-57.
7. Cox R.W. AFNI: software for analysis and visualization of functional magnetic resonance neuroimages. Comput. Biomed. Res. 1996, 29:162-173.
8. Dale A.M., Fischl B., Sereno M.I. Cortical surface-based analysis. I. Segmentation and surface reconstruction. NeuroImage 1999, 9:179-194.
9. Fischl B., Sereno M.I., Dale A.M. Cortical surface-based analysis. II: inflation, flattening, and a surface-based coordinate system. NeuroImage 1999, 9:195-207.
10. Fischl B., Sereno M.I., Tootell R.B., Dale A.M. High-resolution intersubject averaging and a coordinate system for the cortical surface. Hum. Brain Mapp. 1999, 8:272-284.
11. Hagler D.J., Saygin A.P., Sereno M.I. Smoothing and cluster thresholding for cortical surface-based group analysis of fMRI data. NeuroImage 2006, 33:1093-1103.
12. Jack C.R., Bernstein M.A., Fox N.C., Thompson P., Alexander G., Harvey D., Borowski B., Britson P.J., J, L.W., Ward C., Dale A.M., Felmlee J.P., Gunter J.L., Hill D.L., Killiany R., Schuff N., Fox-Bosetti S., Lin C., Studholme C., DeCarli C.S., Krueger G., Ward H.A., Metzger G.J., Scott K.T., Mallozzi R., Blezek D., Levy J., Debbins J.P., Fleisher A.S., Albert M., Green R., Bartzokis G., Glover G., Mugler J., Weiner M.W. The Alzheimer's Disease Neuroimaging Initiative (ADNI): MRI methods. J. Magn. Reson. Imaging 2008, 27:685-691.
13. Jo H.J., Saad Z.S., Gotts S.J., Glen D.R., Martin A., Cox R.W. Quantifying contralateral resting-state homology across the whole cortex. Organization for Human Brain Mapping, Quebec City, Canada 2011.
14. Klein A., Andersson J., Ardekani B.A., Ashburner J., Avants B., Chiang M.C., Christensen G.E., Collins D.L., Gee J., Hellier P., Song J.H., Jenkinson M., Lepage C., Rueckert D., Thompson P., Vercauteren T., Woods R.P., Mann J.J., Parsey R.V. Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. NeuroImage 2009, 46:786-802.
15. Mueller S.G., Weiner M.W., Thal L.J., Petersen R.C., Jack C.R., Jagust W., Trojanowski J.Q., Toga A.W., Beckett L. Ways toward an early diagnosis in Alzheimer's disease: the Alzheimer's Disease Neuroimaging Initiative (ADNI). Alzheimers Dement. 2005, 1:55-66.
16. Saad Z.S., Reynolds R.C., Argall B., Japee S., Cox R.W. SUMA: an interface for surface-based intra- and inter-subject analysis with AFNI. 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro. IEEE, Arlington, VA 2004, 1510-1513.
17. Van Essen D.C., Maunsell J.H.R. Two dimensional maps of the cerebral cortex. J. Comp. Neurol. 1980, 191:255-281.
18. Van Essen D.C., Drury H.A., Dickson J., Harwell J., Hanlon D., Anderson C.H. An integrated software suite for surface-based analyses of cerebral cortex.[comment]. J. Am. Med. Inform. Assoc. 2001, 8:443-459.
19. Warnking J., Dojat M., Guerin-Dugue A., Delon-Martin C., Olympieff S., Richard N., Chehikian A., Segebarth C. fMRI retinotopic mapping-step by step. NeuroImage 2002, 17:1665-1683.