Isolation and characterization of microsatellite loci from Pinus massoniana (pinaceae)

Botanical Studies

Volumn 53, Issue 2, 2012, Pages 191-196

  Hung, Kuo Hsiang ^a   Lin, Chi Yung ^b   Huang, Chi Chun ^b   Hwang, Chi Chuan ^b   Hsu, Tsai Wen ^c   Kuo, Yau Lun ^a   Wang, Wei Kuang ^b   Hung, Cheng Yu ^b   Chiang, Tzen Yuh ^b  

^a NATIONAL PINGTUNG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Taiwan)

^b NATIONAL CHENG KUNG UNIVERSITY   (Taiwan)

^c ENDEMIC SPECIES RESEARCH INSTITUTE   (Taiwan)

Author keywords

Heterozygosity; Microsatellite; Pinaceae; Pinus massoniana; Population structure

Indexed keywords

PINACEAE; PINUS MASSONIANA;

EID: 84862846127     PISSN: 1817406X     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (30)

1. Chiang, T.Y. and B.A. Schaal. 2006. Phylogeography of plants in Taiwan and the Ryukyu Archipelago. Taxon 55: 3-41.
2. Chiang, Y.C., K.H. Hung, B.A. Schaal, X.J. Ge, T.W. Hsu, and T.Y. Chiang. 2006. Contrasting phylogeographical patterns between mainland and island taxa of the Pinus luchensis complex. Mol. Ecol. 15: 765-779.
3. Chiang, T. Y. 2008. Genetic structure study of Pinus massoniana of Miaoli Sanyi Huoyanshan Nature Reserve. Forestry Bureau, Council of Agriculture Executive Yuan, Taiwan. (in Chinese).
4. Chiang, Y.C., K.H. Hung, S.J. Moore, X.J. Ge, S. Huang, T.W. Hsu, B.A. Schaal, and T.Y. Chiang. 2009. Paraphyly of organelle DNAs in Cycas sect. Asiorientales due to ancient ancestral polymorphisms. BMC Evol. Biol. 9: 161.
5. Doyle, J.J., and J.L. Doyle. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19: 11-15.
6. Echt, C.S., P. May-Marquardt, M. Hseih, and R. Zahorchak. 1996. Characterization of microsatellite markers in eastern white pine. Genome 39: 1102-1108.
7. Ellegren, H. 2004. Microsatellites: simple sequences with complex evolution. Nat. Rev. Genet. 5: 435-445.
8. Excoffier, L., G. Laval, and S. Schneider. 2005. Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1: 47-50.
9. Freville, H., F. Justy, and I. Olivieri. 2001. Comparative allozyme and microsatellite population structure in a narrow endemic plant species, Centaurea corymbosa Pourret (Asteraceae). Mol. Ecol. 10: 879-889.
10. Guan, L., Suharyanto, and S. Shiraishi. 2011. Isolation and characterization of tetranucleotide microsatellite loci in Pinus massoniana (Pinaceae). Am. J. Bot. 98: e216-e217.
11. Hamrick, J.L. and M.J.W. Godt. 1989. Allozyme diversity in plant species. In A.H.D. Brown, M.T. Clegg, A.L. Kahler, and B.S. Weir (eds.), Plant Population Genetics, Breeding and Genetic Resources, Sinauer, Sunderland, MA, pp. 43-63.
12. Huang, Q.Q. and Y.X. Zhang. 2000. Study on the genetic structure in Pinus massoniana (Masson pine) populations. Silvae Genet. 49: 190-195.
13. Huang, S., Y.C. Chiang, B.A. Schaal, C.H. Chou, and T.Y. Chiang. 2001. Organelle DNA phylogeography of Cycas taitungensis, a relict species in Taiwan. Mol. Ecol. 10: 2669-2681.
14. Huang, Y.Y. 2009. The distribution and classification of pine wood nematode (Bursaphelenchus spp.) in Taiwan. National Chung Hsing University, Taiwan. (in Chinese).
15. Lunt, D.H., W.F. Hutchinson, and G.R. Carvalho. 1999. An efficient method for PCR-based isolation of microsatellite arrays (PIMA). Mol. Ecol. 8: 891-893.
16. Mariette, S., D. Chagné, C. Lézier, P. Pastuszka, A. Raffin, C. Plomion, and A. Kremer. 2001. Genetic diversity within and among Pinus pinaster populations: comparison between AFLP and microsatellite markers. Heredity 8: 469-479.
17. Morgante, M. and A.M. Olivieri. 1993. PCR-amplified microsatellites as markers in plant genetics. The Plant J. 3: 175-182.
18. Peng, S.L., Q.F. Li, D. Li, Z.F. Wang, and D.P. Wang. 2003. Genetic diversity of Pinus massoniana revealed by RAPD markers. Silvae Genet. 52: 60-63.
19. Raymond, M. and F. Rous set. 1995. GENEPOP (Version 1.2) Population genetics software for exact tests and ecumenicism. J. Hered. 86: 248-249. (http://genepop.curtin.edu.au/).
20. Rice, W.R. 1989. Analyzing tables of statistical tests. Evolution 43: 223-225.
21. Richardson, D.M. and P.W. Rundel. 1998. Ecology and biogeography of Pinus: an introduction. In D.M. Richardson (ed.), Ecology and biogeography of Pinus. Cambridge University Press, Cambridge, UK, pp. 3-46.
22. Rozen, S. and H.J. Skaletsky. 2000. Primer3 on the WWW for general users and for biologist programmers. In S. Krawetz and S. Misener (eds.), Bioinformatics methods and protocols: methods in molecular biology. Humana Press, Totowa, NJ, pp. 365-386.
23. Roy, C.B., M.A. Nazeer, and T. Saha. 2004. Identification of simple sequence repeats in rubber (Hevea brasiliensis). Curr. Sci. 87: 807-811.
24. Smith, D.N. and M.E. Devey. 1994. Occurrence and inheritance of microsatellites in Pinus radiata. Genome 37: 977-983.
25. Soranzo, N., J. Provan, and W. Powell. 1998. Characterization of microsatellite loci in Pinus sylvestris L. Mol. Ecol. 7: 1247-1263.
26. Straub, S.C. and J.J. Doyle. 2009. Conservation genetics of Amorpha georgiana (Fabaceae), an endangered legume of the Southeastern United States. Mol. Ecol. 18: 4349-4365.
27. Van Oppen, M.J., C. Rico, G.F. Turner, and G.M. Hewitt. 2000. Extensive homoplasy, nonstepwise mutations, and shared ancestral polymorphism at a complex microsatellite locus in Lake Malawi cichlids. Mol. Biol. Evol. 17: 489-498.
28. Van Oosterhout, C., W.F. Hutchinson, D.P.M Wills, and P. Shipley. 2004. Micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4: 535-538.
29. Vaughan, V. and A.M. Lloyd. 2003. An analysis of microsatellite loci in Arabidopsis thaliana: mutational dynamics and application. Genetics 165: 1475-1488.
30. Zhou, Y.F., R.J. Abbott, Z.Y. Jiang, F.K. Du, R.I. Milne, and J.Q. Liu. 2010. Gene flow and species delimitation: a case study of two pine species with overlapping distributions in southeast China. Evolution 64: 2342-2352.