Integrated analysis of mRNA and microRNA expression in mature neurons, neural progenitor cells and neuroblastoma cells

Gene

Volumn 495, Issue 2, 2012, Pages 120-127

  Liu, Da Zhi ^a   Ander, Bradley P ^a   Tian, Yingfang ^a   Stamova, Boryana ^a   Jickling, Glen C ^a   Davis, Ryan R ^b   Sharp, Frank R ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Mature neurons (MNs); MicroRNA (miRNA); MRNA; Neural progenitor cells (NPCs); Neuroblastoma cells (NBCs)

Indexed keywords

MESSENGER RNA; MICRORNA;

ANIMAL CELL; ARTICLE; CELL DIFFERENTIATION; CELL DIVISION; CONTROLLED STUDY; GENE EXPRESSION; MATURE NEURON; MITOGENESIS; NERVE CELL; NEURAL PROGENITOR CELL; NEUROBLASTOMA CELL; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RAT; RNA ANALYSIS; STEM CELL;

ANIMALS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; MICRORNAS; NERVE TISSUE PROTEINS; NEURAL STEM CELLS; NEUROBLASTOMA; NEURONS; RATS; RNA, MESSENGER;

EID: 84862832239     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2011.12.041     Document Type: Article

References (39)

1. Bao H., Jiang M., Zhu M., Sheng F., Ruan J., Ruan C. Overexpression of Annexin II affects the proliferation, apoptosis, invasion and production of proangiogenic factors in multiple myeloma. Int. J. Hematol. 2009, 90:177-185.
2. Bartel D.P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116:281-297.
3. Bartel D.P. MicroRNAs: target recognition and regulatory functions. Cell 2009, 136:215-233.
4. Bartkova J., Zemanova M., Bartek J. Expression of CDK7/CAK in normal and tumor cells of diverse histogenesis, cell-cycle position and differentiation. Int. J. Cancer 1996, 66:732-737.
5. Chedotal A., Kerjan G., Moreau-Fauvarque C. The brain within the tumor: new roles for axon guidance molecules in cancers. Cell Death Differ. 2005, 12:1044-1056.
6. Copani A., Condorelli F., Caruso A., Vancheri C., Sala A., Giuffrida Stella A.M., et al. Mitotic signaling by beta-amyloid causes neuronal death. FASEB J. 1999, 13:2225-2234.
7. Croslan D.R., Schoell M.C., Ford G.D., Pulliam J.V., Gates A., Clement C.M., et al. Neuroprotective effects of neuregulin-1 on B35 neuronal cells following ischemia. Brain Res. 2008, 1210:39-47.
8. Dallol A., Morton D., Maher E.R., Latif F. SLIT2 axon guidance molecule is frequently inactivated in colorectal cancer and suppresses growth of colorectal carcinoma cells. Cancer Res. 2003, 63:1054-1058.
9. Das S., Shetty P., Valapala M., Dasgupta S., Gryczynski Z., Vishwanatha J.K. Signal transducer and activator of transcription 6 (STAT6) is a novel interactor of annexin A2 in prostate cancer cells. Biochemistry 2010, 49:2216-2226.
10. Duval N., Gomes D., Calaora V., Calabrese A., Meda P., Bruzzone R. Cell coupling and Cx43 expression in embryonic mouse neural progenitor cells. J. Cell Sci. 2002, 115:3241-3251.
11. Friedman R.C., Farh K.K., Burge C.B., Bartel D.P. Most mammalian mRNAs are conserved targets of microRNAs. Genome Res. 2009, 19:92-105.
12. Furne C., Rama N., Corset V., Chedotal A., Mehlen P. Netrin-1 is a survival factor during commissural neuron navigation. Proc. Natl. Acad. Sci. U. S. A. 2008, 105:14465-14470.
13. Geschwind D.H., Ou J., Easterday M.C., Dougherty J.D., Jackson R.L., Chen Z., et al. A genetic analysis of neural progenitor differentiation. Neuron 2001, 29:325-339.
14. Groszer M., Erickson R., Scripture-Adams D.D., Lesche R., Trumpp A., Zack J.A., et al. Negative regulation of neural stem/progenitor cell proliferation by the Pten tumor suppressor gene in vivo. Science 2001, 294:2186-2189.
15. Herrup K., Neve R., Ackerman S.L., Copani A. Divide and die: cell cycle events as triggers of nerve cell death. J. Neurosci. 2004, 24:9232-9239.
16. Ishikawa M., Ogihara Y., Miura M. Visualization of radiation-induced cell cycle-associated events in tumor cells expressing the fusion protein of Azami Green and the destruction box of human Geminin. Biochem. Biophys. Res. Commun. 2009.
17. Jakymiw A., Pauley K.M., Li S., Ikeda K., Lian S., Eystathioy T., et al. The role of GW/P-bodies in RNA processing and silencing. J. Cell Sci. 2007, 120:1317-1323.
18. Ji N.Y., Park M.Y., Kang Y.H., Lee C.I., Kim D.G., Yeom Y.I., et al. Evaluation of annexin II as a potential serum marker for hepatocellular carcinoma using a developed sandwich ELISA method. Int. J. Mol. Med. 2009, 24:765-771.
19. Kim D.M., Noh H.B., Park D.S., Ryu S.H., Koo J.S., Shim Y.B. Immunosensors for detection of Annexin II and MUC5AC for early diagnosis of lung cancer. Biosens. Bioelectron. 2009, 25:456-462.
20. Li L.C., Okino S.T., Zhao H., Pookot D., Place R.F., Urakami S., et al. Small dsRNAs induce transcriptional activation in human cells. Proc. Natl. Acad. Sci. U. S. A. 2006, 103:17337-17342.
21. Lim L.P., Lau N.C., Garrett-Engele P., Grimson A., Schelter J.M., Castle J., et al. Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 2005, 433:769-773.
22. Lin L., Isacson O. Axonal growth regulation of fetal and embryonic stem cell-derived dopaminergic neurons by Netrin-1 and Slits. Stem Cells 2006, 24:2504-2513.
23. Liu D.Z., Cheng X.Y., Ander B.P., Xu H., Davis R.R., Gregg J.P., et al. Src kinase inhibition decreases thrombin-induced injury and cell cycle re-entry in striatal neurons. Neurobiol. Dis. 2008, 30:201-211.
24. Liu D.Z., Ander B.P., Sharp F.R. Cell cycle inhibition without disruption of neurogenesis is a strategy for treatment of central nervous system diseases. Neurobiol. Dis. 2010, 37:549-557.
25. Lyons D.A., Guy A.T., Clarke J.D. Monitoring neural progenitor fate through multiple rounds of division in an intact vertebrate brain. Development 2003, 130:3427-3436.
26. Mao Q., Li Y., Zheng X., Yang K., Shen H., Qin J., et al. Up-regulation of E-cadherin by small activating RNA inhibits cell invasion and migration in 5637 human bladder cancer cells. Biochem. Biophys. Res. Commun. 2008, 375:566-570.
27. McClelland L., Chen Y., Soong J., Kuo I., Scott G. Plexin B1 inhibits integrin-dependent pp125(FAK) and Rho activity in melanoma. Pigment Cell Melanoma Res. 2010.
28. Miyamoto Y., Futamura M., Kitamura N., Nakamura Y., Baba H., Arakawa H. Identification of UNC5A as a novel transcriptional target of tumor suppressor p53 and a regulator of apoptosis. Int. J. Oncol. 2010, 36:1253-1260.
29. Narayan G., Goparaju C., Arias-Pulido H., Kaufmann A.M., Schneider A., Durst M., et al. Promoter hypermethylation-mediated inactivation of multiple Slit-Robo pathway genes in cervical cancer progression. Mol. Cancer 2006, 5:16.
30. Place R.F., Li L.C., Pookot D., Noonan E.J., Dahiya R. MicroRNA-373 induces expression of genes with complementary promoter sequences. Proc. Natl. Acad. Sci. U. S. A. 2008, 105:1608-1613.
31. Reubinoff B.E., Itsykson P., Turetsky T., Pera M.F., Reinhartz E., Itzik A., et al. Neural progenitors from human embryonic stem cells. Nat. Biotechnol. 2001, 19:1134-1140.
32. Sarachana T., Zhou R., Chen G., Manji H.K., Hu V.W. Investigation of post-transcriptional gene regulatory networks associated with autism spectrum disorders by microRNA expression profiling of lymphoblastoid cell lines. Genome Med. 2010, 2:23.
33. Schmittgen T.D., Lee E.J., Jiang J., Sarkar A., Yang L., Elton T.S., et al. Real-time PCR quantification of precursor and mature microRNA. Methods 2008, 44:31-38.
34. Singh R.K., Indra D., Mitra S., Mondal R.K., Basu P.S., Roy A., et al. Deletions in chromosome 4 differentially associated with the development of cervical cancer: evidence of slit2 as a candidate tumor suppressor gene. Hum. Genet. 2007, 122:71-81.
35. Smith P.J., Marquez N., Wiltshire M., Chappell S., Njoh K., Campbell L., et al. Mitotic bypass via an occult cell cycle phase following DNA topoisomerase II inhibition in p53 functional human tumor cells. Cell Cycle 2007, 6:2071-2081.
36. Suzuki K., Kelleher A.D. Transcriptional regulation by promoter targeted RNAs. Curr. Top. Med. Chem. 2009, 9:1079-1087.
37. Wu L., Fan J., Belasco J.G. MicroRNAs direct rapid deadenylation of mRNA. Proc. Natl. Acad. Sci. U. S. A. 2006, 103:4034-4039.
38. Yuasa-Kawada J., Kinoshita-Kawada M., Wu G., Rao Y., Wu J.Y. Midline crossing and Slit responsiveness of commissural axons require USP33. Nat. Neurosci. 2009, 12:1087-1089.
39. Zhang F., Zhang L., Zhang B., Wei X., Yang Y., Qi R.Z., et al. Anxa2 plays a critical role in enhanced invasiveness of the multidrug resistant human breast cancer cells. J. Proteome Res. 2009, 8:5041-5047.