Assessment of population genetic diversity of Fagopyrum tataricum using SSR molecular marker

Biochemical Systematics and Ecology

Volumn 43, Issue , 2012, Pages 32-41

  Kishore, Garima ^a   Gupta, Sanjay ^b   Pandey, Anjana ^a  

^a UNIVERSITY OF ALLAHABAD   (India)

^b Sardar Bhagwan Singh Post Gratudate Institute of Biomedical Sciences & Research   (India)

Author keywords

Fagopyrum tataricum; Genetic diversity; Population differentiation; SSR

Indexed keywords

ASSESSMENT METHOD; CONSERVATION GENETICS; GENE FLOW; GENETIC DIFFERENTIATION; GENETIC MARKER; HERB; MOLECULAR ANALYSIS; POLYMORPHISM; POPULATION STRUCTURE;

FAGOPYRUM; FAGOPYRUM TATARICUM;

EID: 84862829601     PISSN: 03051978     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bse.2012.02.018     Document Type: Article

References (45)

1. Alekseeva E.S. Selection, cultivation and utilization of buckwheat. Proceedings of the 9th International Symposium on Buckwheat, Pulawy, Poland 1986, 7-12. July 1986.
2. Anderson J.A., Churchill G.A., Autrique J.E., Sorells M.E., Tanksley S.D. Optimizing parental selection for genetic-linkage maps. Genome 1993, 36:181-186.
3. Christiansen M.J., Andersen S.B., Oritiz R. Diversity changes in an intensively bred wheat germplasm during the 20th century. Mol. Breed. 2002, 9:1-11.
4. Danin P.Y., Reis N., Tzuri G., Katzir N. Development and characterization of microsatellite markers in Cucumis. Theor. Appl. Genet. 2001, 102:61-72.
5. Dayaman V., Senthil N., Raveendran M., Nadarajan N., Shanmugasundaram P., Balasubramanian P. Diversity analysis in selected Indian soybean using morphological and SSR markers. Int. J. Integr. Biol. 2009, 5:125-129.
6. Doyle J.J., Doyle J.L. A rapid DNA isolation procedure from small quantities of fresh leaf tissue. Phytochem. Bull. 1987, 19:11-15.
7. Duminil J., Fineshi S., Hampe A. Can population genetic structure be predicted from life -history traits?. Am. Nat. 2007, 169:662-672.
8. Excoffier L., Guillaume L., Schneider S. Arlequin Ver 3.01: An Integrated Software Package for Population Genetics Data Analysis 2006, Computational and Molecular Population Genetic Lab, University of Berne.
9. Garris A.J., Tai T.H., Cobrun J., Kresovich S., Mc Couch S. Genetic structure and diversity in Oryza sativa L. Genetics 2005, 169:1631-1638.
10. Ge X.J., Yu Y., Zhao N.X., Chen H.S., Qi W.Q. Genetic variation in the endangered Inner Mongolia endemic shrub Tetraena mongolica Maxim (Zygophyllaceae). Biol. Conserv. 2003, 111:427-434.
11. He C., Poysa V., Yu K. Development and characterization of simple sequence repeat (SSR) markers and their use in determining relationships among Lycopersicon esculentum cultivars. Theor. Appl. Genet. 2003, 106:363-373.
12. Hiyaly A., McNeilly T., Bradshaw A.D. The effect of zinc contamination from electricity pylons: genetic constraints on selection for zinc tolerance. Heredity 1993, 70:22-32.
13. Hu Xingyu, Wang Jianfei, Lu Ping, Zhang Hongsheng Assessment of genetic diversity in broomcorn millet (Panicum miliaceum L.) using SSR markers. J. Genet. Genom. 2009, 36:491-500.
14. Huang X.Q., Börner A., Röder M.S., Ganal M.W. Assessing genetic diversity of wheat (Triticum aestivum L.) germplasm using microsatellite markers. Theor. Appl. Genet. 2002, 105:699-707.
15. Javornik B., Eggum B.O., Kreft I. Studies on protein fractions and protein quality of buckwheat. Genetika 1981, 13:115-121.
16. Konishi T., Iwata H., Yashiro K., Tsumura Y., Ohsawa R., Yasui Y., Ohnishi O. Development and characterization of microsatellite markers for common buckwheat. Breed. Sci. 2006, 56:277-285.
17. Kumar S., Bisht I.S., Bhat K.V. Population structure of rice (Oryza sativa) landraces under farmer management. Ann. Appl. Biol. 2010, 156:137-146.
18. Li M., Midmore D.J. Estimating the genetic relationships of Chinese water chestnut (Eleocharis dulcis (Burm.f.) Hensch) cultivated in Australia, using random amplified polymorphic DNAs (RAPDs). J. Hort. Sci. Biotech. 1999, 74:224-231.
19. Li R.Z., Wang S.W., Duan L.S., Li Z.H., Christoffers M.J., Mengistu L.M. Genetic diversity of wild oat (Avena fatua) populations from China and the United States. Weed Sci. 2007, 55:95-101.
20. Li Y.Q., Shi T.L., Zhang Z.W. Development of microsatellite markers from tartary buckwheat. Biotechnol. Lett. 2007, 29:823-827.
21. Liu J.Y., Wang M.S., Pang Y.J. Speeding Up Exploration and Utilization of Buckwheat Germplasm in the Central arid region 2003, vol. 1. pp. 1-2.
22. Nei M. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA 1973, 70:3321-3323.
23. Nei M. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 1978, 89:583-590.
24. Nevo E. Genetics diversity in wild cereals: regional and local studies and their bearing on conservation ex situ and in situ. Genet. Res. Crop Evol. 1998, 45:355-370.
25. Nybom H. Comparison of different nuclear DNA markers for estimating genetic diversity in plants. Mol. Ecol. 2004, 13:1143-1155.
26. Panaud O., Chen X., Mc Couch S.R. Development of microsatellite mrkers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa). Mol. Gen. Genet. 1996, 252:277-287.
27. Powell W., Morgante M., Andre C., Hanafey M., Vogel J., Tingey S., Rafalski A. The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) marker for germplasm analysis. Mol. Breed. 1996, 2:225-238.
28. Prasad B., Babar M.A., Xu X.Y., Bai G.H., Klatt A.R. Genetic diversity in the U.S. Hard red winter wheat cultivars as revealed by microsatellite markers. Crop Pasture Sci. 2009, 60:16-24.
29. Ramsay L., Macaulay M., Degli K., Maclean S., Cardle L. A simple sequence repeat-based linkage map of barley. Genetics 2000, 156:1997-2005.
30. Roussel V., Koenig J., Beckert M., Balfourier F. Molecular diversity in French bread wheat accessions related to temporal trends and breeding programs. Theor. Appl. Genet. 2004, 108:920-930.
31. Schaal B.A., Hayworth D.A., Olsen K.M., Rauscher J.T., Smith W.A. Phylogeographic studies in plants: problems and prospects. Mol. Ecol. 1998, 7:465-474.
32. Sharopova N., Mcmullen M.D., Schultz L., Schroeder S., Sanchezvilleda H. Development and mapping of SSR markers for maize. Plant Mol. Biol. 2002, 48:463-481.
33. Slatkin M. Gene flow and the geographic structure of natural populations. Science 1987, 236:778-792.
34. Smith S.C., Chin E.C.L., Shu O.S., Wall S., Senior M.L., Mitchel S.E., Kresovich S., Ziegle An evaluation of SSR loci as molecular markers in maize (Zea mays L): comparison with data from AFLPs and pedigree. Theor. Appl. Genet. 1997, 95:163-173.
35. SPSS Inc SPSS Base 11.0 User's Guide 2001, SPSS Inc, Chicago.
36. Tang R., Gao G., Liangqiong H., Zhuqiang H., Shan S. Genetic diversity in cultivated Groundnut based on SSR markers. J. Genet. Genom. 2007, 34:449-459.
37. Tantasawat P., Trongchuen J., Prajongjai T., Seehalak W., Jittayasothorn Y. Variety identification and comparative analysis of genetic diversity in yardlong bean (Vigna unguiculata spp. sesquipedalis) using morphological characters, SSR and ISSR analysis. Sci. Horticul. 2010, 124:204-216.
38. Thuillet A.C., Bataillon T., Poirier S., Santoni S., David J.L. Estimation of long term effective population sizes through the history of durum wheat using microsatellite data. Genetics 2005, 169:1589-1599.
39. Vigouroux Y., Mitchell S., Matsuoka Y., Hamblin M., Kresovich S., et al. An analysis of genetic diversity across the maize genome using microsatellite. Genetics 2005, 169:1617-1630.
40. Wang Aihua, Yu Zhiyong, Ding Yi Genetic diversity analysis of wild close relatives of barley from Tibet and the Middle East by ISSR and SSR markers. CR Biologies 2009, 332:393-403.
41. Wang Li, Guo Jing, Zhao Gui-Fang Genetic diversity of the endangered and endemic species Psathyrostachys huashanica natural populations using simple sequence repeats (SSRs) markers. Biochem. Sys. Ecol. 2006, 34:310-318.
42. Wang H.Z., Wu Z.X., Lu J.J., Shi N.N., Zhao Y., Zhang Z.T., Liu J.J. Molecular diversity and relationships among Cymbidium goeringii cultivars based on inter-simple sequence repeat (ISSR) markers. Genetica 2008, 136:391-399.
43. Wang H., Wang X., Chen P., Liu D. Assessment of genetic diversity of Yunnan, Tibetan, and Xinjiang wheat using SSR markers. J. Genet. Genomics 2007, 34:623-633.
44. Wu Y.-G., Guo Q.-S., He J.-C., Lin Y.-F., Luo Li.-J., Liu Guo.-D. Genetic diversity analysis among and within populations of Pogostemon cablin from China with ISSR and SRAP markers. Biochem. Syst. Ecol. 2010, 38:63-72.
45. Yeh F.C., Yang R.C. POPGENE v. 1.31 1999, University of Albert and Center for International Research.