메뉴 건너뛰기




Volumn 69, Issue , 2012, Pages 87-96

Microbial community characteristics of petroleum reservoir production water amended with n-alkanes and incubated under nitrate-, sulfate-reducing and methanogenic conditions

Author keywords

Enrichment cultures; Functional genes; Microbial communities; Petroleum reservoirs

Indexed keywords

CHEMICAL ANALYSIS; DNA SEQUENCES; GENE EXPRESSION; METABOLISM; MICROORGANISMS; NITRATES; OIL FIELDS; PETROLEUM RESERVOIR ENGINEERING; PETROLEUM RESERVOIRS; RNA; SULFUR COMPOUNDS;

EID: 84862829149     PISSN: 09648305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ibiod.2012.01.005     Document Type: Article
Times cited : (45)

References (51)
  • 2
    • 58149199588 scopus 로고    scopus 로고
    • Respiratory and dissimilatory nitrate-reducing communities from an extreme saline alkaline soil of the former lake Texcoco (Mexico)
    • Alcántara-Hernández R., Valenzuela-Encinas C., Marsch R., Dendooven L. Respiratory and dissimilatory nitrate-reducing communities from an extreme saline alkaline soil of the former lake Texcoco (Mexico). Extremophiles 2009, 13:169-178.
    • (2009) Extremophiles , vol.13 , pp. 169-178
    • Alcántara-Hernández, R.1    Valenzuela-Encinas, C.2    Marsch, R.3    Dendooven, L.4
  • 4
    • 0030025916 scopus 로고    scopus 로고
    • A computer analysis of primer and probe hybridization potential with bacterial small-subunit rRNA sequences
    • Brunk C., Avaniss-Aghajani E., Brunk C. A computer analysis of primer and probe hybridization potential with bacterial small-subunit rRNA sequences. Applied and Environmental Microbiology 1996, 62:872-879.
    • (1996) Applied and Environmental Microbiology , vol.62 , pp. 872-879
    • Brunk, C.1    Avaniss-Aghajani, E.2    Brunk, C.3
  • 5
    • 0015464618 scopus 로고
    • Commentary on the Hungate technique for culture of anaerobic bacteria
    • Bryant M.P. Commentary on the Hungate technique for culture of anaerobic bacteria. The American Journal of Clinical Nutrition 1972, 25:1324-1328.
    • (1972) The American Journal of Clinical Nutrition , vol.25 , pp. 1324-1328
    • Bryant, M.P.1
  • 11
    • 77954293470 scopus 로고    scopus 로고
    • Methanogenic degradation of petroleum hydrocarbons in subsurface environments: remediation, heavy oil formation, and energy recovery
    • Gray N.D., Sherry A., Hubert C., Dolfing J., Head I.M. Methanogenic degradation of petroleum hydrocarbons in subsurface environments: remediation, heavy oil formation, and energy recovery. Advances in Applied Microbiology 2010, 72:137-161.
    • (2010) Advances in Applied Microbiology , vol.72 , pp. 137-161
    • Gray, N.D.1    Sherry, A.2    Hubert, C.3    Dolfing, J.4    Head, I.M.5
  • 13
    • 0030032633 scopus 로고    scopus 로고
    • Isolation and identification of methanogen-specific DNA from blanket bog peat by PCR amplification and sequence analysis
    • Hales B., Edwards C., Ritchie D., Hall G., Pickup R., Saunders J. Isolation and identification of methanogen-specific DNA from blanket bog peat by PCR amplification and sequence analysis. Applied and Environmental Microbiology 1996, 62:668-675.
    • (1996) Applied and Environmental Microbiology , vol.62 , pp. 668-675
    • Hales, B.1    Edwards, C.2    Ritchie, D.3    Hall, G.4    Pickup, R.5    Saunders, J.6
  • 16
    • 5044240973 scopus 로고    scopus 로고
    • Bellerophon: a program to detect chimeric sequences in multiple sequence alignments
    • Huber T., Faulkner G., Hugenholtz P. Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 2004, 20:2317-2319.
    • (2004) Bioinformatics , vol.20 , pp. 2317-2319
    • Huber, T.1    Faulkner, G.2    Hugenholtz, P.3
  • 18
    • 0034466705 scopus 로고    scopus 로고
    • Anaerobic oxidation of n-dodecane by an addition reaction in a sulfate-reducing bacterial enrichment culture
    • Kropp K.G., Davidova I.A., Suflita J.M. Anaerobic oxidation of n-dodecane by an addition reaction in a sulfate-reducing bacterial enrichment culture. Applied and Environmental Microbiology 2000, 66:5393-5398.
    • (2000) Applied and Environmental Microbiology , vol.66 , pp. 5393-5398
    • Kropp, K.G.1    Davidova, I.A.2    Suflita, J.M.3
  • 19
    • 35948975729 scopus 로고    scopus 로고
    • The use of stable isotope probing to identify key iron-reducing microorganisms involved in anaerobic benzene degradation
    • Kunapuli U., Lueders T., Meckenstock R.U. The use of stable isotope probing to identify key iron-reducing microorganisms involved in anaerobic benzene degradation. The ISME Journal 2007, 1:643-653.
    • (2007) The ISME Journal , vol.1 , pp. 643-653
    • Kunapuli, U.1    Lueders, T.2    Meckenstock, R.U.3
  • 20
    • 0032772104 scopus 로고    scopus 로고
    • Microbial population changes during bioremediation of an experimental oil spill
    • MacNaughton S.J. Microbial population changes during bioremediation of an experimental oil spill. Applied and Environmental Microbiology 1999, 65:3566-3574.
    • (1999) Applied and Environmental Microbiology , vol.65 , pp. 3566-3574
    • MacNaughton, S.J.1
  • 22
  • 23
    • 77954709087 scopus 로고    scopus 로고
    • Mature fine tailings from oil sands processing harbour diverse methanogenic communities
    • Penner T.J., Foght J.M. Mature fine tailings from oil sands processing harbour diverse methanogenic communities. Canadian Journal of Microbiology 2010, 56:459-470.
    • (2010) Canadian Journal of Microbiology , vol.56 , pp. 459-470
    • Penner, T.J.1    Foght, J.M.2
  • 24
    • 58149216600 scopus 로고    scopus 로고
    • Characterizing microbial diversity in production water from an Alaskan mesothermic petroleum reservoir with two independent molecular methods
    • Pham V.D., Hnatow L.L., Zhang S., Fallon R.D., Jackson S.C., Tomb J.-F., DeLong E.F., Keeler S.J. Characterizing microbial diversity in production water from an Alaskan mesothermic petroleum reservoir with two independent molecular methods. Environmental Microbiology 2009, 11:176-187.
    • (2009) Environmental Microbiology , vol.11 , pp. 176-187
    • Pham, V.D.1    Hnatow, L.L.2    Zhang, S.3    Fallon, R.D.4    Jackson, S.C.5    Tomb, J.-F.6    DeLong, E.F.7    Keeler, S.J.8
  • 25
    • 42049094195 scopus 로고    scopus 로고
    • Syntrophorhabdus aromaticivorans gen. nov., sp. nov., the first cultured anaerobe capable of degrading phenol to acetate in obligate syntrophic associations with a hydrogenotrophic methanogen
    • Qiu Y.-L., Hanada S., Ohashi A., Harada H., Kamagata Y., Sekiguchi Y. Syntrophorhabdus aromaticivorans gen. nov., sp. nov., the first cultured anaerobe capable of degrading phenol to acetate in obligate syntrophic associations with a hydrogenotrophic methanogen. Applied and Environmental Microbiology 2008, 74:2051-2058.
    • (2008) Applied and Environmental Microbiology , vol.74 , pp. 2051-2058
    • Qiu, Y.-L.1    Hanada, S.2    Ohashi, A.3    Harada, H.4    Kamagata, Y.5    Sekiguchi, Y.6
  • 26
    • 33645087671 scopus 로고    scopus 로고
    • Enrichment and detection of microorganisms involved in direct and indirect methanogenesis from methanol in an anaerobic thermophilic bioreactor
    • Roest K., Altinbas M., Paulo P.L., Heilig H.G.H.J., Akkermans A.D.L., Smidt H., de Vos W.M., Stams A.J.M. Enrichment and detection of microorganisms involved in direct and indirect methanogenesis from methanol in an anaerobic thermophilic bioreactor. Microbial Ecology 2005, 50:440-446.
    • (2005) Microbial Ecology , vol.50 , pp. 440-446
    • Roest, K.1    Altinbas, M.2    Paulo, P.L.3    Heilig, H.G.H.J.4    Akkermans, A.D.L.5    Smidt, H.6    de Vos, W.M.7    Stams, A.J.M.8
  • 27
    • 18744382447 scopus 로고    scopus 로고
    • Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys
    • Sait M., Hugenholtz P., Janssen P.H. Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys. Environmental Microbiology 2002, 4:654-666.
    • (2002) Environmental Microbiology , vol.4 , pp. 654-666
    • Sait, M.1    Hugenholtz, P.2    Janssen, P.H.3
  • 28
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 1987, 4:406-425.
    • (1987) Molecular Biology and Evolution , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 29
    • 34447540346 scopus 로고    scopus 로고
    • Isolation of key methanogens for global methane emission from rice paddy fields: a novel isolate affiliated with the clone cluster rice cluster I
    • Sakai S., Imachi H., Sekiguchi Y., Ohashi A., Harada H., Kamagata Y. Isolation of key methanogens for global methane emission from rice paddy fields: a novel isolate affiliated with the clone cluster rice cluster I. Applied and Environmental Microbiology 2007, 73:4326-4331.
    • (2007) Applied and Environmental Microbiology , vol.73 , pp. 4326-4331
    • Sakai, S.1    Imachi, H.2    Sekiguchi, Y.3    Ohashi, A.4    Harada, H.5    Kamagata, Y.6
  • 32
    • 19544367285 scopus 로고    scopus 로고
    • Hydrocarbon contamination changes the bacterial diversity of soil from around Scott Base, Antarctica
    • Saul D.J., Aislabie J.M., Brown C.E., Harris L., Foght J.M. Hydrocarbon contamination changes the bacterial diversity of soil from around Scott Base, Antarctica. FEMS Microbiology Ecology 2005, 53:141-155.
    • (2005) FEMS Microbiology Ecology , vol.53 , pp. 141-155
    • Saul, D.J.1    Aislabie, J.M.2    Brown, C.E.3    Harris, L.4    Foght, J.M.5
  • 33
    • 0002739951 scopus 로고
    • Principles and limits of anaerobic degradation: environmental and technological aspects
    • Wiley, New York, A.J.B. Zehnder (Ed.)
    • Schink B. Principles and limits of anaerobic degradation: environmental and technological aspects. Biology of anaerobic microorganisms 1988, 771-846. Wiley, New York. A.J.B. Zehnder (Ed.).
    • (1988) Biology of anaerobic microorganisms , pp. 771-846
    • Schink, B.1
  • 34
    • 0031719182 scopus 로고    scopus 로고
    • Phylogenetic diversity of mesophilic and thermophilic granular sludges determined by 16S rRNA gene analysis
    • Sekiguchi Y., Kamagata Y., Syutsubo K., Ohashi A., Harada H., Nakamura K. Phylogenetic diversity of mesophilic and thermophilic granular sludges determined by 16S rRNA gene analysis. Microbiology 1998, 144:2655-2665.
    • (1998) Microbiology , vol.144 , pp. 2655-2665
    • Sekiguchi, Y.1    Kamagata, Y.2    Syutsubo, K.3    Ohashi, A.4    Harada, H.5    Nakamura, K.6
  • 35
    • 84862782140 scopus 로고    scopus 로고
    • Which microbial communities are present? Application of clone libraries: syntrophic acetate degradation to methane in a high-temperature petroleum reservoir - culture-based and 16S rRNA genes characterisation
    • Springer, Netherlands, C. Whitby, T.L. Skovhus (Eds.)
    • Shestakova N.M., Ivoilov V.S., Tourova T.P., Belyaev S.S., Poltaraus A.B., Nazina T.N. Which microbial communities are present? Application of clone libraries: syntrophic acetate degradation to methane in a high-temperature petroleum reservoir - culture-based and 16S rRNA genes characterisation. Applied microbiology and molecular biology in oilfield systems 2011, 45-53. Springer, Netherlands. C. Whitby, T.L. Skovhus (Eds.).
    • (2011) Applied microbiology and molecular biology in oilfield systems , pp. 45-53
    • Shestakova, N.M.1    Ivoilov, V.S.2    Tourova, T.P.3    Belyaev, S.S.4    Poltaraus, A.B.5    Nazina, T.N.6
  • 36
    • 33747492397 scopus 로고    scopus 로고
    • Molecular characterization of microbial communities in fault-bordered aquifers in the Miocene formation of northernmost Japan
    • Shimizu S., Akiyama M., Ishijima Y., Hama K., Kunimaru T., Naganuma T. Molecular characterization of microbial communities in fault-bordered aquifers in the Miocene formation of northernmost Japan. Geobiology 2006, 4:203-213.
    • (2006) Geobiology , vol.4 , pp. 203-213
    • Shimizu, S.1    Akiyama, M.2    Ishijima, Y.3    Hama, K.4    Kunimaru, T.5    Naganuma, T.6
  • 37
    • 79959869157 scopus 로고    scopus 로고
    • Anaerobic biodegradation of longer-chain n-alkanes coupled to methane production in oil sands tailings
    • Siddique T., Penner T., Semple K., Foght J.M. Anaerobic biodegradation of longer-chain n-alkanes coupled to methane production in oil sands tailings. Environmental Science & Technology 2011, 45:5892-5899.
    • (2011) Environmental Science & Technology , vol.45 , pp. 5892-5899
    • Siddique, T.1    Penner, T.2    Semple, K.3    Foght, J.M.4
  • 39
    • 33847223817 scopus 로고    scopus 로고
    • Microbial communities involved in anaerobic degradation of unsaturated or saturated long-chain fatty acids
    • Sousa D.Z., Pereira M.A., Stams A.J.M., Alves M.M., Smidt H. Microbial communities involved in anaerobic degradation of unsaturated or saturated long-chain fatty acids. Applied and Environmental Microbiology 2007, 73:1054-1064.
    • (2007) Applied and Environmental Microbiology , vol.73 , pp. 1054-1064
    • Sousa, D.Z.1    Pereira, M.A.2    Stams, A.J.M.3    Alves, M.M.4    Smidt, H.5
  • 41
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution 2007, 24:1596-1599.
    • (2007) Molecular Biology and Evolution , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 42
    • 0032463021 scopus 로고    scopus 로고
    • Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration
    • Wagner M., Roger A.J., Flax J.L., Brusseau G.A., Stahl D.A. Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration. Journal of Bacteriology 1998, 180:2975-2982.
    • (1998) Journal of Bacteriology , vol.180 , pp. 2975-2982
    • Wagner, M.1    Roger, A.J.2    Flax, J.L.3    Brusseau, G.A.4    Stahl, D.A.5
  • 43
    • 79953105507 scopus 로고    scopus 로고
    • Characterization of an alkane-degrading methanogenic enrichment culture from production water of an oil reservoir after 274 days of incubation
    • Wang L.-Y., Gao C.-X., Mbadinga S.M., Zhou L., Liu J.-F., Gu J.-D., Mu B.-Z. Characterization of an alkane-degrading methanogenic enrichment culture from production water of an oil reservoir after 274 days of incubation. International Biodeterioration & Biodegradation 2011, 65:444-450.
    • (2011) International Biodeterioration & Biodegradation , vol.65 , pp. 444-450
    • Wang, L.-Y.1    Gao, C.-X.2    Mbadinga, S.M.3    Zhou, L.4    Liu, J.-F.5    Gu, J.-D.6    Mu, B.-Z.7
  • 44
    • 79960172211 scopus 로고    scopus 로고
    • Enrichment and cultivation of prokaryotes associated with the sulphate-methane transition zone of diffusion-controlled sediments of Aarhus Bay, Denmark, under heterotrophic conditions
    • Webster G., Sass H., Cragg B.A., Gorra R., Knab N.J., Green C.J., Mathes F., Fry J.C., Weightman A.J., Parkes R.J. Enrichment and cultivation of prokaryotes associated with the sulphate-methane transition zone of diffusion-controlled sediments of Aarhus Bay, Denmark, under heterotrophic conditions. FEMS Microbiology Ecology 2011, 77:248-263.
    • (2011) FEMS Microbiology Ecology , vol.77 , pp. 248-263
    • Webster, G.1    Sass, H.2    Cragg, B.A.3    Gorra, R.4    Knab, N.J.5    Green, C.J.6    Mathes, F.7    Fry, J.C.8    Weightman, A.J.9    Parkes, R.J.10
  • 46
    • 70749107427 scopus 로고    scopus 로고
    • Anaerobic hydrocarbon-degrading microorganisms: an overview
    • Springer, Berlin, K.N. Timmis (Ed.)
    • Widdel F., Knittel K., Galushko A. Anaerobic hydrocarbon-degrading microorganisms: an overview. Handbook of hydrocarbon and lipid microbiology 2010, 1997-2021. Springer, Berlin. K.N. Timmis (Ed.).
    • (2010) Handbook of hydrocarbon and lipid microbiology , pp. 1997-2021
    • Widdel, F.1    Knittel, K.2    Galushko, A.3
  • 47
    • 0035370088 scopus 로고    scopus 로고
    • Anaerobic biodegradation of saturated and aromatic hydrocarbons
    • Widdel F., Rabus R. Anaerobic biodegradation of saturated and aromatic hydrocarbons. Current Opinion in Biotechnology 2001, 12:259-276.
    • (2001) Current Opinion in Biotechnology , vol.12 , pp. 259-276
    • Widdel, F.1    Rabus, R.2
  • 49
    • 33644606606 scopus 로고    scopus 로고
    • FastGroupII: a web-based bioinformatics platform for analyses of large 16S rDNA libraries
    • Yu Y., Breitbart M., McNairnie P., Rohwer F. FastGroupII: a web-based bioinformatics platform for analyses of large 16S rDNA libraries. BMC Bioinformatics 2006, 7:57.
    • (2006) BMC Bioinformatics , vol.7 , pp. 57
    • Yu, Y.1    Breitbart, M.2    McNairnie, P.3    Rohwer, F.4
  • 51
    • 0033575903 scopus 로고    scopus 로고
    • Methane formation from long-chain alkanes by anaerobic microorganisms
    • Zengler K., Richnow H.H., Rossello-Mora R., Michaelis W., Widdel F. Methane formation from long-chain alkanes by anaerobic microorganisms. Nature 1999, 401:266-269.
    • (1999) Nature , vol.401 , pp. 266-269
    • Zengler, K.1    Richnow, H.H.2    Rossello-Mora, R.3    Michaelis, W.4    Widdel, F.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.