Development and application of one-step multiplex reverse transcription PCR for simultaneous detection of five diarrheal viruses in adult cattle

Archives of Virology

Volumn 157, Issue 6, 2012, Pages 1063-1069

  Fukuda, Masaharu ^a,b,e   Kuga, Kazufumi ^c,e   Miyazaki, Ayako ^c   Suzuki, Tohru ^c   Tasei, Keito ^a   Aita, Tsunehiko ^d   Mase, Masaji ^c,e   Sugiyama, Makoto ^e   Tsunemitsu, Hiroshi ^c,e  

^a Saitama Prefectural Chuo Livestock Hygiene Service Center   (Japan)

^b Saitama Prefectural Kumagaya Livestock Hygiene Service Center   (Japan)

^c NATIONAL INSTITUTE OF ANIMAL HEALTH   (Japan)

^d Niigata Chuo Livestock Hygiene Service Center   (Japan)

^e GIFU UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BOS; BOVINAE; BOVINE CORONAVIRUS; BOVINE GROUP B ROTAVIRUS; BOVINE GROUP C ROTAVIRUS; BOVINE TOROVIRUS; CORONAVIRUS; RNA VIRUSES; ROTAVIRUS; ROTAVIRUS A; TOROVIRUS;

EID: 84862828821     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-012-1271-5     Document Type: Article

References (47)

1. Abraham G, Roeder PL, Zewdu R (1992) Agents associated with neonatal diarrhoea in Ethiopian dairy calves. Trop Anim Health Prod 24: 74-80.
2. Al-Yousif Y, Anderson J, Chard-Bergstrom C, Kapil S (2002) Development, evaluation, and application of lateral-flow immunoassay (immunochromatography) for detection of rotavirus in bovine fecal samples. Clin Diagn Lab Immunol 9: 723-725.
3. Akashi H, Inaba Y, Miura Y, Tokuhisa S, Satoda K (1980) Properties of a coronavirus isolated from a cow with epizootic diarrhea. Vet Microbiol 5: 265-276.
4. Asano KM, de Souza SP, de Barros IN, Ayres GR, Silva SO, Richtzenhain LJ, Brandão PE (2010) Multiplex semi-nested RT-PCR with exogenous internal control for simultaneous detection of bovine coronavirus and group A rotavirus. J Virol Methods 169: 375-379.
5. Ben Salem AN, Chupin Sergei A, Bjadovskaya Olga P, Andreeva Olga G, Mahjoub A, Prokhvatilova Larissa B (2010) Multiplex nested RT-PCR for the detection of porcine enteric viruses. J Virol Methods 165: 283-293.
6. Bridger JC (1994) Non-group A rotaviruses. In: Kapikian AZ (ed) Viral infections of the gastrointestinal tract, 2nd edn. Marcel Dekker, New York, pp 369-407.
7. Chang KO, Parawani AV, Smith D, Saif LJ (1997) Detection of group B rotaviruses in fecal samples from diarrheic calves and adult cows and characterization of their VP7 genes. J Clin Microbiol 35: 2107-2110.
8. Chang KO, Nielsen PR, Ward LA, Saif LJ (1999) Dual infection of gnotobiotic calves with bovine strains of group A and porcine-like group C rotaviruses influences pathogenesis of the group C rotavirus. J Viol 73: 9284-9293.
9. Chinsangaram J, Akita GY, Osburn BI (1994) Detection of bovine group B rotaviruses in feces by polymerase chain reaction. J Vet Diagn Invest 6: 302-307.
10. Cho YI, Kim WI, Liu S, Kinyon JM, Yoon KJ (2010) Development of a panel of multiplex real-time polymerase chain reaction assays for simultaneous detection of major agents causing calf diarrhea in feces. J Vet Diagn Invest 22: 509-517.
11. Dhama K, Chauhan RS, Mahendran M, Malik SV (2009) Rotavirus diarrhea in bovines and other domestic animals. Vet Res Commun 33: 1-23.
12. Estes MK, Kapikian AZ (2007) Rotaviruses. In: Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE (eds) Fields Virology, 5th edn. Lippincott, Williams and Wilkins, Philadelphia, pp 1917-1974.
13. Evermann JF, Barrington GM (2005) Clinical features. In: Goyal SM, Ridpath JF (eds) Bovine viral diarrhea virus; diagnosis, management, and control. Blackwell Publishing, Iowa, pp 105-119.
14. Fukai K, Takahashi T, Tajima K, Koike S, Iwane K, Inoue K (2007) Molecular characterization of a novel bovine group A rotavirus. Vet Microbiol 20: 217-224.
15. Fukutomi T, Tsunemitsu H, Akashi H (1999) Detection of bovine coronaviruses from adult cows with epizootic diarrhea and their antigenic and biological diversities. Arch Virol 144: 997-1006.
16. Gouvea V, Glass RI, Woods P, Taniguchi K, Clark HF, Forrester B, Fang ZY (1990) Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens. J Clin Microbiol 28: 276-282.
17. Gouvea V, Allen JR, Glass RI, Fang ZY, Bremont M, Cohen J, McCrae MA, Saif LJ, Sinarachatanant P, Caul EO (1991) Detection of group B and C rotaviruses by polymerase chain reaction. J Clin Microbiol 29: 519-523.
18. Hayashi M, Nagai M, Hayakawa Y, Takeuchi K, Tsunemitsu H (2001) Outbreak of diarrhoea and milk drop in cows infected with bovine group B rotavirus. Vet Rec 15: 331-332.
19. Hoet AE, Nielsen PR, Hasoksuz M, Thomas C, Wittum TE, Saif LJ (2003) Detection of bovine torovirus and other enteric pathogens in feces from diarrhea cases in cattle. J Vet Diagn Invest 15: 205-212.
20. Inaba Y, Omori T, Kono M, Matumoto M (1963) Parainfluenza 3 virus isolated from Japanese cattle. I. Isolation and identification. Jpn J Exp Med 33: 313-329.
21. Inaba Y, Tanaka Y, Sato K, Omori T, Matumoto M (1972) Bovine respiratory syncytial virus. Studies on an outbreak in Japan, 1968-1969. Jpn J Microbiol 16: 373-383.
22. Ito T, Okada N, Fukuyama S (2007) Epidemiological analysis of bovine torovirus in Japan. Virus Res 126: 32-37.
23. Kato T, Aizawa M, Takayoshi K, Kokuba T, Yanase T, Shirafuji H, Tsuda T, Yamakawa M (2009) Phylogenetic relationships of the G gene sequence of bovine ephemeral fever virus isolated in Japan, Taiwan and Australia. Vet Microbiol 137: 217-223.
24. Kodama K, Sasaki N, Fukuyama S, Izumida A, Ishii F (1974) Studies on cytopathogenic bovine viral diarrhea virus recovery, identification, and properties of the isolates virus. Bull Nippon Vet Zootech Coll 23: 51-60.
25. Kurogi H, Inaba Y, Goto Y, Takahashi A, Sato K (1974) Isolation of rhinovirus from cattle in outbreaks of acute respiratory disease. Arch Gesamte Virusforsch 44: 215-226.
26. Kuwabara M, Wada K, Maeda Y, Miyazaki A, Tsunemitsu H (2007) First isolation of cytopathogenic bovine torovirus in cell culture from a calf with diarrhea. Clin Vaccine Immunol 14: 998-1004.
27. Matthijnssens J, Rahman M, van Ranst M (2008) Two out of the 11 genes of an unusual human G6P[6] rotavirus isolate are of bovine origin. J Gen Virol 89: 2630-2635.
28. Mawatari T, Taneichi A, Kawagoe T, Hosokawa M, Togashi K, Tsunemitsu H (2004) Detection of a bovine group C rotavirus from adult cows with diarrhea and reduced milk production. J Vet Med Sci 66: 887-890.
29. Mebus CA, Stair EL, Rhodes MB, Twiehaus MJ (1973) Neonatal calf diarrhea: propagation, attenuation, and characteristics of a coronavirus-like agent. Am J Vet Res 34: 145-150.
30. Miura Y, Goto Y, Kubo M, Kono Y (1988) Isolation of Chuzan virus, a new member of the Palyam subgroup of the genus Orbivirus, from cattle and Culicoides oxystoma in Japan. Am J Vet Res 49: 2022-2025.
31. Nagai M, Sato M, Nagano H, Pang H, Kong X, Murakami T, Ozawa T, Akashi H (1998) Nucleotide sequence homology to bovine viral diarrhea virus 2 (BVDV 2) in the 5′ untranslated region of BVDVs from cattle with mucosal disease or persistent infection in Japan. Vet Microbiol 60: 271-276.
32. Natsuaki S, Goto K, Nakamura K, Yamada M, Ueo H, Komori T, Shirakawa H, Utinuno Y (2007) Fatal winter dysentery with severe anemia in an adult cow. J Vet Med Sci 69: 957-960.
33. Ohashi S, Yoshida K, Yanase T, Tsuda T (2002) Analysis of intratypic variation evident in an Ibaraki virus strain and its epizootic hemorrhagic disease virus serogroup. J Clin Microbiol 40: 3684-3688.
34. Oya A, Okuno T, Ogata T, Kobayashi I, Matsuyama T (1961) Akabane, a new arbor virus isolated in Japan. Jpn J Med Sci Biol 14: 101-108.
35. Phan TG, Nguyen TA, Yan H, Okitsu S, Ushijima H (2005) A novel RT-multiplex PCR for enteroviruses, hepatitis A and E viruses and influenza A virus among infants and children with diarrhea in Vietnam. Arch Virol 150: 1175-1185.
36. Saif LJ, Brock KV, Redman DR, Kohler EM (1991) Winter dysentery in dairy herds: electron microscopic and serological evidence for an association with coronavirus infection. Vet Rec 128: 447-449.
37. Sato K, Inaba Y, Takahashi E, Ito Y, Kurogi H, Akashi H, Satoda K, Omori T, Matumoto M (1978) Isolation of a reovirus-like agent (rotavirus) from neonatal calf diarrhea in Japan. Microbiol Immunol 22: 499-503.
38. Sato M, Nakagomi T, Tajima K, Ezura K, Akashi H, Nakagomi O (1997) Isolation of serotype G8, P6[1] bovine rotavirus from adult cattle with diarrhea. J Clin Microbiol 35: 1266-1268.
39. Smits SL, Lavazza A, Matiz K, Horzinek MC, Koopmans MP, de Groot RJ (2003) Phylogenetic and evolutionary relationships among torovirus field variants: evidence for multiple intertypic recombination events. J Virol 77: 9567-9577.
40. Song DS, Kang BK, Oh JS, Ha GW, Yang JS, Moon HJ, Jang YS, Park BK (2006) Multiplex reverse transcription-PCR for rapid differential detection of porcine epidemic diarrhea virus, transmissible gastroenteritis virus, and porcine group A rotavirus. J Vet Diagn Invest 18: 278-281.
41. Takahashi K, Oya A, Okada T, Matsuo R, Kuma M, Noguchi H (1968) Aino virus, a new member of Simbu group of arboviruses from mosquitoes in Japan. Jpn J Med Sci Biol 21: 95-101.
42. Tsunemitsu H, Saif LJ, Jiang BM, Shimizu M, Hiro M, Yamaguchi H, Ishiyama T, Hirai T (1991) Isolation, characterization, and serial propagation of a bovine group C rotavirus in a monkey kidney cell line (MA104). J Clin Microbiol 29: 2609-2613.
43. Tsunemitsu H, Jiang B, Saif LJ (1996) Sequence comparison of the VP7 gene encoding the outer capsid glycoprotein among animal and human group C rotaviruses. Arch Virol 141: 705-713.
44. Tsunemitsu H, Smith DR, Saif LJ (1999) Experimental inoculation of adult dairy cows with bovine coronavirus and detection of coronavirus in feces by RT-PCR. Arch Virol 144: 167-175.
45. Tsunemitsu H, Morita D, Takaku H, Nishimori T, Imai K, Saif LJ (1999) First detection of bovine group B rotavirus in Japan and sequence of its VP7 gene. Arch Virol 144: 805-815.
46. Wakuda M, Ide T, Sasaki J, Komoto S, Ishii J, Sanekata T, Taniguchi K (2011) Porcine rotavirus closely related to novel group of human rotaviruses. Emerg Infect Dis 17: 1491-1493.
47. Woode GN, Reed DE, Runnels PL, Herrig MA, Hill HT (1982) Studies with an unclassified virus isolated from diarrheic calves. Vet Microviol 7: 221-240.