Micromonospora haikouensis sp. nov., isolated from mangrove soil

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 101, Issue 3, 2012, Pages 649-655

  Xie, Qing Yi ^a,b   Qu, Zhi ^b   Lin, Hai Peng ^b   Li, Lei ^a,c   Hong, Kui ^a,b,c  

^a HAINAN UNIVERSITY   (China)

^b INSTITUTE OF TROPICAL BIOSCIENCE AND BIOTECHNOLOGY   (China)

^c WUHAN UNIVERSITY   (China)

Author keywords

16S rRNA; Micromonospora haikouensis sp. nov.; Polyphasic taxonomy

Indexed keywords

ARABINOSE; BACTERIAL DNA; CARDIOLIPIN; CYTOSINE; GLUCOSE; GUANINE; MENAQUINONE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLINOSITOL MANNOSIDE; PHOSPHOLIPID; UNCLASSIFIED DRUG; XYLOSE;

16S RRNA GENE; ACTINOBACTERIA; ARTICLE; BACTERIAL CELL WALL; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CHEMOTAXONOMY; CHINA; CONTROLLED STUDY; GENE SEQUENCE; GENOTYPE; GYRB GENE; MANGROVE; MICROMONOSPORA CARBONACEA; MICROMONOSPORA HAIKOUENSIS; MICROMONOSPORA KRABIENSIS; MICROMONOSPORA SIAMENSIS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SEDIMENT; SEQUENCE ANALYSIS; SOIL;

AVICENNIA; CARBON; CHINA; DNA, BACTERIAL; DNA, RIBOSOMAL; MICROMONOSPORA; MOLECULAR SEQUENCE DATA; NITROGEN; PHENOTYPE; PHYLOGENY; RIBOTYPING; RNA, RIBOSOMAL, 16S; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, NUCLEIC ACID; SOIL MICROBIOLOGY;

MICROMONOSPORA; MICROMONOSPORA CARBONACEA; MICROMONOSPORA KRABIENSIS;

EID: 84862827072     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-011-9682-y     Document Type: Article

References (40)

1. Arai T (1975) Culture media for actinomycetes. The Society for Actinomycetes Japan, Tokyo
2. Castiglione F, Lazzarini A, Carrano L, Corti E, Ciciliato I, Gastaldo L, Candiani P, Losi D, Marinelli F, Selva E (2008) Determining the structure and mode of action of microbisporicin, a potent antibiotic active against multiresistant pathogens. Chem Biol 15:22-31
3. Chun J, Lee JH, Jung Y, Kim M, Kim S, Kim BK, Lim YW (2007) EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57:2259-2261 (Pubitemid 350031697)
4. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-789
5. Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406-416
6. Garcia LC, Martínez-Molina E, Trujillo ME (2010) Micromonospora pisi sp.nov., isolated from root nodules of Pisum sativum. Int J Syst Evol Microbiol 60:331-337
7. Gregersen T (1978) Rapid method for distinction of Gram-negative from Gram-positive bacteria. Eur J Appl Microbiol 5:123-127
8. Hong K, Gao AH, Xie QY, Gao H, Zhuang L, Lin HP, Yu HP, Li J, Yao XS, Goodfellow M, Ruan JS (2009) Actinomycetes for marine drug discovery isolated from mangrove soils and plants in China. Mar Drugs 7:24-44
9. Huang H, Lv J, Hu Y, Fang Z, Zhang K, Bao SX (2008) Micromonospora rifamycinica sp. nov., a novel actinomycete from mangrove sediment. Int J Syst Evol Microbiol 58:17-20 (Pubitemid 351843531)
10. Jongrungruangchoc S, Tanasupawat S, Kudo T (2008) Micromonospora krabiensis sp. nov., isolated from marine soil in Thailand. J Gen Appl Microbiol 54:127-133 (Pubitemid 351850740)
11. Kam̈pfer P, Steiof M, Dott W (1991) Microbiological characterisation of a fuel-oil contaminated site including numerical identification of heterotrophic water and soil bacteria. Microb Ecol 21:227-251
12. Kasai H, Tamura T, Harayama S (2000) Intrageneric relationships among Micromonospora species deduced from gyrB-based phylogeny and DNA relatedness. Int J Syst Evol Microbiol 50:127-134 (Pubitemid 30084063)
13. Kelly KL (1964) Inter-society color council-national bureau of standards color name charts illustrated with centroid colors. US Government Printing Office, Washington, DC
14. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
15. Kirby BM, Meyers PR (2010) Micromonospora tulbaghiae sp. nov., isolated from the leaves of wild garlic, Tulbaghia violacea. Int J Syst Evol Microbiol 60:331-337
16. Lechevalier MP, Lechevalier HA (1980) The chemotaxonomy of actinomycetes. In: Dietz A, Thayer J (eds) Taxonomy (Special Publication no. 6). Society for Industrial Microbiology, Arlington, pp 227-291
17. Lechevalier MP, De Biévre C, Lechevalier HA (1977) Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol 5:249-260
18. Lee SD, Goodfellow M, Han YC (1999) Aphylogenetic analysis of the genus Catellatospora based on 16S ribosomal DNA sequences, including transfer of Catellatospora matsumotoense to the genus Micromonospora as Micromonospora matsumotoense comb nov. FEMS Microbiol Lett 178: 349-354 (Pubitemid 29412907)
19. Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159-167
20. Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JK (1984) An integrated procedure for the extraction of isoprenoid quinines and polar lipids. J Microbiol Methods 2:233-241 (Pubitemid 14058168)
21. Nakajima Y, Kitpreechavanich V, Suzuki K, Kudo T (1999) Microbispora caponicas sp. nov., a new species of the genus Microbispora isolated from Thai soil. Int J Syst Bacteriol 49:1761-1767 (Pubitemid 29519108)
22. Ochi K (1987) Metabolic initiation of differentiation and secondary metabolism by Streptomyces griseus: significance of the stringent response (ppGpp) and GTP content in relation to A factor. J Bacteriol 169:3608-3616
23. Oliver JD, Colwell RR (1973) Extractable lipids of Gram-negative marine bacteria: fatty- acid composition. Int J Syst Bacteriol 23:442-458
24. Ørskov J (1923) Investigations into the morphology of the ray fungi. Levin and Munksgaard, Copenhagen
25. Pospiech A, Neumann B (1995) A versatile quick-prep of genomic DNA from gram-positive bacteria. Trends Gene 11:217-218
26. Raper KB, Fennell DI (1965) The genus Aspergillus. Williams and Wilkins, Balti-more, p 686
27. Saitou N, Nei M (1987) The neighbour-joining method: a new method for reconstructing phylogenetic tree. Mol Biol Evol 4:406-425
28. Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. Technical note 101. Microbial ID, Newark
29. Shirling EB, Gottlieb D (1966) Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:313-340
30. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4, molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599 (Pubitemid 47236692)
31. Tanasupawat S, Jongrungruangchok S, Kudo T (2010) Micromonospora marina sp. nov., isolated from sea sand. Int. J Syst Evol Microbiol 60:648-652
32. Thawai C, Tanasupawat S, Itoh T, Suwanborirux K, Kudo T (2005) Micromonospora siamensis sp. nov., isolated from Thai peat swamp forest. J Gen Appl Microbiol 51:229-234 (Pubitemid 41574031)
33. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882 (Pubitemid 28022245)
34. Uchida K, Aida A (1977) Acyl type of bacterial cell wall: its simple identification by colorimetricmethod. J Gen Appl Microbiol 23:249-260 (Pubitemid 8255018)
35. Wang C, Xu XX, Qu Z, Wang HL, Lin HP, Xie QY, Ruan JS, Hong K (2011) Micromonospora rhizosphaerae sp. nov., isolated from mangrove rhizosphere soil. Int J Syst Evol Microbiol 61:320-324
36. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH et al (1987) International 21 Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation 22 of approaches to bacterial systematics. Int J Syst Bacteriol 37:463-464
37. Williams ST, Cross T (1971) Actinomycetes. In: Booth C (ed) In methods in microbiology, 4th edn. Academic Press, London, pp 295-334
38. Williams ST, Goodfellow M, Alderson G, Wellington EMH, Sneath PHA, Sackin MJ (1983) Numerical classification of Streptomyces and related genera. J Gen Microbiol 129:1743-1813 (Pubitemid 13044278)
39. Xie QY, Hong K, Goodfellow M (2011) Genus-specific primers targeting the 16S rRNA gene for PCR detection of members of the genus Verrucosispora. Antonie van Leeuwenhoek 100:117-128
40. Zhang L, Xi L, Ruan J, Huang Y (2011) Micromonospora yangpuensis sp. nov., isolated from a sponge in South China Sea. Int J Syst Evol Microbiol. doi:10.1099/ijs.0.029439-0